Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004389

Physical Location & Seq

Genomic Coordinates Reverse (-)

67705603 .. 67708139

Gene Structure 2537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G040430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGACCGTTCCTCCATCGGAAATTTCACTCCGGCTGTCGGATTCTAAGGCAAATTTCTTCAAAGTTATACTTCCCCCCACCATTGAGAATCAAAAACTAGATATTCCACTAAAGTCTGCACTAGAATTTGGGGATGAACTGTCTAATGTTGCTACACTAATTGTTCCAGCTGGTCGTGTTTGGCAAGTGGATTTGGAAAGAGCTCACAAGACCATTTGGTTTGTCGGCGGTTGGCAAAAATTCGCAGAATATTACTCCTTAACTGATGGTCAGTTCTTAGTCTTTAGTTATCAAGGAAATTCGACATTCCATGTTCGCATTTTTGATTTCAGTTGTTGTGAGATCGAGTACCCTTGTGTTGGTCAAAGTATCAAACATGAAGAGGATGTTGAAGATGATGTTTGTGGAACTCTCCCTTCTCCCAGCAAAGGCAAAGGCAAATGTGTAGATCAACATGTTAAGAGGAAGAGGAAAAGTGTTGCTATTGCCAAGAGATTTGAAGATGATGTTTATAAAACTCTCCCTTCTTCCAGCAAAGGCAAAGGCAAAGATCAACATGTTAAGAGGAACAGGAAAAGCGTTGCTATTGCCAAGAGATTTAAGCGAGCCAAGTTGAAGGTACAGAGAATGCCTAGCTCACAGGAATTTCCCACGAGAAAGAAGAAATATAAGGAAATATTTGTTAAGAACATAGCTGCTTACACTTATCCTAATTGCAAAATGACGATTGCCAAAGAACAGCAGAAAGTGATCCATGCTACCAAAATGTTCAACTTGGAAAATCCTTTTTTTGCAGTTATCTTGCAGCAATGCAATCTTGACAGCTATTATATGTATGTTCCAACTGCCTTTGGAAGGAGATATATGAGAGGGTGTCCAGAATATATCAAGTTTGAGGATTCTAATTCTAACGAAAAGCAGTGGGTTATCCGATGCTTTTTCCCATCAGATACAAAGGTGATGAGGAGAATAGGCAAGGGATGTGGTGAATTTTTCAGAGACAATAATTTCAAGAATGGAGATGTCTGTCTCTTTGAACTGATCAAAAGGAAGGGTGTTGTGCTAAAATTTTCGGTATTGCGCAACGCTGAATATGCAGTCAGGGTCGGTGGGAAAAATAAAAATCCAAAGATTCATGATTTTGGAACCTTGTACTTCTCTAAGAAGATTAAAGAGTTGGTATTATCCAGAGAAACCAAGAAGGCGATGAAGGCTGCGGGAGCTTTGAAGATTGAAAATCCTGCTTTCATGGTCATCTTGCGAGCGCACAACATGCTCAACTCTTTTGTGCATGTGCCTGCTGAGTTTGTGAAGGATCATCTGCTTGGATGTGCCAACTTCATCAACCTTAAGGCCTCTAGTGACAAGCGGGGTGTGCCCTGCACAGTCTGCACTTATGAGCCACTACACCGCAGAATGGAGATACGCGGAGGATTTGGTGAATTTGCTAAGGATAATAATCTGGAGGAAGGAGATGTTTGTGTGTTTGAGCTGATCAAGAGTGAGGCTGATGCGCTCAAAGTTTCAATATTCCATGCCAGTGACTATGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

518

Amino Acids

59.26

Weight (kDa)

