Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004389

Physical Location & Seq

Genomic Coordinates Forward (+)

27414422 .. 27416232

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27870.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCACAGGCGGTGCTTGCAGCTGCTTCCTCCTCCTCCTCCTCCTCTTGCTTCCCCACCTTCAACAGGCACCACTCGACAAGAACTCCACAGGTCACTACTCCAAAACAATTGCCACCAATTCAATGCCAGAAATCTAGCTTCCAAGGATTGTCACTTGGAGAAGCCAAACGGGGAGTGCTATATTCTCTGGTAGCAGATTTGAACAATAGGAGTGGTTTAGGCAACAACGTAAGAAGAGGGCTTAGGGTTACAGCAAGAACTGCTGGGGCAGCCAAGTCGATCGAGGCTGAGGTGGACAAGCCTTTAGGCCTCACTTTGGGGCAAAAGCCCGGAGGTCCTGTTACCATCACTGCTGTGGATGGAGGTGGGAATGCAGCAAAGGCAGGGCTCAAGGCAGGGGACCAGGTGATCTACACCAGCAGCTTCTTTGGTGATGAATTATGGCCAGCAGATAAACTAGGGTTTACAAAAACTGCCATCAATGCCAAGCCAGACTCTGTTTACTTTGTTGTTAGCAGAGGTGGTGCTGCTGTCGACGTTAAACGCCTACCAAAGCGTCCGGCTCCACCTCGTTTTGGACGGAAACTAACCGAGGCTCAAAAGGCTAGAGCTACTCACATATGTCTTGACTGTGGATTCATATACACATTACAGAAGCCTTTTGATGAGCAGCCGGATTCGTACACATGCCCTCAATGTCTAGCACCAAAGAAGCGGTTTGCACAATACGATGTCAACACCGGGAAAGCCATTGGCGGCGGTTTGCCTCCGATCGGCGTCATCATTGGCCTAGCGGTTGGTCTTGCCGGCGTCGGAGCTTTGCTTGTATATGGTCTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

29.47

Weight (kDa)

