Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004389

Physical Location & Seq

Genomic Coordinates Forward (+)

54399367 .. 54400849

Gene Structure 1483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG425700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCACCGGCGGTGCTTGCAGGTTCTTCCTCTTCTTCTTGCTCTGCCACTTTCAACAGGCACCAGTACTTCATCAAAACTCCACAGATCACTACCCCAAAATCATTGGCACCACTACAATGTCAGAAGACTAGCTTCCAAGGGTTGTCACTTGGAGAAGCCAAAAGGGGTGTATCTGAATCCTTCGTAGCTGAGAATGTTAGTAGTACTACTGTAAGAAGAGGTCGGCTTCTTGGCATAGTTGCAAGAACAGCAGGGGCTGCAAAGACAATTGAGGCTGAGGTTGACAAGCCATTAGGCCTCACTTTGGGTCAAAAGCCTGGAGGTGGTGTTACCATCACTGCTGTAGAAGGAGGTGGGAATGCAGCAAAGGCAGGGCTCAAAGCAGGGGATCAGGTGATCTACACTAGCAGCTTCTTCGGAGATGAATTATGGCCAGCAGATAAGCTTGGATTTACTAAAACTGCCATCAACGCCAAGCCCGACAACGTTTACTTTGTCGTTAGCAGAGGTGGTGCTGAAGTAGACGTTAAACGGCTACCAAAGCGTCCAGCTCCTCCTCGCTTTGGAAGGAAACTAACCGAGTCTCAAAAGGCTAGAGCTACTCACATATGCCTTGACTGTGGATTCATATACACATTATCAAAACCTTTTGATGAGCAGCCGGAAACGTACGTATGCCCTCAATGTATAGCACCAAAGAAGAGGTTTGCAAGATATGATGTCAACACAGGGAAACCTATCGGTGGCGGTTTGCCTCCTATTGGAGTCATTATTGGCCTCGTCGCTGGTGTTGCCGGTGTGGGAGCATTGCTTGTATATGGTCTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

29.09

Weight (kDa)