9.46

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	19 - 109	2.7e-13	B3 DNA binding domain
B3	PF02362	263 - 362	6e-10	B3 DNA binding domain
B3	PF02362	416 - 513	4.1e-10	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17170 AT5G17170
fragaria_vesca	FvH4_7g33550 FvH4_7g33550 FvH4_7g33560 FvH4_7g33560 FvH4_7g33560
malus_domestica	MD01G1233200.v1.1 MD07G1305400.v1.1
prunus_persica	Prupe.2G323500_v2.0.a1
pyrus_communis	pycom01g24150 pycom07g27870
rosa_chinensis	RchiOBHm_Chr1g0383771 RchiOBHm_Chr1g0383811
rosa_laevigata	RLG00000026095 RLG00000026096
rosa_multiflora	Rmu_co8230175.1_g000001 Rmu_sc0012471.1_g000008 Rmu_sc0019101.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277220
rosa_rugosa	Rorug01G0442300 Rorug01G0442300
rosa_samantha	Rh1AG468000 Rh1AG468100 Rh1BG425700 Rh1BG425800 Rh1CG438400 Rh1CG438500 Rh1DG458500 Rh1DG458600
rosa_wichuraiana	Rw1G040430 Rw1G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
Acc16I	TGCGCA	1 cut(s)	1082
AccII	CGCG	1 cut(s)	1428
AciI	CCGC	5 cut(s)	228, 1217, 1369, 1411, 1428
AclWI	GGATC	2 cut(s)	745, 1323
AcsI	RAATTY	9 cut(s)	21, 52, 125, 239, 298, 644, 989, 1067, 1442
AfaI	GTAC	3 cut(s)	350, 621, 1154
AfiI	CCNNNNNNNGG	5 cut(s)	37, 359, 428, 855, 1417
AflII	CTTAAG	1 cut(s)	1349
AflIII	ACRYGT	2 cut(s)	454, 556
AluBI	AGCT	7 cut(s)	170, 203, 636, 695, 825, 1223, 1492
AluI	AGCT	7 cut(s)	170, 203, 636, 695, 825, 1223, 1492
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	993, 1034
AlwI	GGATC	2 cut(s)	745, 1323
AoxI	GGCC	1 cut(s)	1353
ApeKI	GCWGC	3 cut(s)	695, 805, 1214
ApoI	RAATTY	9 cut(s)	21, 52, 125, 239, 298, 644, 989, 1067, 1442
AspLEI	GCGC	3 cut(s)	1083, 1267, 1516
AsuHPI	GGTGA	3 cut(s)	970, 998, 1451
BaeGI	GKGCMC	1 cut(s)	1380
BaeI	ACNNNNGTAYC	2 cut(s)	942, 975
BanII	GRGCYC	1 cut(s)	205
BauI	CACGAG	1 cut(s)	652
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	3 cut(s)	682, 817, 1201
BccI	CCATC	3 cut(s)	22, 260, 952
BclI	TGATCA	2 cut(s)	1041, 1494
BcoDI	GTCTC	2 cut(s)	993, 1034
BfaI	CTAG	4 cut(s)	98, 122, 633, 1359
BfrI	CTTAAG	1 cut(s)	1349
BisI	GCNGC	3 cut(s)	696, 806, 1215
BlsI	GCNGC	3 cut(s)	697, 807, 1216
BmiI	GGNNCC	1 cut(s)	1147
BmsI	GCATC	2 cut(s)	923, 1501
BpmI	CTGGAG	1 cut(s)	1484
Bpu10I	CCTNAGC	1 cut(s)	1449
BsaBI	GATNNNNATC	1 cut(s)	1458
BsaXI	ACNNNNNCTCC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	5 cut(s)	37, 359, 428, 855, 1417
Bse1I	ACTGG	1 cut(s)	1539
Bse3DI	GCAATG	1 cut(s)	815
Bse8I	GATNNNNATC	1 cut(s)	1458
BseGI	GGATG	4 cut(s)	139, 391, 986, 1334
BseJI	GATNNNNATC	1 cut(s)	1458
BseLI	CCNNNNNNNGG	5 cut(s)	37, 359, 428, 855, 1417
BseMI	GCAATG	1 cut(s)	815
BseMII	CTCAG	1 cut(s)	1293
BseNI	ACTGG	1 cut(s)	1539
BseRI	GAGGAG	1 cut(s)	979
BseSI	GKGCMC	1 cut(s)	1380
BseXI	GCAGC	3 cut(s)	682, 817, 1201
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	3 cut(s)	102, 1366, 1375
Bsh1236I	CGCG	1 cut(s)	1428
BshFI	GGCC	1 cut(s)	1355
BsiHKAI	GWGCWC	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	31