9.78

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17170 AT5G17170
fragaria_vesca	FvH4_7g33550 FvH4_7g33550 FvH4_7g33560 FvH4_7g33560 FvH4_7g33560
malus_domestica	MD01G1233200.v1.1 MD07G1305400.v1.1
prunus_persica	Prupe.2G323500_v2.0.a1
pyrus_communis	pycom01g24150 pycom07g27870
rosa_chinensis	RchiOBHm_Chr1g0383771 RchiOBHm_Chr1g0383811
rosa_laevigata	RLG00000026095 RLG00000026096
rosa_multiflora	Rmu_co8230175.1_g000001 Rmu_sc0012471.1_g000008 Rmu_sc0019101.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277220
rosa_rugosa	Rorug01G0442300 Rorug01G0442300
rosa_samantha	Rh1AG468000 Rh1AG468100 Rh1BG425700 Rh1BG425800 Rh1CG438400 Rh1CG438500 Rh1DG458500 Rh1DG458600
rosa_wichuraiana	Rw1G040430 Rw1G040440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	537
AciI	CCGC	5 cut(s)	11, 718, 759, 762, 797
AcoI	YGGCCR	1 cut(s)	446
AcyI	GRCGYC	2 cut(s)	780, 813
AfaI	GTAC	1 cut(s)	686
AfiI	CCNNNNNNNGG	4 cut(s)	66, 319, 578, 776
AgsI	TTSAA	4 cut(s)	64, 125, 205, 842
AjnI	CCWGG	1 cut(s)	405
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	5 cut(s)	23, 141, 426, 614, 821
AluI	AGCT	5 cut(s)	23, 141, 426, 614, 821
AlwNI	CAGNNNCTG	1 cut(s)	500
AoxI	GGCC	3 cut(s)	310, 446, 790
ApeKI	GCWGC	7 cut(s)	20, 23, 272, 377, 423, 530, 673
AspS9I	GGNCC	2 cut(s)	338, 403
AsuC2I	CCSGG	2 cut(s)	333, 745
AsuHPI	GGTGA	2 cut(s)	421, 446
AvaII	GGWCC	2 cut(s)	338, 403
BalI	TGGCCA	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	393
BarI	GAAGNNNNNNTAC	1 cut(s)	822
BbsI	GAAGAC	1 cut(s)	830
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	7 cut(s)	10, 32, 284, 389, 435, 517, 685
BccI	CCATC	3 cut(s)	356, 356, 488
BcgI	CGANNNNNNTGC	2 cut(s)	261, 295
BciT130I	CCWGG	1 cut(s)	407
BcnI	CCSGG	2 cut(s)	333, 745
BfaI	CTAG	5 cut(s)	138, 461, 609, 704, 794
BisI	GCNGC	8 cut(s)	21, 24, 273, 378, 424, 531, 674, 760
BlsI	GCNGC	8 cut(s)	22, 25, 274, 379, 425, 532, 675, 761
Bme1390I	CCNGG	3 cut(s)	333, 407, 745
Bme18I	GGWCC	2 cut(s)	338, 403
BmgT120I	GGNCC	2 cut(s)	338, 403
BmiI	GGNNCC	3 cut(s)	71, 404, 567
BmrFI	CCNGG	3 cut(s)	333, 407, 745
BpiI	GAAGAC	1 cut(s)	830
Bpu10I	CCTNAGC	2 cut(s)	245, 291
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	2 cut(s)	333, 745
BsaHI	GRCGYC	2 cut(s)	780, 813
BsaJI	CCNNGG	2 cut(s)	145, 594
BsaXI	ACNNNNNCTCC	4 cut(s)	70, 100, 327, 357
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 319, 578, 776
Bse118I	RCCGGY	1 cut(s)	809
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	2 cut(s)	145, 594
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	4 cut(s)	66, 319, 578, 776
BseMII	CTCAG	1 cut(s)	282
BseRI	GAGGAG	5 cut(s)	22, 25, 28, 31, 34
BseXI	GCAGC	7 cut(s)	10, 32, 284, 389, 435, 517, 685
BseYI	CCCAGC	1 cut(s)	266
Bsh1285I	CGRYCG	2 cut(s)	285, 777
BshFI	GGCC	3 cut(s)	312, 448, 792
BshNI	GGYRCC	1 cut(s)	69
BsiEI	CGRYCG	2 cut(s)	285, 777
BsiSI	CCGG	5 cut(s)	333, 563, 677, 744, 810
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	4 cut(s)	66, 319, 578, 776
BsmFI	GGGAC	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	3 cut(s)	312, 448, 792
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	3 cut(s)	282, 411, 774
BspACI	CCGC	5 cut(s)	11, 718, 759, 762, 797
BspANI	GGCC	3 cut(s)	312, 448, 792
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	3 cut(s)	71, 404, 567
BspT107I	GGYRCC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	809
BssAI	RCCGGY	1 cut(s)	809
BssECI	CCNNGG	2 cut(s)	145, 594
BssMI	GATC	3 cut(s)	282, 411, 774
BssNI	GRCGYC	2 cut(s)	780, 813
BssT1I	CCWWGG	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	635
Bst6I	CTCTTC	1 cut(s)	232
BstACI	GRCGYC	2 cut(s)	780, 813
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	3 cut(s)	18, 450, 811
BstDEI	CTNAG	2 cut(s)	245, 291
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	3 cut(s)	285, 414, 777
BstMBI	GATC	3 cut(s)	282, 411, 774
BstMCI	CGRYCG	2 cut(s)	285, 777
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 263, 272, 383, 485, 605
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	693
BstSCI	CCNGG	3 cut(s)	331, 405, 743
BstV1I	GCAGC	7 cut(s)	10, 32, 284, 389, 435, 517, 685
BstV2I	GAAGAC	1 cut(s)	830
BsuRI	GGCC	3 cut(s)	312, 448, 792
BtsCI	GGATG	1 cut(s)	367
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	3 cut(s)	18, 450, 811
CaiI	CAGNNNCTG	1 cut(s)	500
Cfr10I	RCCGGY	1 cut(s)	809
Cfr13I	GGNCC	2 cut(s)	338, 403
CseI	GACGC	3 cut(s)	548, 769, 802
