Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004389

Physical Location & Seq

Genomic Coordinates Forward (+)

54401407 .. 54403840

Gene Structure 2434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG425800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

ATGGCCGTTCCTCCGTCGGAAAGTTCACTCCGGCTGTCGGATTCTATGGCAAATTTCTTCAAAGTTATACTTCCCCCCACCATTGAGAATCAAAAACTAGATATTCCACTAAAGTCTGCACTAGAATTTGGGGATGAACTGTCAAATGTTGCTACACTAATTGTTCCATCTGGTCGTGTTTGGCAAGTGGATTTGGAAAGAGCTCACAAGACCATTTGGTTTGTCGGCGGTTGGCAAAAATTCGCAGAATATTACTCCTTAACTGATGGTCAGTTCTTAGTCTTTAGTTATCAAGGAAATTCGACATTCCATGTTCGCATTTTTGATTTCAGTTGTTGTGAGATCGAGTACCCTTGTGTTGGTCAAAGTATCAAACATGAAGAGGATGTTGAAGATGATGTTTGTGGAACTCTCCCTTCTCCCAGCAAAGGCAAAGGCAAATGTGTAGATCATCATGTTAAGAGGAAGAGGAAAAGTGTTGCTATTGCCAAGAGATTTGAAGAGGATGTAGAAGATGATGTTTATAAAACTCTCCCTTCTTCCAGCAAAGGCAAAGGCAAAGATCAACATGTTAAGAGGAACAGGAAAAGCGTTGCTATTGCCAAGAGATTTAAGCGAGCCAAGTTGAAGGTACAGAGAATGCCTAGCTCACAGGAATTTCCCACAAGAAAGAAGAAATATAAGGAAATATTTGTTAAGAACATAGCTGCTTACACTTATCCTAATTGCAAAATGACGATTGCCAAAGAACAGCAGAAAGTGATCCATGCTACCAAAATGTTCAACTTGGAAAATCCTTTTTTTGCAGTTATCTTGCAGCAATGGAATCTTGACAGCTACTATATGTATGTTCCAACTGCCTTTGGAAGGAGATATATGAGAGGGTGTCCAGAATATATCAAGTTTGAGGATTCTAATTCTAACGAAAAGCAGTGGAATATCCGATGCTTTTTCCCATCAAATACAAAGGTGATGAGGAGAATAGGCAAGGGATGTGGTGAATTTTTCAGAGACAATAATTTCAAGAATGGAGATGTCTGTCTCTTTGAACTGATCAAAAGGAAGGATGTTGTGCTAAAATTTTCGGTATTGCGCAATGCTGAATATGCAGTCAGGGTCGGTGGGAAAAAGAAAAATCCAAAGATTCTTGATTGTGGAACCTTGTACTTCTCTAAGAAGATTAAAGAGTTGGTATTATCCAGAGAAACCAAGAAGGCGATGAAGGCTGCGGGAGCTTTGAAGATTGAAAATCCTGCTTTCATGGTCATCTTGCGAGCGCACAACATGCTCAACTCTTTTGTGCATGTGCCTGCTGAGTTTGTGAAGGATCACCTGCTTGGATGTGCTAACTTCATCAACCTTAAGGCCTCTAGTGACAAGCGGGGCGTGCCCTGCACAGTCTGCACTTATGAGCCACTACACCACAGAATGGAGATACGCGGAGGATTTGGTGAATTTGCTAAGGATAATAATCTGGAGGAAGGAGATGTTTGTGTGTTTGAGCTGATCAAGAGTGAGGCTGATGTGCTCAAAGTTTCAATATTCCATGCCAGTGACTATGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

522

Amino Acids

59.81

Weight (kDa)

