Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004389

Physical Location & Seq

Genomic Coordinates Forward (+)

23838952 .. 23840726

Gene Structure 1775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCACCGGCAGTGCTTGCAGGTTCTTCCTCTTCTTCTTGCTCTGCCGCCTTCAACAGGCACCAGTACAAAACCCCTCAGATCACTTCCCCAAAATCATTGGCACCACTGCAATGCCAGAAGACTAGCTTCCAAGGGTTGTCACTTGGAGAAGCCAAAAGGGGTGTATCTGAATCCTTCATAGCTGAGAATATTAGTAGCGCTACTGTGAGAAGAGGTCGGCTGCTTAGCATAGTTGCAAGAACAGCTGGGGCTGCAAAGACAATTGAGGCTGAGGTTGACAAGCCATTAGGCCTCACTTTGGGTCAAAAGCCTGGAGGTGTTGTTACCATTACTGCTGTGGAAGGAGGTGGAAATGCAGCAAAGGCAGGACTCAAGGCAGGGGACCAGGTGCTCTACACTAGCAGTTTCTTTGGAGATGAATTGTGGCCAGCCGATAAGCTTGGATTTACTAAAACTGCTATCAACGCCAAGCCTGACAACGTTTACTTTGTTGTTAGCAGAGGTGGTGCTGAGGTAGATGTCAAACGGCTACCAAAGCGTCCAGCTCCTCCTCGCTTTGGAAGGAAACTAACCGAGTCTCAAAAGGCTAGAGCTACTCACATATGCCTTGACTGTGGATTCATATACACATTATCAAAACCTTTTGATGAACAACCGGATACGTACGCATGCCCTCAATGTATTGCACCAAAGAAGAGGTTTGCGAGATATGATGTGAACACCGGGAAACCTATCGGTGGCGGTTTGCCTCCCATTGGAGTCATTATTGGCCTTGTTGCTGGTCTCGCCGGTGTGGGAGCATTGCTTGTATATGGTCTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

28.82

Weight (kDa)

