Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004389

Physical Location & Seq

Genomic Coordinates Reverse (-)

510513 .. 512095

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026096

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCACCGGCGGTGCTTGCAGGTTCTTCCTCTTCTTCTTGCGCTGCCACTTTCAACAGGCACCAGTACTCCATCAAAATTCCACAGATCACTACCCCAAAATCATTGGCACAACTACAATGTCAGAAGACTAGCTTCCAAGGGTTGTCACTTGGAGAAGCCAAAAGGGGTGTATCTGAATCCTTCGTAGCTGAGAATAGTAGCAGTGCTACTGTTAGAAGAGGTCGGCTACTCAGCATAGTTGCAAGAACAGCTGGAGCTGCAAAGACAATTGAGGCTGAGGTTGACAAGCCATTAGGCCTCACTTTGGGTCAAAAGCCTGAAGGTGGTGTTACCATCACTGCCGTGGAAGGAGGTGGAAATGCAGCAAAGGCAGGGCTCAAGGCAGGAGATCAGGTGCTCTACACTAGCAGCTTCTTTGGAGATGAATTATGGCCAGCGGATAAGCTTGGATTTACTAAAACTGCCATCAACGCCAAGCCGGACAACGTTTACTTTGTTGTTAGCAGAGGTGGTGCTGAAGTAGATGTTAAACGGCTACCAAAGCGTCCAGCTCCTCCTCGCTTTGGAAGGAAACTAACCGAGTCTCAAAAGGCTAGGGCTACTCACATATGCCTTGACTGTGGATTCATTTACACACTATCAAAGCCTTTTGATGAGCAGCCGGATTCGTACGTATGCCCTCAGTGTAGGGCACCGAAGAAGAGGTTTGCAGGATATGATGTCAACACAGGGAAACCTATCGGTGGCGGTTTGCCTCCTATTGGGGTCATTATCGGCCTTGTCGCTGGTGTTGCCGGTGTGGGAGCATTGCTTGTATATGGTCTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

29.03

Weight (kDa)