9.35

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	19 - 109	1.4e-13	B3 DNA binding domain
B3	PF02362	267 - 366	1.8e-11	B3 DNA binding domain
B3	PF02362	420 - 517	1.6e-09	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17170 AT5G17170
fragaria_vesca	FvH4_7g33550 FvH4_7g33550 FvH4_7g33560 FvH4_7g33560 FvH4_7g33560
malus_domestica	MD01G1233200.v1.1 MD07G1305400.v1.1
prunus_persica	Prupe.2G323500_v2.0.a1
pyrus_communis	pycom01g24150 pycom07g27870
rosa_chinensis	RchiOBHm_Chr1g0383771 RchiOBHm_Chr1g0383811
rosa_laevigata	RLG00000026095 RLG00000026096
rosa_multiflora	Rmu_co8230175.1_g000001 Rmu_sc0012471.1_g000008 Rmu_sc0019101.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277220
rosa_rugosa	Rorug01G0442300 Rorug01G0442300
rosa_samantha	Rh1AG468000 Rh1AG468100 Rh1BG425700 Rh1BG425800 Rh1CG438400 Rh1CG438500 Rh1DG458500 Rh1DG458600
rosa_wichuraiana	Rw1G040430 Rw1G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
AarI	CACCTGC	1 cut(s)	1341
Acc16I	TGCGCA	1 cut(s)	1094
Acc36I	ACCTGC	1 cut(s)	1341
AccB7I	CCANNNNNTGG	1 cut(s)	1429
AccII	CGCG	1 cut(s)	1440
AciI	CCGC	4 cut(s)	228, 1229, 1381, 1440
AclWI	GGATC	2 cut(s)	757, 1335
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	8 cut(s)	52, 125, 239, 298, 656, 1001, 1079, 1454
AfaI	GTAC	3 cut(s)	350, 633, 1166
AfiI	CCNNNNNNNGG	5 cut(s)	37, 359, 428, 867, 1429
AflII	CTTAAG	1 cut(s)	1361
AflIII	ACRYGT	1 cut(s)	568
AluBI	AGCT	6 cut(s)	203, 648, 707, 837, 1235, 1504
AluI	AGCT	6 cut(s)	203, 648, 707, 837, 1235, 1504
Alw21I	GWGCWC	2 cut(s)	205, 1530
Alw26I	GTCTC	2 cut(s)	1005, 1046
AlwI	GGATC	2 cut(s)	757, 1335
AoxI	GGCC	2 cut(s)	3, 1365
ApeKI	GCWGC	3 cut(s)	707, 817, 1226
ApoI	RAATTY	8 cut(s)	52, 125, 239, 298, 656, 1001, 1079, 1454
AspLEI	GCGC	2 cut(s)	1095, 1279
AsuHPI	GGTGA	4 cut(s)	982, 1010, 1322, 1463
BaeGI	GKGCMC	1 cut(s)	1392
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	2 cut(s)	205, 1530
BbvI	GCAGC	3 cut(s)	694, 829, 1213
BccI	CCATC	3 cut(s)	175, 260, 964
BclI	TGATCA	2 cut(s)	1053, 1506
BcoDI	GTCTC	2 cut(s)	1005, 1046
BfaI	CTAG	4 cut(s)	98, 122, 645, 1371
BfrI	CTTAAG	1 cut(s)	1361
BfuAI	ACCTGC	1 cut(s)	1341
BisI	GCNGC	3 cut(s)	708, 818, 1227
BlsI	GCNGC	3 cut(s)	709, 819, 1228
BmiI	GGNNCC	1 cut(s)	1159
BmsI	GCATC	1 cut(s)	935
BpmI	CTGGAG	1 cut(s)	1496
Bpu10I	CCTNAGC	1 cut(s)	1461
BsaBI	GATNNNNATC	1 cut(s)	1470
