Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004389

Physical Location & Seq

Genomic Coordinates Forward (+)

32127706 .. 32129469

Gene Structure 1764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1233200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCACAGGCGGTGCTTGCCGCTGCTTCCTCCTCCTCCTCCTCTTGCTCCGCTGCATTCAAAAGGCACCACTCGACAAGAACTCCACAGTTCACAACTCCAAAACAATTGGCACCAATCCAATGCCAGAAAACTAGCTTCCAAGGATTGTCGCTTGGAGAAGCCAAAAGGGGAGTGTTTGATTCTTTGCTGGTAGCTGCTGAGAATAACAGGAGTGGTTTAGGCAACAACAACGTAGGGAGAGGAAGAGGGCTTAGGGTTACAGCAAGAACTGCAGGGGCTCCCAAGTCGATTGAGGCTGAGGTGGACAATCCATTAGGCCTCACTTTGGGTCAAAAGCCCGGAGGTCCTGTTACCATCACAGCTGTGGATGGAGGTGGGAATGCAGCAAAGGCAGGGCTTAAGGCAGGGGACCAAGTCCTCTACACTAGCAGCGTCTTTGGTGATGAAGTATGGCCAGCAGATAAACTAGGGTTTACAAAAACTGCCATCAATGCCAAGCCAGACTCTGTTTACTTCGCTAGAGCTACTCACATATGCCTCGACTGTGGATTCATATACACATTACAGAAGCCCTTTGATGAGCAGCCGGATGCGTACGCATGCCCTCAATGTCTAGCACCAAAGAAGCGGTTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

22.33

Weight (kDa)