BslI	CCNNNNNNNGG	5 cut(s)	37, 359, 428, 855, 1417
BsmAI	GTCTC	2 cut(s)	993, 1034
BsmI	GAATGC	1 cut(s)	633
BsnI	GGCC	1 cut(s)	1355
Bsp1286I	GDGCHC	2 cut(s)	205, 1380
Bsp143I	GATC	7 cut(s)	342, 448, 550, 750, 1041, 1315, 1494
BspACI	CCGC	5 cut(s)	228, 1217, 1369, 1411, 1428
BspANI	GGCC	1 cut(s)	1355
BspCNI	CTCAG	1 cut(s)	1294
BspFNI	CGCG	1 cut(s)	1428
BspHI	TCATGA	1 cut(s)	1135
BspLI	GGNNCC	1 cut(s)	1147
BspPI	GGATC	2 cut(s)	745, 1323
BspTI	CTTAAG	1 cut(s)	1349
BsrDI	GCAATG	1 cut(s)	815
BsrI	ACTGG	1 cut(s)	1539
BssMI	GATC	7 cut(s)	342, 448, 550, 750, 1041, 1315, 1494
BssSI	CACGAG	1 cut(s)	652
Bst2BI	CACGAG	1 cut(s)	652
Bst4CI	ACNGT	3 cut(s)	7, 141, 1387
Bst6I	CTCTTC	2 cut(s)	375, 461
BstAFI	CTTAAG	1 cut(s)	1349
BstAPI	GCANNNNNTGC	2 cut(s)	1273, 1389
BstC8I	GCNNGC	3 cut(s)	606, 1263, 1299
BstDEI	CTNAG	5 cut(s)	45, 277, 1161, 1302, 1449
BstENI	CCTNNNNNAGG	1 cut(s)	853
BstF5I	GGATG	4 cut(s)	139, 391, 986, 1334
BstFNI	CGCG	1 cut(s)	1428
BstHHI	GCGC	3 cut(s)	1083, 1267, 1516
BstKTI	GATC	7 cut(s)	345, 451, 553, 753, 1044, 1318, 1497
BstMAI	GTCTC	2 cut(s)	993, 1034
BstMBI	GATC	7 cut(s)	342, 448, 550, 750, 1041, 1315, 1494
BstMWI	GCNNNNNNNGC	6 cut(s)	1094, 1211, 1220, 1273, 1375, 1389
BstNSI	RCATGY	4 cut(s)	458, 560, 1276, 1295
BstSLI	GKGCMC	1 cut(s)	1380
BstUI	CGCG	1 cut(s)	1428
BstV1I	GCAGC	3 cut(s)	682, 817, 1201
BsuRI	GGCC	1 cut(s)	1355
BtgZI	GCGATG	1 cut(s)	1220
BtsCI	GGATG	4 cut(s)	139, 391, 986, 1334
BtsI	GCAGTG	1 cut(s)	926
BtsIMutI	CAGTG	2 cut(s)	926, 1546
Cac8I	GCNNGC	3 cut(s)	606, 1263, 1299
CciI	TCATGA	1 cut(s)	1135
CfoI	GCGC	3 cut(s)	1083, 1267, 1516
Csp6I	GTAC	3 cut(s)	349, 620, 1153
CspCI	CAANNNNNGTGG	2 cut(s)	964, 999
CviQI	GTAC	3 cut(s)	349, 620, 1153
DdeI	CTNAG	5 cut(s)	45, 277, 1161, 1302, 1449
DpnI	GATC	7 cut(s)	344, 450, 552, 752, 1043, 1317, 1496
DpnII	GATC	7 cut(s)	342, 448, 550, 750, 1041, 1315, 1494
Eam1104I	CTCTTC	2 cut(s)	375, 461
EarI	CTCTTC	2 cut(s)	375, 461
Ecl136II	GAGCTC	1 cut(s)	203
Eco147I	AGGCCT	1 cut(s)	1355
Eco24I	GRGCYC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoNI	CCTNNNNNAGG	1 cut(s)	853
EcoT38I	GRGCYC	1 cut(s)	205
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FauI	CCCGC	2 cut(s)	1210, 1362
FbaI	TGATCA	2 cut(s)	1041, 1494
Fnu4HI	GCNGC	3 cut(s)	696, 806, 1215
FokI	GGATG	4 cut(s)	146, 398, 993, 1341
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	3 cut(s)	696, 806, 1215
FspBI	CTAG	4 cut(s)	98, 122, 633, 1359
FspI	TGCGCA	1 cut(s)	1082
GlaI	GCGC	3 cut(s)	1082, 1266, 1515
GluI	GCNGC	3 cut(s)	696, 806, 1215
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	1484
HaeIII	GGCC	1 cut(s)	1355
HapII	CCGG	1 cut(s)	31
HhaI	GCGC	3 cut(s)	1083, 1267, 1516
Hin6I	GCGC	3 cut(s)	1081, 1265, 1514
HinP1I	GCGC	3 cut(s)	1081, 1265, 1514
HinfI	GANTC	4 cut(s)	41, 88, 899, 1132
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	3 cut(s)	970, 998, 1451
Hpy188I	TCNGA	5 cut(s)	19, 40, 932, 949, 998
Hpy188III	TCNNGA	7 cut(s)	818, 878, 1012, 1136, 1188, 1463, 1498