Bsc4I	CCNNNNNNNGG	5 cut(s)	37, 359, 428, 867, 1429
Bse1I	ACTGG	1 cut(s)	1551
Bse3DI	GCAATG	2 cut(s)	827, 1102
Bse8I	GATNNNNATC	1 cut(s)	1470
BseGI	GGATG	6 cut(s)	139, 391, 511, 998, 1072, 1346
BseJI	GATNNNNATC	1 cut(s)	1470
BseLI	CCNNNNNNNGG	5 cut(s)	37, 359, 428, 867, 1429
BseMI	GCAATG	2 cut(s)	827, 1102
BseMII	CTCAG	1 cut(s)	1305
BseNI	ACTGG	1 cut(s)	1551
BseRI	GAGGAG	1 cut(s)	991
BseSI	GKGCMC	1 cut(s)	1392
BseXI	GCAGC	3 cut(s)	694, 829, 1213
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	3 cut(s)	102, 1378, 1387
Bsh1236I	CGCG	1 cut(s)	1440
BshFI	GGCC	2 cut(s)	5, 1367
BsiHKAI	GWGCWC	2 cut(s)	205, 1530
BsiSI	CCGG	1 cut(s)	31
BslI	CCNNNNNNNGG	5 cut(s)	37, 359, 428, 867, 1429
BsmAI	GTCTC	2 cut(s)	1005, 1046
BsmI	GAATGC	1 cut(s)	645
BsnI	GGCC	2 cut(s)	5, 1367
Bsp1286I	GDGCHC	3 cut(s)	205, 1392, 1530
Bsp143I	GATC	7 cut(s)	342, 448, 562, 762, 1053, 1327, 1506
BspACI	CCGC	4 cut(s)	228, 1229, 1381, 1440
BspANI	GGCC	2 cut(s)	5, 1367
BspCNI	CTCAG	1 cut(s)	1306
BspFNI	CGCG	1 cut(s)	1440
BspLI	GGNNCC	1 cut(s)	1159
BspMI	ACCTGC	1 cut(s)	1341
BspPI	GGATC	2 cut(s)	757, 1335
BspTI	CTTAAG	1 cut(s)	1361
BsrDI	GCAATG	2 cut(s)	827, 1102
BsrI	ACTGG	1 cut(s)	1551
BssMI	GATC	7 cut(s)	342, 448, 562, 762, 1053, 1327, 1506
Bst4CI	ACNGT	2 cut(s)	141, 1399
Bst6I	CTCTTC	3 cut(s)	375, 461, 495
BstAFI	CTTAAG	1 cut(s)	1361
BstAPI	GCANNNNNTGC	2 cut(s)	1285, 1401
BstC8I	GCNNGC	4 cut(s)	618, 1275, 1311, 1388
BstDEI	CTNAG	4 cut(s)	277, 1173, 1314, 1461
BstENI	CCTNNNNNAGG	1 cut(s)	865
BstF5I	GGATG	6 cut(s)	139, 391, 511, 998, 1072, 1346
BstFNI	CGCG	1 cut(s)	1440
BstHHI	GCGC	2 cut(s)	1095, 1279
BstKTI	GATC	7 cut(s)	345, 451, 565, 765, 1056, 1330, 1509
BstMAI	GTCTC	2 cut(s)	1005, 1046
BstMBI	GATC	7 cut(s)	342, 448, 562, 762, 1053, 1327, 1506
BstMWI	GCNNNNNNNGC	7 cut(s)	1106, 1223, 1232, 1285, 1387, 1392, 1401
BstNSI	RCATGY	3 cut(s)	572, 1288, 1307
BstSLI	GKGCMC	1 cut(s)	1392
BstUI	CGCG	1 cut(s)	1440
BstV1I	GCAGC	3 cut(s)	694, 829, 1213
BsuRI	GGCC	2 cut(s)	5, 1367
BtgZI	GCGATG	1 cut(s)	1232
BtsCI	GGATG	6 cut(s)	139, 391, 511, 998, 1072, 1346
BtsI	GCAGTG	1 cut(s)	938
BtsIMutI	CAGTG	2 cut(s)	938, 1558
BveI	ACCTGC	1 cut(s)	1341
Cac8I	GCNNGC	4 cut(s)	618, 1275, 1311, 1388
CfoI	GCGC	2 cut(s)	1095, 1279
Csp6I	GTAC	3 cut(s)	349, 632, 1165
CspCI	CAANNNNNGTGG	2 cut(s)	976, 1011
CviAII	CATG	9 cut(s)	311, 377, 455, 569, 767, 1261, 1285, 1304, 1547