9.63

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17170 AT5G17170
fragaria_vesca	FvH4_7g33550 FvH4_7g33550 FvH4_7g33560 FvH4_7g33560 FvH4_7g33560
malus_domestica	MD01G1233200.v1.1 MD07G1305400.v1.1
prunus_persica	Prupe.2G323500_v2.0.a1
pyrus_communis	pycom01g24150 pycom07g27870
rosa_chinensis	RchiOBHm_Chr1g0383771 RchiOBHm_Chr1g0383811
rosa_laevigata	RLG00000026095 RLG00000026096
rosa_multiflora	Rmu_co8230175.1_g000001 Rmu_sc0012471.1_g000008 Rmu_sc0019101.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277220
rosa_rugosa	Rorug01G0442300 Rorug01G0442300
rosa_samantha	Rh1AG468000 Rh1AG468100 Rh1BG425700 Rh1BG425800 Rh1CG438400 Rh1CG438500 Rh1DG458500 Rh1DG458600
rosa_wichuraiana	Rw1G040430 Rw1G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	11
AccB1I	GGYRCC	2 cut(s)	60, 103
AciI	CCGC	2 cut(s)	48, 744
AclI	AACGTT	1 cut(s)	483
AcoI	YGGCCR	1 cut(s)	428
AfaI	GTAC	2 cut(s)	68, 668
AfeI	AGCGCT	1 cut(s)	202
AfiI	CCNNNNNNNGG	5 cut(s)	57, 301, 560, 740, 758
AgsI	TTSAA	2 cut(s)	55, 824
AjnI	CCWGG	2 cut(s)	313, 387
AluBI	AGCT	6 cut(s)	129, 185, 248, 442, 548, 596
AluI	AGCT	6 cut(s)	129, 185, 248, 442, 548, 596
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	2 cut(s)	585, 791
Aor51HI	AGCGCT	1 cut(s)	202
AoxI	GGCC	3 cut(s)	292, 428, 772
ApeKI	GCWGC	3 cut(s)	223, 254, 359
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	385
AsuC2I	CCSGG	1 cut(s)	727
AvaII	GGWCC	1 cut(s)	385
BalI	TGGCCA	1 cut(s)	430
BanI	GGYRCC	2 cut(s)	60, 103
BarI	GAAGNNNNNNTAC	1 cut(s)	804
BbsI	GAAGAC	2 cut(s)	128, 812
Bbv12I	GWGCWC	1 cut(s)	396
BbvCI	CCTCAGC	2 cut(s)	273, 513
BbvI	GCAGC	3 cut(s)	210, 241, 371
BceAI	ACGGC	1 cut(s)	545
BciT130I	CCWGG	2 cut(s)	315, 389
BciVI	GTATCC	1 cut(s)	655
BcnI	CCSGG	1 cut(s)	727
BcoDI	GTCTC	2 cut(s)	585, 791
BfaI	CTAG	3 cut(s)	126, 402, 591
BfoI	RGCGCY	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	655
BisI	GCNGC	4 cut(s)	48, 224, 255, 360
BlpI	GCTNAGC	1 cut(s)	227
BlsI	GCNGC	4 cut(s)	49, 225, 256, 361
Bme1390I	CCNGG	3 cut(s)	315, 389, 727
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	3 cut(s)	62, 105, 386
BmrFI	CCNGG	3 cut(s)	315, 389, 727
BpiI	GAAGAC	2 cut(s)	128, 812
BpmI	CTGGAG	1 cut(s)	336
Bpu10I	CCTNAGC	2 cut(s)	273, 513
Bpu1102I	GCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	727
BsaAI	YACGTR	1 cut(s)	666
BsaI	GGTCTC	1 cut(s)	791
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	658
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	5 cut(s)	57, 301, 560, 740, 758
Bse118I	RCCGGY	2 cut(s)	7, 791
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	2 cut(s)	119, 803
BseBI	CCWGG	2 cut(s)	315, 389
BseDI	CCNNGG	1 cut(s)	133
BseLI	CCNNNNNNNGG	5 cut(s)	57, 301, 560, 740, 758
BseMI	GCAATG	2 cut(s)	119, 803
BseMII	CTCAG	4 cut(s)	92, 177, 264, 504
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	2 cut(s)	540, 543
BseXI	GCAGC	3 cut(s)	210, 241, 371
BseYI	CCCAGC	1 cut(s)	248
BshFI	GGCC	3 cut(s)	294, 430, 774
BshNI	GGYRCC	2 cut(s)	60, 103
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	4 cut(s)	8, 659, 726, 792
BsiWI	CGTACG	1 cut(s)	666
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	5 cut(s)	57, 301, 560, 740, 758
BsmAI	GTCTC	2 cut(s)	585, 791
BsmFI	GGGAC	1 cut(s)	398
BsnI	GGCC	3 cut(s)	294, 430, 774
Bso31I	GGTCTC	1 cut(s)	791
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	1 cut(s)	81
Bsp1720I	GCTNAGC	1 cut(s)	227
BspACI	CCGC	2 cut(s)	48, 744
BspANI	GGCC	3 cut(s)	294, 430, 774
BspCNI	CTCAG	4 cut(s)	91, 178, 265, 505
BspLI	GGNNCC	3 cut(s)	62, 105, 386
BspMI	ACCTGC	1 cut(s)	11
BspT107I	GGYRCC	2 cut(s)	60, 103
BspTNI	GGTCTC	1 cut(s)	791
BsrDI	GCAATG	2 cut(s)	119, 803
BsrFI	RCCGGY	2 cut(s)	7, 791
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	2 cut(s)	7, 791
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	2 cut(s)	315, 389
Bst4CI	ACNGT	2 cut(s)	208, 617
Bst6I	CTCTTC	3 cut(s)	37, 208, 692
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstBAI	YACGTR	1 cut(s)	666
BstC8I	GCNNGC	3 cut(s)	18, 432, 673
BstDEI	CTNAG	5 cut(s)	78, 186, 227, 273, 513
BstENI	CCTNNNNNAGG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	2 cut(s)	585, 791
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 245, 254, 365, 467, 538, 788
BstNI	CCWGG	2 cut(s)	315, 389
BstNSI	RCATGY	1 cut(s)	675
BstSCI	CCNGG	3 cut(s)	313, 387, 725
BstSNI	TACGTA	1 cut(s)	666
BstV1I	GCAGC	3 cut(s)	210, 241, 371
BstV2I	GAAGAC	2 cut(s)	128, 812
BsuI	GTATCC	1 cut(s)	655
BsuRI	GGCC	3 cut(s)	294, 430, 774
BtsI	GCAGTG	2 cut(s)	18, 107
BtsIMutI	CAGTG	2 cut(s)	18, 107
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	3 cut(s)	18, 432, 673
CfoI	GCGC	1 cut(s)	203
Cfr10I	RCCGGY	2 cut(s)	7, 791