HpyAV	CCTTC	9 cut(s)	426, 534, 610, 849, 1045, 1195, 1204, 1306, 1463
HpyCH4III	ACNGT	3 cut(s)	7, 141, 1387
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1094, 1211, 1220, 1273, 1375, 1389
HpyF3I	CTNAG	5 cut(s)	45, 277, 1161, 1302, 1449
HspAI	GCGC	3 cut(s)	1081, 1265, 1514
Ksp22I	TGATCA	2 cut(s)	1041, 1494
Kzo9I	GATC	7 cut(s)	342, 448, 550, 750, 1041, 1315, 1494
LmnI	GCTCC	1 cut(s)	1220
Lsp1109I	GCAGC	3 cut(s)	682, 817, 1201
LweI	GCATC	2 cut(s)	923, 1501
MaeI	CTAG	4 cut(s)	98, 122, 633, 1359
MaeIII	GTNAC	2 cut(s)	1361, 1541
MalI	GATC	7 cut(s)	344, 450, 552, 752, 1043, 1317, 1496
MboI	GATC	7 cut(s)	342, 448, 550, 750, 1041, 1315, 1494
MboII	GAAGA	9 cut(s)	49, 392, 404, 478, 512, 519, 673, 1177, 1240
MhlI	GDGCHC	2 cut(s)	205, 1380
MmeI	TCCRAC	2 cut(s)	18, 866
MseI	TTAA	7 cut(s)	260, 459, 561, 600, 684, 1170, 1350
MslI	CAYNNNNRTG	1 cut(s)	1539
MspA1I	CMGCKG	1 cut(s)	170
MspCI	CTTAAG	1 cut(s)	1349
MspI	CCGG	1 cut(s)	31
Mva1269I	GAATGC	1 cut(s)	633
MvnI	CGCG	1 cut(s)	1428
MwoI	GCNNNNNNNGC	6 cut(s)	1094, 1211, 1220, 1273, 1375, 1389
NdeII	GATC	7 cut(s)	342, 448, 550, 750, 1041, 1315, 1494
NlaIV	GGNNCC	1 cut(s)	1147
NmuCI	GTSAC	2 cut(s)	1361, 1541
NsbI	TGCGCA	1 cut(s)	1082
NspI	RCATGY	4 cut(s)	458, 560, 1276, 1295
PagI	TCATGA	1 cut(s)	1135
PceI	AGGCCT	1 cut(s)	1355
PciI	ACATGT	2 cut(s)	454, 556
PctI	GAATGC	1 cut(s)	633
PfeI	GAWTC	4 cut(s)	41, 88, 899, 1132
PkrI	GCNGC	3 cut(s)	697, 807, 1216
PscI	ACATGT	2 cut(s)	454, 556
PsiI	TTATAA	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	422
PspN4I	GGNNCC	1 cut(s)	1147
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	3 cut(s)	350, 621, 1154
RsaNI	GTAC	3 cut(s)	349, 620, 1153
RseI	CAYNNNNRTG	1 cut(s)	1539
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	7 cut(s)	260, 459, 561, 600, 684, 1170, 1350
SatI	GCNGC	3 cut(s)	696, 806, 1215
Sau3AI	GATC	7 cut(s)	342, 448, 550, 750, 1041, 1315, 1494
SduI	GDGCHC	2 cut(s)	205, 1380
SfaNI	GCATC	2 cut(s)	923, 1501
SmiMI	CAYNNNNRTG	1 cut(s)	1539
SmlI	CTYRAG	1 cut(s)	1349
SmoI	CTYRAG	1 cut(s)	1349
SseBI	AGGCCT	1 cut(s)	1355
SsiI	CCGC	5 cut(s)	228, 1217, 1369, 1411, 1428
SspI	AATATT	3 cut(s)	251, 678, 1530
SspMI	CTAG	4 cut(s)	98, 122, 633, 1359
SstI	GAGCTC	1 cut(s)	205
StuI	AGGCCT	1 cut(s)	1355
TaaI	ACNGT	3 cut(s)	7, 141, 1387
TaqI	TCGA	2 cut(s)	302, 345
TatI	WGTACW	1 cut(s)	1152
TfiI	GAWTC	4 cut(s)	41, 88, 899, 1132
Tru1I	TTAA	7 cut(s)	260, 459, 561, 600, 684, 1170, 1350
Tru9I	TTAA	7 cut(s)	260, 459, 561, 600, 684, 1170, 1350
TscAI	CASTG	2 cut(s)	926, 1546
TseFI	GTSAC	2 cut(s)	1361, 1541
TseI	GCWGC	3 cut(s)	695, 805, 1214
Tsp45I	GTSAC	2 cut(s)	1361, 1541
TspDTI	ATGAA	6 cut(s)	150, 393, 1124, 1223, 1237, 1330
TspRI	CASTG	2 cut(s)	926, 1546
Vha464I	CTTAAG	1 cut(s)	1349
XagI	CCTNNNNNAGG	1 cut(s)	853
XapI	RAATTY	9 cut(s)	21, 52, 125, 239, 298, 644, 989, 1067, 1442
XceI	RCATGY	4 cut(s)	458, 560, 1276, 1295
XspI	CTAG	4 cut(s)	98, 122, 633, 1359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.