CviQI	GTAC	3 cut(s)	349, 632, 1165
DdeI	CTNAG	4 cut(s)	277, 1173, 1314, 1461
DpnI	GATC	7 cut(s)	344, 450, 564, 764, 1055, 1329, 1508
DpnII	GATC	7 cut(s)	342, 448, 562, 762, 1053, 1327, 1506
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	375, 461, 495
EarI	CTCTTC	3 cut(s)	375, 461, 495
Ecl136II	GAGCTC	1 cut(s)	203
Eco147I	AGGCCT	1 cut(s)	1367
Eco24I	GRGCYC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoNI	CCTNNNNNAGG	1 cut(s)	865
EcoT38I	GRGCYC	1 cut(s)	205
FaeI	CATG	9 cut(s)	314, 380, 458, 572, 770, 1264, 1288, 1307, 1550
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	9 cut(s)	310, 376, 454, 568, 766, 1260, 1284, 1303, 1546
FauI	CCCGC	2 cut(s)	1222, 1374
FbaI	TGATCA	2 cut(s)	1053, 1506
Fnu4HI	GCNGC	3 cut(s)	708, 818, 1227
FokI	GGATG	6 cut(s)	146, 398, 518, 1005, 1079, 1353
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	3 cut(s)	708, 818, 1227
FspBI	CTAG	4 cut(s)	98, 122, 645, 1371
FspI	TGCGCA	1 cut(s)	1094
GlaI	GCGC	2 cut(s)	1094, 1278
GluI	GCNGC	3 cut(s)	708, 818, 1227
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	1496
HaeIII	GGCC	2 cut(s)	5, 1367
HapII	CCGG	1 cut(s)	31
HhaI	GCGC	2 cut(s)	1095, 1279
Hin1II	CATG	9 cut(s)	314, 380, 458, 572, 770, 1264, 1288, 1307, 1550
Hin6I	GCGC	2 cut(s)	1093, 1277
HinP1I	GCGC	2 cut(s)	1093, 1277
HinfI	GANTC	5 cut(s)	41, 88, 826, 911, 1144
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	4 cut(s)	982, 1010, 1322, 1463
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	4 cut(s)	19, 40, 944, 1010
Hpy188III	TCNNGA	7 cut(s)	830, 890, 1024, 1148, 1200, 1475, 1510
Hpy8I	GTNNAC	1 cut(s)	26
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	9 cut(s)	426, 546, 622, 861, 1057, 1207, 1216, 1318, 1475
HpyCH4III	ACNGT	2 cut(s)	141, 1399
HpyCH4V	TGCA	9 cut(s)	119, 729, 806, 817, 1109, 1303, 1395, 1404, 1562
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1106, 1223, 1232, 1285, 1387, 1392, 1401
HpyF3I	CTNAG	4 cut(s)	277, 1173, 1314, 1461
Hsp92II	CATG	9 cut(s)	314, 380, 458, 572, 770, 1264, 1288, 1307, 1550
HspAI	GCGC	2 cut(s)	1093, 1277
Ksp22I	TGATCA	2 cut(s)	1053, 1506
Kzo9I	GATC	7 cut(s)	342, 448, 562, 762, 1053, 1327, 1506
LmnI	GCTCC	1 cut(s)	1232
Lsp1109I	GCAGC	3 cut(s)	694, 829, 1213
LweI	GCATC	1 cut(s)	935
MaeI	CTAG	4 cut(s)	98, 122, 645, 1371
MaeIII	GTNAC	2 cut(s)	1373, 1553
MalI	GATC	7 cut(s)	344, 450, 564, 764, 1055, 1329, 1508