Cfr13I	GGNCC	1 cut(s)	385
CseI	GACGC	1 cut(s)	530
CsiI	ACCWGGT	1 cut(s)	387
Csp6I	GTAC	2 cut(s)	67, 667
CviAII	CATG	1 cut(s)	672
CviQI	GTAC	2 cut(s)	67, 667
DdeI	CTNAG	5 cut(s)	78, 186, 227, 273, 513
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	428
Eam1104I	CTCTTC	3 cut(s)	37, 208, 692
EarI	CTCTTC	3 cut(s)	37, 208, 692
Eco105I	TACGTA	1 cut(s)	666
Eco130I	CCWWGG	1 cut(s)	133
Eco147I	AGGCCT	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	791
Eco47I	GGWCC	1 cut(s)	385
Eco47III	AGCGCT	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	313, 387
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	1 cut(s)	675
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	1 cut(s)	671
FauNDI	CATATG	1 cut(s)	605
Fnu4HI	GCNGC	4 cut(s)	48, 224, 255, 360
Fsp4HI	GCNGC	4 cut(s)	48, 224, 255, 360
FspBI	CTAG	3 cut(s)	126, 402, 591
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	4 cut(s)	48, 224, 255, 360
GsaI	CCCAGC	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	336
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	294, 430, 774
HapII	CCGG	4 cut(s)	8, 659, 726, 792
HgaI	GACGC	1 cut(s)	530
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	1 cut(s)	675
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	5 cut(s)	173, 372, 578, 621, 762
HpaII	CCGG	4 cut(s)	8, 659, 726, 792
Hpy166II	GTNNAC	3 cut(s)	280, 487, 721
Hpy188I	TCNGA	2 cut(s)	81, 172
Hpy8I	GTNNAC	3 cut(s)	280, 487, 721
HpyAV	CCTTC	4 cut(s)	61, 187, 338, 558
HpyCH4III	ACNGT	2 cut(s)	208, 617
HpyCH4IV	ACGT	2 cut(s)	483, 665
HpyCH4V	TGCA	6 cut(s)	20, 112, 239, 257, 359, 689
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 245, 254, 365, 467, 538, 788
HpyF3I	CTNAG	5 cut(s)	78, 186, 227, 273, 513
HpySE526I	ACGT	2 cut(s)	483, 665
Hsp92II	CATG	1 cut(s)	675
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	2 cut(s)	553, 800
Lsp1109I	GCAGC	3 cut(s)	210, 241, 371
MabI	ACCWGGT	1 cut(s)	387
MaeI	CTAG	3 cut(s)	126, 402, 591
MaeII	ACGT	2 cut(s)	483, 665
MaeIII	GTNAC	3 cut(s)	3, 141, 325
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	7 cut(s)	18, 24, 27, 133, 225, 709, 812
MfeI	CAATTG	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	396
MlsI	TGGCCA	1 cut(s)	430
MluCI	AATT	2 cut(s)	264, 422
MluNI	TGGCCA	1 cut(s)	430
MlyI	GAGTC	3 cut(s)	366, 587, 771
Mox20I	TGGCCA	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	430
MslI	CAYNNNNRTG	1 cut(s)	112
Msp20I	TGGCCA	1 cut(s)	430
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	4 cut(s)	8, 659, 726, 792
MspR9I	CCNGG	3 cut(s)	315, 389, 727
MunI	CAATTG	1 cut(s)	264
MvaI	CCWGG	2 cut(s)	315, 389
MwoI	GCNNNNNNNGC	7 cut(s)	17, 245, 254, 365, 467, 538, 788
NciI	CCSGG	1 cut(s)	727
NdeI	CATATG	1 cut(s)	605
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	675
NlaIV	GGNNCC	3 cut(s)	62, 105, 386
NmuCI	GTSAC	2 cut(s)	3, 141
NspI	RCATGY	1 cut(s)	675
PaeI	GCATGC	1 cut(s)	675
PceI	AGGCCT	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	173, 621
Pfl23II	CGTACG	1 cut(s)	666
PkrI	GCNGC	4 cut(s)	49, 225, 256, 361
PleI	GAGTC	3 cut(s)	366, 586, 770
PpsI	GAGTC	3 cut(s)	366, 586, 770
Ppu21I	YACGTR	1 cut(s)	666
Psp1406I	AACGTT	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	313, 387
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	2 cut(s)	313, 387
PspLI	CGTACG	1 cut(s)	666
PspN4I	GGNNCC	3 cut(s)	62, 105, 386
PspPI	GGNCC	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	2 cut(s)	68, 668
RsaNI	GTAC	2 cut(s)	67, 667
RseI	CAYNNNNRTG	1 cut(s)	112
SatI	GCNGC	4 cut(s)	48, 224, 255, 360
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	385
SchI	GAGTC	3 cut(s)	366, 587, 771
ScrFI	CCNGG	3 cut(s)	315, 389, 727
SduI	GDGCHC	1 cut(s)	396
SexAI	ACCWGGT	1 cut(s)	387
SgrAI	CRCCGGYG	1 cut(s)	791
SinI	GGWCC	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SnaBI	TACGTA	1 cut(s)	666
SphI	GCATGC	1 cut(s)	675
Sse9I	AATT	2 cut(s)	264, 422
SseBI	AGGCCT	1 cut(s)	294
SsiI	CCGC	2 cut(s)	48, 744
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	3 cut(s)	126, 402, 591
StuI	AGGCCT	1 cut(s)	294
StyD4I	CCNGG	3 cut(s)	313, 387, 725
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	208, 617
TaiI	ACGT	2 cut(s)	486, 668
TasI	AATT	2 cut(s)	264, 422
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	173, 621
TscAI	CASTG	2 cut(s)	18, 114
TseFI	GTSAC	2 cut(s)	3, 141
TseI	GCWGC	3 cut(s)	223, 254, 359
Tsp45I	GTSAC	2 cut(s)	3, 141
TspDTI	ATGAA	4 cut(s)	169, 435, 613, 666
TspRI	CASTG	2 cut(s)	18, 114
VpaK11BI	GGWCC	1 cut(s)	385
XagI	CCTNNNNNAGG	1 cut(s)	55
XceI	RCATGY	1 cut(s)	675
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XspI	CTAG	3 cut(s)	126, 402, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.