9.56

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17170 AT5G17170
fragaria_vesca	FvH4_7g33550 FvH4_7g33550 FvH4_7g33560 FvH4_7g33560 FvH4_7g33560
malus_domestica	MD01G1233200.v1.1 MD07G1305400.v1.1
prunus_persica	Prupe.2G323500_v2.0.a1
pyrus_communis	pycom01g24150 pycom07g27870
rosa_chinensis	RchiOBHm_Chr1g0383771 RchiOBHm_Chr1g0383811
rosa_laevigata	RLG00000026095 RLG00000026096
rosa_multiflora	Rmu_co8230175.1_g000001 Rmu_sc0012471.1_g000008 Rmu_sc0019101.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277220
rosa_rugosa	Rorug01G0442300 Rorug01G0442300
rosa_samantha	Rh1AG468000 Rh1AG468100 Rh1BG425700 Rh1BG425800 Rh1CG438400 Rh1CG438500 Rh1DG458500 Rh1DG458600
rosa_wichuraiana	Rw1G040430 Rw1G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	11
AccB1I	GGYRCC	2 cut(s)	60, 694
AciI	CCGC	3 cut(s)	11, 440, 750
AclI	AACGTT	1 cut(s)	489
AcoI	YGGCCR	1 cut(s)	434
AcsI	RAATTY	1 cut(s)	78
AcuI	CTGAAG	2 cut(s)	342, 540
AfaI	GTAC	2 cut(s)	68, 674
AfiI	CCNNNNNNNGG	5 cut(s)	307, 326, 566, 746, 764
AgsI	TTSAA	2 cut(s)	55, 830
AleI	CACNNNNGTG	1 cut(s)	344
AluBI	AGCT	7 cut(s)	135, 191, 254, 260, 414, 448, 554
AluI	AGCT	7 cut(s)	135, 191, 254, 260, 414, 448, 554
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	1 cut(s)	591
AoxI	GGCC	3 cut(s)	298, 434, 778
ApeKI	GCWGC	5 cut(s)	44, 260, 365, 411, 661
ApoI	RAATTY	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	697
BalI	TGGCCA	1 cut(s)	436
BanI	GGYRCC	2 cut(s)	60, 694
BanII	GRGCYC	1 cut(s)	381
BarI	GAAGNNNNNNTAC	1 cut(s)	810
BbsI	GAAGAC	2 cut(s)	134, 818
Bbv12I	GWGCWC	1 cut(s)	402
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	5 cut(s)	31, 247, 377, 423, 673
BccI	CCATC	3 cut(s)	80, 344, 476
BceAI	ACGGC	2 cut(s)	329, 551
BcoDI	GTCTC	1 cut(s)	591
BfaI	CTAG	3 cut(s)	132, 408, 597
BfuAI	ACCTGC	1 cut(s)	11
BisI	GCNGC	5 cut(s)	45, 261, 366, 412, 662
BlsI	GCNGC	5 cut(s)	46, 262, 367, 413, 663
BmcAI	AGTACT	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	62, 696
BpiI	GAAGAC	2 cut(s)	134, 818
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	676
BsaJI	CCNNGG	2 cut(s)	139, 345
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 381, 411
Bsc4I	CCNNNNNNNGG	5 cut(s)	307, 326, 566, 746, 764
Bse118I	RCCGGY	2 cut(s)	7, 797
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	809
BseDI	CCNNGG	2 cut(s)	139, 345
BseLI	CCNNNNNNNGG	5 cut(s)	307, 326, 566, 746, 764
BseMI	GCAATG	1 cut(s)	809
BseMII	CTCAG	4 cut(s)	183, 247, 270, 698
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	2 cut(s)	546, 549
BseSI	GKGCMC	1 cut(s)	697
BseXI	GCAGC	5 cut(s)	31, 247, 377, 423, 673
BshFI	GGCC	3 cut(s)	300, 436, 780
BshNI	GGYRCC	2 cut(s)	60, 694
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	4 cut(s)	8, 482, 665, 798
BsiWI	CGTACG	1 cut(s)	672
BslI	CCNNNNNNNGG	5 cut(s)	307, 326, 566, 746, 764
BsmAI	GTCTC	1 cut(s)	591
BsnI	GGCC	3 cut(s)	300, 436, 780
Bsp1286I	GDGCHC	3 cut(s)	381, 402, 697
Bsp143I	GATC	2 cut(s)	87, 391
BspACI	CCGC	3 cut(s)	11, 440, 750
BspANI	GGCC	3 cut(s)	300, 436, 780
BspCNI	CTCAG	4 cut(s)	184, 246, 271, 697
BspLI	GGNNCC	2 cut(s)	62, 696
BspMI	ACCTGC	1 cut(s)	11
BspT107I	GGYRCC	2 cut(s)	60, 694
BsrDI	GCAATG	1 cut(s)	809
BsrFI	RCCGGY	2 cut(s)	7, 797
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	2 cut(s)	7, 797
BssECI	CCNNGG	2 cut(s)	139, 345
BssMI	GATC	2 cut(s)	87, 391
BssT1I	CCWWGG	1 cut(s)	139
Bst4CI	ACNGT	2 cut(s)	214, 623
Bst6I	CTCTTC	3 cut(s)	37, 214, 698
BstBAI	YACGTR	1 cut(s)	676
BstC8I	GCNNGC	2 cut(s)	18, 438
BstDEI	CTNAG	4 cut(s)	192, 233, 279, 684
BstDSI	CCRYGG	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	90, 394
BstMAI	GTCTC	1 cut(s)	591
BstMBI	GATC	2 cut(s)	87, 391
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 251, 260, 371, 473, 544, 794
BstSLI	GKGCMC	1 cut(s)	697
BstSNI	TACGTA	1 cut(s)	676
BstV1I	GCAGC	5 cut(s)	31, 247, 377, 423, 673
BstV2I	GAAGAC	2 cut(s)	134, 818
BsuRI	GGCC	3 cut(s)	300, 436, 780
BtgI	CCRYGG	1 cut(s)	345
BtsI	GCAGTG	2 cut(s)	211, 339
BtsIMutI	CAGTG	3 cut(s)	211, 339, 692
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	18, 438
CfoI	GCGC	1 cut(s)	44
Cfr10I	RCCGGY	2 cut(s)	7, 797