9.63

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17170 AT5G17170
fragaria_vesca	FvH4_7g33550 FvH4_7g33550 FvH4_7g33560 FvH4_7g33560 FvH4_7g33560
malus_domestica	MD01G1233200.v1.1 MD07G1305400.v1.1
prunus_persica	Prupe.2G323500_v2.0.a1
pyrus_communis	pycom01g24150 pycom07g27870
rosa_chinensis	RchiOBHm_Chr1g0383771 RchiOBHm_Chr1g0383811
rosa_laevigata	RLG00000026095 RLG00000026096
rosa_multiflora	Rmu_co8230175.1_g000001 Rmu_sc0012471.1_g000008 Rmu_sc0019101.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277220
rosa_rugosa	Rorug01G0442300 Rorug01G0442300
rosa_samantha	Rh1AG468000 Rh1AG468100 Rh1BG425700 Rh1BG425800 Rh1CG438400 Rh1CG438500 Rh1DG458500 Rh1DG458600
rosa_wichuraiana	Rw1G040430 Rw1G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	11
AccB1I	GGYRCC	2 cut(s)	60, 109
AccI	GTMKAC	1 cut(s)	525
AciI	CCGC	2 cut(s)	11, 750
AclI	AACGTT	1 cut(s)	489
AclWI	GGATC	1 cut(s)	399
AcoI	YGGCCR	1 cut(s)	434
AcuI	CTGAAG	1 cut(s)	540
AfaI	GTAC	3 cut(s)	68, 208, 674
AfiI	CCNNNNNNNGG	5 cut(s)	307, 326, 566, 746, 764
AgsI	TTSAA	2 cut(s)	55, 830
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	6 cut(s)	135, 191, 414, 448, 554, 602
AluI	AGCT	6 cut(s)	135, 191, 414, 448, 554, 602
Alw26I	GTCTC	1 cut(s)	591
AlwI	GGATC	1 cut(s)	399
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	3 cut(s)	298, 434, 778
ApeKI	GCWGC	4 cut(s)	260, 365, 411, 661
AsuHPI	GGTGA	1 cut(s)	409
BalI	TGGCCA	1 cut(s)	436
BanI	GGYRCC	2 cut(s)	60, 109
BanII	GRGCYC	1 cut(s)	381
BarI	GAAGNNNNNNTAC	1 cut(s)	810
BbsI	GAAGAC	2 cut(s)	134, 818
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	4 cut(s)	247, 377, 423, 673
BccI	CCATC	2 cut(s)	344, 476
BceAI	ACGGC	1 cut(s)	551
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	591
BfaI	CTAG	3 cut(s)	132, 408, 597
BfmI	CTRYAG	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	11
BisI	GCNGC	4 cut(s)	261, 366, 412, 662
BlsI	GCNGC	4 cut(s)	262, 367, 413, 663
BmcAI	AGTACT	2 cut(s)	68, 208
Bme1390I	CCNGG	1 cut(s)	321
BmiI	GGNNCC	2 cut(s)	62, 111
BmrFI	CCNGG	1 cut(s)	321
BpiI	GAAGAC	2 cut(s)	134, 818
BpmI	CTGGAG	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	676
BsaJI	CCNNGG	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	5 cut(s)	307, 326, 566, 746, 764
Bse118I	RCCGGY	2 cut(s)	7, 797
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	809
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	139
BseLI	CCNNNNNNNGG	5 cut(s)	307, 326, 566, 746, 764
BseMI	GCAATG	1 cut(s)	809
BseMII	CTCAG	2 cut(s)	183, 270
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	2 cut(s)	546, 549
BseXI	GCAGC	4 cut(s)	247, 377, 423, 673
BshFI	GGCC	3 cut(s)	300, 436, 780
BshNI	GGYRCC	2 cut(s)	60, 109
BsiSI	CCGG	3 cut(s)	8, 665, 798
BsiWI	CGTACG	1 cut(s)	672
BslI	CCNNNNNNNGG	5 cut(s)	307, 326, 566, 746, 764
BsmAI	GTCTC	1 cut(s)	591
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	3 cut(s)	300, 436, 780
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	3 cut(s)	87, 391, 399
BspACI	CCGC	2 cut(s)	11, 750
BspANI	GGCC	3 cut(s)	300, 436, 780
BspCNI	CTCAG	2 cut(s)	184, 271
BspLI	GGNNCC	2 cut(s)	62, 111
BspMI	ACCTGC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	399
BspT107I	GGYRCC	2 cut(s)	60, 109
BsrDI	GCAATG	1 cut(s)	809
BsrFI	RCCGGY	2 cut(s)	7, 797
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	2 cut(s)	7, 797
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	3 cut(s)	87, 391, 399
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	214, 623
Bst6I	CTCTTC	3 cut(s)	37, 214, 698
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstBAI	YACGTR	1 cut(s)	676
BstC8I	GCNNGC	2 cut(s)	18, 438
BstDEI	CTNAG	2 cut(s)	192, 279
BstKTI	GATC	3 cut(s)	90, 394, 402
BstMAI	GTCTC	1 cut(s)	591
BstMBI	GATC	3 cut(s)	87, 391, 399
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 251, 260, 371, 473, 544, 794
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	345
BstSNI	TACGTA	1 cut(s)	676
BstV1I	GCAGC	4 cut(s)	247, 377, 423, 673
BstV2I	GAAGAC	2 cut(s)	134, 818
BsuRI	GGCC	3 cut(s)	300, 436, 780
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	339
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	18, 438