MboI	GATC	7 cut(s)	342, 448, 562, 762, 1053, 1327, 1506
MhlI	GDGCHC	3 cut(s)	205, 1392, 1530
MmeI	TCCRAC	2 cut(s)	18, 878
MseI	TTAA	7 cut(s)	260, 459, 573, 612, 696, 1182, 1362
MslI	CAYNNNNRTG	1 cut(s)	1551
MspCI	CTTAAG	1 cut(s)	1361
MspI	CCGG	1 cut(s)	31
Mva1269I	GAATGC	1 cut(s)	645
MvnI	CGCG	1 cut(s)	1440
MwoI	GCNNNNNNNGC	7 cut(s)	1106, 1223, 1232, 1285, 1387, 1392, 1401
NdeII	GATC	7 cut(s)	342, 448, 562, 762, 1053, 1327, 1506
NlaIII	CATG	9 cut(s)	314, 380, 458, 572, 770, 1264, 1288, 1307, 1550
NlaIV	GGNNCC	1 cut(s)	1159
NmuCI	GTSAC	2 cut(s)	1373, 1553
NsbI	TGCGCA	1 cut(s)	1094
NspI	RCATGY	3 cut(s)	572, 1288, 1307
PaqCI	CACCTGC	1 cut(s)	1341
PceI	AGGCCT	1 cut(s)	1367
PciI	ACATGT	1 cut(s)	568
PctI	GAATGC	1 cut(s)	645
PfeI	GAWTC	5 cut(s)	41, 88, 826, 911, 1144
PflMI	CCANNNNNTGG	1 cut(s)	1429
PkrI	GCNGC	3 cut(s)	709, 819, 1228
PscI	ACATGT	1 cut(s)	568
PsiI	TTATAA	1 cut(s)	525
Psp124BI	GAGCTC	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	422
PspN4I	GGNNCC	1 cut(s)	1159
RsaI	GTAC	3 cut(s)	350, 633, 1166
RsaNI	GTAC	3 cut(s)	349, 632, 1165
RseI	CAYNNNNRTG	1 cut(s)	1551
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	7 cut(s)	260, 459, 573, 612, 696, 1182, 1362
SatI	GCNGC	3 cut(s)	708, 818, 1227
Sau3AI	GATC	7 cut(s)	342, 448, 562, 762, 1053, 1327, 1506
SduI	GDGCHC	3 cut(s)	205, 1392, 1530
SfaNI	GCATC	1 cut(s)	935
SmiMI	CAYNNNNRTG	1 cut(s)	1551
SmlI	CTYRAG	1 cut(s)	1361
SmoI	CTYRAG	1 cut(s)	1361
SseBI	AGGCCT	1 cut(s)	1367
SsiI	CCGC	4 cut(s)	228, 1229, 1381, 1440
SspI	AATATT	3 cut(s)	251, 690, 1542
SspMI	CTAG	4 cut(s)	98, 122, 645, 1371
SstI	GAGCTC	1 cut(s)	205
StuI	AGGCCT	1 cut(s)	1367
TaaI	ACNGT	2 cut(s)	141, 1399
TaqI	TCGA	2 cut(s)	302, 345
TatI	WGTACW	1 cut(s)	1164
TfiI	GAWTC	5 cut(s)	41, 88, 826, 911, 1144
Tru1I	TTAA	7 cut(s)	260, 459, 573, 612, 696, 1182, 1362
Tru9I	TTAA	7 cut(s)	260, 459, 573, 612, 696, 1182, 1362
TscAI	CASTG	2 cut(s)	938, 1558
TseFI	GTSAC	2 cut(s)	1373, 1553
TseI	GCWGC	3 cut(s)	707, 817, 1226
Tsp45I	GTSAC	2 cut(s)	1373, 1553
TspDTI	ATGAA	5 cut(s)	150, 393, 1235, 1249, 1342
TspRI	CASTG	2 cut(s)	938, 1558
Van91I	CCANNNNNTGG	1 cut(s)	1429
Vha464I	CTTAAG	1 cut(s)	1361
XagI	CCTNNNNNAGG	1 cut(s)	865
XapI	RAATTY	8 cut(s)	52, 125, 239, 298, 656, 1001, 1079, 1454
XceI	RCATGY	3 cut(s)	572, 1288, 1307
XspI	CTAG	4 cut(s)	98, 122, 645, 1371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.