CseI	GACGC	1 cut(s)	536
Csp6I	GTAC	2 cut(s)	67, 673
CviQI	GTAC	2 cut(s)	67, 673
DdeI	CTNAG	4 cut(s)	192, 233, 279, 684
DpnI	GATC	2 cut(s)	89, 393
DpnII	GATC	2 cut(s)	87, 391
EaeI	YGGCCR	1 cut(s)	434
Eam1104I	CTCTTC	3 cut(s)	37, 214, 698
EarI	CTCTTC	3 cut(s)	37, 214, 698
Eco105I	TACGTA	1 cut(s)	676
Eco130I	CCWWGG	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	381
Eco57I	CTGAAG	2 cut(s)	342, 540
EcoT14I	CCWWGG	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	139
FaiI	YATR	8 cut(s)	239, 433, 611, 613, 679, 720, 820, 822
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FauNDI	CATATG	1 cut(s)	611
Fnu4HI	GCNGC	5 cut(s)	45, 261, 366, 412, 662
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	5 cut(s)	45, 261, 366, 412, 662
FspBI	CTAG	3 cut(s)	132, 408, 597
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	5 cut(s)	45, 261, 366, 412, 662
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	3 cut(s)	300, 436, 780
HapII	CCGG	4 cut(s)	8, 482, 665, 798
HgaI	GACGC	1 cut(s)	536
HhaI	GCGC	1 cut(s)	44
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	2 cut(s)	286, 727
HindII	GTYRAC	2 cut(s)	286, 727
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	4 cut(s)	179, 584, 627, 668
HpaII	CCGG	4 cut(s)	8, 482, 665, 798
Hpy166II	GTNNAC	3 cut(s)	286, 493, 727
Hpy188I	TCNGA	2 cut(s)	126, 178
Hpy8I	GTNNAC	3 cut(s)	286, 493, 727
HpyAV	CCTTC	4 cut(s)	193, 317, 344, 564
HpyCH4III	ACNGT	2 cut(s)	214, 623
HpyCH4IV	ACGT	2 cut(s)	489, 675
HpyCH4V	TGCA	5 cut(s)	20, 245, 263, 365, 713
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 251, 260, 371, 473, 544, 794
HpyF3I	CTNAG	4 cut(s)	192, 233, 279, 684
HpySE526I	ACGT	2 cut(s)	489, 675
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	87, 391
LmnI	GCTCC	3 cut(s)	257, 559, 806
Lsp1109I	GCAGC	5 cut(s)	31, 247, 377, 423, 673
MaeI	CTAG	3 cut(s)	132, 408, 597
MaeII	ACGT	2 cut(s)	489, 675
MaeIII	GTNAC	3 cut(s)	3, 147, 331
MalI	GATC	2 cut(s)	89, 393
MboI	GATC	2 cut(s)	87, 391
MboII	GAAGA	8 cut(s)	18, 24, 27, 139, 231, 712, 715, 818
MfeI	CAATTG	1 cut(s)	270
MhlI	GDGCHC	3 cut(s)	381, 402, 697
MlsI	TGGCCA	1 cut(s)	436
MluCI	AATT	3 cut(s)	78, 270, 428
MluNI	TGGCCA	1 cut(s)	436
MlyI	GAGTC	1 cut(s)	593
Mox20I	TGGCCA	1 cut(s)	436
MscI	TGGCCA	1 cut(s)	436
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	1 cut(s)	344
Msp20I	TGGCCA	1 cut(s)	436
MspA1I	CMGCKG	2 cut(s)	254, 440
MspI	CCGG	4 cut(s)	8, 482, 665, 798
MunI	CAATTG	1 cut(s)	270
MwoI	GCNNNNNNNGC	7 cut(s)	17, 251, 260, 371, 473, 544, 794
NdeI	CATATG	1 cut(s)	611
NdeII	GATC	2 cut(s)	87, 391
NlaIV	GGNNCC	2 cut(s)	62, 696
NmuCI	GTSAC	2 cut(s)	3, 147
OliI	CACNNNNGTG	1 cut(s)	344
PceI	AGGCCT	1 cut(s)	300
PfeI	GAWTC	3 cut(s)	179, 627, 668
Pfl23II	CGTACG	1 cut(s)	672
PkrI	GCNGC	5 cut(s)	46, 262, 367, 413, 663
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
Ppu21I	YACGTR	1 cut(s)	676
Psp1406I	AACGTT	1 cut(s)	489
PspLI	CGTACG	1 cut(s)	672
PspN4I	GGNNCC	2 cut(s)	62, 696
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	68, 674
RsaNI	GTAC	2 cut(s)	67, 673
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	5 cut(s)	45, 261, 366, 412, 662
Sau3AI	GATC	2 cut(s)	87, 391
ScaI	AGTACT	1 cut(s)	68
SchI	GAGTC	1 cut(s)	593
SduI	GDGCHC	3 cut(s)	381, 402, 697
SgrAI	CRCCGGYG	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
SnaBI	TACGTA	1 cut(s)	676
Sse9I	AATT	3 cut(s)	78, 270, 428
SseBI	AGGCCT	1 cut(s)	300
SsiI	CCGC	3 cut(s)	11, 440, 750
SspMI	CTAG	3 cut(s)	132, 408, 597
StuI	AGGCCT	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	2 cut(s)	214, 623
TaiI	ACGT	2 cut(s)	492, 678
TasI	AATT	3 cut(s)	78, 270, 428
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	3 cut(s)	179, 627, 668
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	3 cut(s)	211, 346, 692
TseFI	GTSAC	2 cut(s)	3, 147
TseI	GCWGC	5 cut(s)	44, 260, 365, 411, 661
Tsp45I	GTSAC	2 cut(s)	3, 147
TspDTI	ATGAA	2 cut(s)	441, 619
TspRI	CASTG	3 cut(s)	211, 346, 692
XapI	RAATTY	1 cut(s)	78
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XspI	CTAG	3 cut(s)	132, 408, 597
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.