9.3

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17170 AT5G17170
fragaria_vesca	FvH4_7g33550 FvH4_7g33550 FvH4_7g33560 FvH4_7g33560 FvH4_7g33560
malus_domestica	MD01G1233200.v1.1 MD07G1305400.v1.1
prunus_persica	Prupe.2G323500_v2.0.a1
pyrus_communis	pycom01g24150 pycom07g27870
rosa_chinensis	RchiOBHm_Chr1g0383771 RchiOBHm_Chr1g0383811
rosa_laevigata	RLG00000026095 RLG00000026096
rosa_multiflora	Rmu_co8230175.1_g000001 Rmu_sc0012471.1_g000008 Rmu_sc0019101.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277220
rosa_rugosa	Rorug01G0442300 Rorug01G0442300
rosa_samantha	Rh1AG468000 Rh1AG468100 Rh1BG425700 Rh1BG425800 Rh1CG438400 Rh1CG438500 Rh1DG458500 Rh1DG458600
rosa_wichuraiana	Rw1G040430 Rw1G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	66, 112
AciI	CCGC	4 cut(s)	11, 21, 51, 631
AcoI	YGGCCR	1 cut(s)	455
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	1 cut(s)	328
AflII	CTTAAG	1 cut(s)	401
AgsI	TTSAA	1 cut(s)	61
AleI	CACNNNNGTG	1 cut(s)	365
AluBI	AGCT	4 cut(s)	138, 197, 365, 527
AluI	AGCT	4 cut(s)	138, 197, 365, 527
AlwNI	CAGNNNCTG	1 cut(s)	509
AoxI	GGCC	2 cut(s)	319, 455
ApeKI	GCWGC	6 cut(s)	23, 53, 197, 386, 432, 586
AspS9I	GGNCC	2 cut(s)	347, 412
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	1 cut(s)	455
AvaII	GGWCC	2 cut(s)	347, 412
BalI	TGGCCA	1 cut(s)	457
BanI	GGYRCC	2 cut(s)	66, 112
BanII	GRGCYC	1 cut(s)	283
BbvCI	CCTCAGC	1 cut(s)	300
BbvI	GCAGC	6 cut(s)	10, 40, 184, 398, 444, 598
BccI	CCATC	3 cut(s)	365, 365, 497
BcnI	CCSGG	1 cut(s)	342
BfaI	CTAG	5 cut(s)	135, 429, 470, 522, 617
BfmI	CTRYAG	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	401
BisI	GCNGC	7 cut(s)	21, 24, 54, 198, 387, 433, 587
BlsI	GCNGC	7 cut(s)	22, 25, 55, 199, 388, 434, 588
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	2 cut(s)	347, 412
BmgT120I	GGNCC	2 cut(s)	347, 412
BmiI	GGNNCC	4 cut(s)	68, 114, 282, 413
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	1 cut(s)	583
Bpu10I	CCTNAGC	2 cut(s)	254, 300
BpuMI	CCSGG	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	142
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 336, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	2 cut(s)	376, 598
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	2 cut(s)	192, 291
BseRI	GAGGAG	4 cut(s)	22, 25, 28, 31
BseXI	GCAGC	6 cut(s)	10, 40, 184, 398, 444, 598
BshFI	GGCC	2 cut(s)	321, 457
BshNI	GGYRCC	2 cut(s)	66, 112
BsiSI	CCGG	2 cut(s)	342, 590
BsiWI	CGTACG	1 cut(s)	597
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	2 cut(s)	56, 388
BsnI	GGCC	2 cut(s)	321, 457
Bsp1286I	GDGCHC	1 cut(s)	283
BspACI	CCGC	4 cut(s)	11, 21, 51, 631
BspANI	GGCC	2 cut(s)	321, 457
BspCNI	CTCAG	2 cut(s)	193, 292
BspLI	GGNNCC	4 cut(s)	68, 114, 282, 413
BspMAI	CTGCAG	1 cut(s)	277
BspT107I	GGYRCC	2 cut(s)	66, 112
BspTI	CTTAAG	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	142
Bst4CI	ACNGT	2 cut(s)	90, 548
Bst6I	CTCTTC	1 cut(s)	241
BstAFI	CTTAAG	1 cut(s)	401
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	3 cut(s)	18, 459, 604
BstDEI	CTNAG	3 cut(s)	201, 254, 300
BstF5I	GGATG	2 cut(s)	376, 598
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 272, 392, 494
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	6 cut(s)	10, 40, 184, 398, 444, 598
BsuRI	GGCC	2 cut(s)	321, 457
BtsCI	GGATG	2 cut(s)	376, 598
Cac8I	GCNNGC	3 cut(s)	18, 459, 604
CaiI	CAGNNNCTG	1 cut(s)	509
Cfr13I	GGNCC	2 cut(s)	347, 412
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	598
CviAII	CATG	2 cut(s)	603, 639
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	3 cut(s)	201, 254, 300
EaeI	YGGCCR	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	142
Eco147I	AGGCCT	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	283
Eco47I	GGWCC	2 cut(s)	347, 412
EcoO109I	RGGNCCY	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	606, 642
FaiI	YATR	7 cut(s)	454, 536, 538, 557, 559, 604, 640
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	2 cut(s)	602, 638
FauNDI	CATATG	1 cut(s)	536
Fnu4HI	GCNGC	7 cut(s)	21, 24, 54, 198, 387, 433, 587
FokI	GGATG	2 cut(s)	383, 605
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	7 cut(s)	21, 24, 54, 198, 387, 433, 587
FspBI	CTAG	5 cut(s)	135, 429, 470, 522, 617
GluI	GCNGC	7 cut(s)	21, 24, 54, 198, 387, 433, 587
HaeIII	GGCC	2 cut(s)	321, 457
HapII	CCGG	2 cut(s)	342, 590
HgaI	GACGC	1 cut(s)	424
Hin1II	CATG	2 cut(s)	606, 642
HinfI	GANTC	3 cut(s)	182, 506, 552
HpaII	CCGG	2 cut(s)	342, 590
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	4 cut(s)	93, 307, 477, 514
Hpy8I	GTNNAC	4 cut(s)	93, 307, 477, 514
HpyCH4III	ACNGT	2 cut(s)	90, 548
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	4 cut(s)	56, 275, 386, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 272, 392, 494
HpyF3I	CTNAG	3 cut(s)	201, 254, 300
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	606, 642
LmnI	GCTCC	2 cut(s)	53, 286
Lsp1109I	GCAGC	6 cut(s)	10, 40, 184, 398, 444, 598
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	5 cut(s)	135, 429, 470, 522, 617
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	3 cut(s)	3, 259, 352
MboII	GAAGA	1 cut(s)	258
MfeI	CAATTG	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	283
MlsI	TGGCCA	1 cut(s)	457
MluCI	AATT	1 cut(s)	107
MluNI	TGGCCA	1 cut(s)	457
MlyI	GAGTC	1 cut(s)	500
Mox20I	TGGCCA	1 cut(s)	457
MscI	TGGCCA	1 cut(s)	457
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	365
Msp20I	TGGCCA	1 cut(s)	457
MspA1I	CMGCKG	3 cut(s)	23, 53, 365
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	2 cut(s)	342, 590
MspR9I	CCNGG	1 cut(s)	342
MunI	CAATTG	1 cut(s)	107
Mva1269I	GAATGC	2 cut(s)	56, 388
MwoI	GCNNNNNNNGC	4 cut(s)	17, 272, 392, 494
NciI	CCSGG	1 cut(s)	342
NdeI	CATATG	1 cut(s)	536
NlaIII	CATG	2 cut(s)	606, 642
NlaIV	GGNNCC	4 cut(s)	68, 114, 282, 413
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	606
OliI	CACNNNNGTG	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	606
PceI	AGGCCT	1 cut(s)	321
PctI	GAATGC	2 cut(s)	56, 388
PfeI	GAWTC	2 cut(s)	182, 552
Pfl23II	CGTACG	1 cut(s)	597
PflFI	GACNNNGTC	1 cut(s)	416
PkrI	GCNGC	7 cut(s)	22, 25, 55, 199, 388, 434, 588
PleI	GAGTC	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	500
PpuMI	RGGWCCY	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	347
PspLI	CGTACG	1 cut(s)	597
PspN4I	GGNNCC	4 cut(s)	68, 114, 282, 413
PspPI	GGNCC	2 cut(s)	347, 412
PspPPI	RGGWCCY	1 cut(s)	347
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	509
PsyI	GACNNNGTC	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
RseI	CAYNNNNRTG	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	7 cut(s)	21, 24, 54, 198, 387, 433, 587
Sau96I	GGNCC	2 cut(s)	347, 412
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	283
SetI	ASST	8 cut(s)	140, 199, 237, 306, 349, 367, 379, 529
SfaNI	GCATC	1 cut(s)	583
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	2 cut(s)	347, 412
SmiMI	CAYNNNNRTG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SphI	GCATGC	1 cut(s)	606
Sse9I	AATT	1 cut(s)	107
SseBI	AGGCCT	1 cut(s)	321
SsiI	CCGC	4 cut(s)	11, 21, 51, 631
SspMI	CTAG	5 cut(s)	135, 429, 470, 522, 617
StuI	AGGCCT	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	2 cut(s)	90, 548
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	3 cut(s)	74, 290, 543
TasI	AATT	1 cut(s)	107
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	182, 552
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	6 cut(s)	23, 53, 197, 386, 432, 586
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	462, 544
Tth111I	GACNNNGTC	1 cut(s)	416
Vha464I	CTTAAG	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	347, 412
XceI	RCATGY	1 cut(s)	606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XspI	CTAG	5 cut(s)	135, 429, 470, 522, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.