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr10I	RCCGGY	2 cut(s)	7, 797
CseI	GACGC	1 cut(s)	536
Csp6I	GTAC	3 cut(s)	67, 207, 673
CviQI	GTAC	3 cut(s)	67, 207, 673
DdeI	CTNAG	2 cut(s)	192, 279
DpnI	GATC	3 cut(s)	89, 393, 401
DpnII	GATC	3 cut(s)	87, 391, 399
EaeI	YGGCCR	1 cut(s)	434
Eam1104I	CTCTTC	3 cut(s)	37, 214, 698
EarI	CTCTTC	3 cut(s)	37, 214, 698
Eco105I	TACGTA	1 cut(s)	676
Eco130I	CCWWGG	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	540
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	139
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FauNDI	CATATG	1 cut(s)	611
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	4 cut(s)	261, 366, 412, 662
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	4 cut(s)	261, 366, 412, 662
FspBI	CTAG	3 cut(s)	132, 408, 597
GluI	GCNGC	4 cut(s)	261, 366, 412, 662
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	3 cut(s)	300, 436, 780
HapII	CCGG	3 cut(s)	8, 665, 798
HgaI	GACGC	1 cut(s)	536
HincII	GTYRAC	2 cut(s)	286, 727
HindII	GTYRAC	2 cut(s)	286, 727
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	4 cut(s)	179, 584, 627, 768
HpaII	CCGG	3 cut(s)	8, 665, 798
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	4 cut(s)	286, 493, 526, 727
Hpy188I	TCNGA	3 cut(s)	126, 178, 422
Hpy8I	GTNNAC	4 cut(s)	286, 493, 526, 727
Hpy99I	CGWCG	1 cut(s)	788
HpyAV	CCTTC	3 cut(s)	193, 344, 564
HpyCH4III	ACNGT	2 cut(s)	214, 623
HpyCH4IV	ACGT	4 cut(s)	489, 528, 671, 675
HpyCH4V	TGCA	5 cut(s)	20, 245, 263, 365, 713
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 251, 260, 371, 473, 544, 794
HpyF3I	CTNAG	2 cut(s)	192, 279
HpySE526I	ACGT	4 cut(s)	489, 528, 671, 675
Kzo9I	GATC	3 cut(s)	87, 391, 399
LmnI	GCTCC	2 cut(s)	559, 806
Lsp1109I	GCAGC	4 cut(s)	247, 377, 423, 673
MaeI	CTAG	3 cut(s)	132, 408, 597
MaeII	ACGT	4 cut(s)	489, 528, 671, 675
MaeIII	GTNAC	3 cut(s)	3, 147, 331
MalI	GATC	3 cut(s)	89, 393, 401
MboI	GATC	3 cut(s)	87, 391, 399
MboII	GAAGA	8 cut(s)	18, 24, 27, 139, 231, 409, 715, 818
MfeI	CAATTG	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	381
MlsI	TGGCCA	1 cut(s)	436
MluCI	AATT	2 cut(s)	270, 428
MluNI	TGGCCA	1 cut(s)	436
MlyI	GAGTC	2 cut(s)	593, 777
Mox20I	TGGCCA	1 cut(s)	436
MscI	TGGCCA	1 cut(s)	436
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	1 cut(s)	118
Msp20I	TGGCCA	1 cut(s)	436
MspI	CCGG	3 cut(s)	8, 665, 798
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	7 cut(s)	17, 251, 260, 371, 473, 544, 794
NdeI	CATATG	1 cut(s)	611
NdeII	GATC	3 cut(s)	87, 391, 399
NlaIV	GGNNCC	2 cut(s)	62, 111
NmuCI	GTSAC	2 cut(s)	3, 147
PceI	AGGCCT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	179, 627
Pfl23II	CGTACG	1 cut(s)	672
PkrI	GCNGC	4 cut(s)	262, 367, 413, 663
PleI	GAGTC	2 cut(s)	592, 776
PpsI	GAGTC	2 cut(s)	592, 776
Ppu21I	YACGTR	1 cut(s)	676
Psp1406I	AACGTT	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspLI	CGTACG	1 cut(s)	672
PspN4I	GGNNCC	2 cut(s)	62, 111
PstNI	CAGNNNCTG	1 cut(s)	260
RsaI	GTAC	3 cut(s)	68, 208, 674
RsaNI	GTAC	3 cut(s)	67, 207, 673
RseI	CAYNNNNRTG	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	4 cut(s)	261, 366, 412, 662
Sau3AI	GATC	3 cut(s)	87, 391, 399
ScaI	AGTACT	2 cut(s)	68, 208
SchI	GAGTC	2 cut(s)	593, 777
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	381
SfcI	CTRYAG	1 cut(s)	345
SgrAI	CRCCGGYG	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	118
SnaBI	TACGTA	1 cut(s)	676
Sse9I	AATT	2 cut(s)	270, 428
SseBI	AGGCCT	1 cut(s)	300
SsiI	CCGC	2 cut(s)	11, 750
SspMI	CTAG	3 cut(s)	132, 408, 597
StuI	AGGCCT	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	2 cut(s)	214, 623
TaiI	ACGT	4 cut(s)	492, 531, 674, 678
TasI	AATT	2 cut(s)	270, 428
TatI	WGTACW	2 cut(s)	66, 206
TfiI	GAWTC	2 cut(s)	179, 627
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	2 cut(s)	3, 147
TseI	GCWGC	4 cut(s)	260, 365, 411, 661
Tsp45I	GTSAC	2 cut(s)	3, 147
TspDTI	ATGAA	3 cut(s)	61, 441, 619
TspRI	CASTG	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	525
XspI	CTAG	3 cut(s)	132, 408, 597
ZrmI	AGTACT	2 cut(s)	68, 208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.