CsiI	ACCWGGT	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	685
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	1 cut(s)	690
CviQI	GTAC	1 cut(s)	685
DdeI	CTNAG	2 cut(s)	245, 291
DpnI	GATC	3 cut(s)	284, 413, 776
DpnII	GATC	3 cut(s)	282, 411, 774
EaeI	YGGCCR	1 cut(s)	446
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	145
Eco147I	AGGCCT	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	393
Eco47I	GGWCC	2 cut(s)	338, 403
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	145
FaeI	CATG	1 cut(s)	693
FaiI	YATR	9 cut(s)	184, 445, 623, 625, 644, 646, 691, 832, 834
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	1 cut(s)	689
FauNDI	CATATG	1 cut(s)	623
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	8 cut(s)	21, 24, 273, 378, 424, 531, 674, 760
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	8 cut(s)	21, 24, 273, 378, 424, 531, 674, 760
FspBI	CTAG	5 cut(s)	138, 461, 609, 704, 794
GluI	GCNGC	8 cut(s)	21, 24, 273, 378, 424, 531, 674, 760
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	3 cut(s)	312, 448, 792
HapII	CCGG	5 cut(s)	333, 563, 677, 744, 810
HgaI	GACGC	3 cut(s)	548, 769, 802
Hin1I	GRCGYC	2 cut(s)	780, 813
Hin1II	CATG	1 cut(s)	693
HincII	GTYRAC	2 cut(s)	538, 739
HindII	GTYRAC	2 cut(s)	538, 739
HinfI	GANTC	3 cut(s)	497, 639, 680
HpaII	CCGG	5 cut(s)	333, 563, 677, 744, 810
HphI	GGTGA	2 cut(s)	421, 446
Hpy166II	GTNNAC	6 cut(s)	298, 468, 505, 538, 687, 739
Hpy188I	TCNGA	2 cut(s)	774, 818
Hpy188III	TCNNGA	1 cut(s)	629
Hpy8I	GTNNAC	6 cut(s)	298, 468, 505, 538, 687, 739
Hpy99I	CGWCG	2 cut(s)	542, 818
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	635
HpyCH4IV	ACGT	2 cut(s)	231, 540
HpyCH4V	TGCA	3 cut(s)	20, 377, 725
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 263, 272, 383, 485, 605
HpyF3I	CTNAG	2 cut(s)	245, 291
HpySE526I	ACGT	2 cut(s)	231, 540
Hsp92I	GRCGYC	2 cut(s)	780, 813
Hsp92II	CATG	1 cut(s)	693
KroI	GCCGGC	1 cut(s)	809
KroNI	GCCGGC	1 cut(s)	811
Kzo9I	GATC	3 cut(s)	282, 411, 774
LmnI	GCTCC	2 cut(s)	571, 818
Lsp1109I	GCAGC	7 cut(s)	10, 32, 284, 389, 435, 517, 685
MabI	ACCWGGT	1 cut(s)	405
MaeI	CTAG	5 cut(s)	138, 461, 609, 704, 794
MaeII	ACGT	2 cut(s)	231, 540
MaeIII	GTNAC	5 cut(s)	3, 94, 153, 250, 343
MalI	GATC	3 cut(s)	284, 413, 776
MboI	GATC	3 cut(s)	282, 411, 774
MboII	GAAGA	2 cut(s)	249, 830
MfeI	CAATTG	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	393
MlsI	TGGCCA	1 cut(s)	448
MluCI	AATT	3 cut(s)	110, 120, 440
MluNI	TGGCCA	1 cut(s)	448
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	1 cut(s)	796
Mox20I	TGGCCA	1 cut(s)	448
MroNI	GCCGGC	1 cut(s)	809
MscI	TGGCCA	1 cut(s)	448
MseI	TTAA	1 cut(s)	543
MslI	CAYNNNNRTG	1 cut(s)	356
Msp20I	TGGCCA	1 cut(s)	448
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	5 cut(s)	333, 563, 677, 744, 810
MspR9I	CCNGG	3 cut(s)	333, 407, 745
MunI	CAATTG	1 cut(s)	110
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	6 cut(s)	17, 263, 272, 383, 485, 605
NaeI	GCCGGC	1 cut(s)	811
NciI	CCSGG	2 cut(s)	333, 745
NdeI	CATATG	1 cut(s)	623
NdeII	GATC	3 cut(s)	282, 411, 774
NgoMIV	GCCGGC	1 cut(s)	809
NlaIII	CATG	1 cut(s)	693
NlaIV	GGNNCC	3 cut(s)	71, 404, 567
NmuCI	GTSAC	3 cut(s)	3, 94, 153
NspI	RCATGY	1 cut(s)	693
OliI	CACNNNNGTG	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	312
PctI	GAATGC	1 cut(s)	379
PdiI	GCCGGC	1 cut(s)	811
PfeI	GAWTC	2 cut(s)	639, 680
PkrI	GCNGC	8 cut(s)	22, 25, 274, 379, 425, 532, 675, 761
Ple19I	CGATCG	2 cut(s)	285, 777
PleI	GAGTC	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	491
PpuMI	RGGWCCY	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	405
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	3 cut(s)	71, 404, 567
PspPI	GGNCC	2 cut(s)	338, 403
PspPPI	RGGWCCY	1 cut(s)	338
PstNI	CAGNNNCTG	1 cut(s)	500
PvuI	CGATCG	2 cut(s)	285, 777
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	686
RsaNI	GTAC	1 cut(s)	685
RseI	CAYNNNNRTG	1 cut(s)	356
SalI	GTCGAC	1 cut(s)	536
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	8 cut(s)	21, 24, 273, 378, 424, 531, 674, 760
Sau3AI	GATC	3 cut(s)	282, 411, 774
Sau96I	GGNCC	2 cut(s)	338, 403
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	3 cut(s)	333, 407, 745
SduI	GDGCHC	1 cut(s)	393
SexAI	ACCWGGT	1 cut(s)	405
SinI	GGWCC	2 cut(s)	338, 403
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	3 cut(s)	110, 120, 440
SseBI	AGGCCT	1 cut(s)	312
SsiI	CCGC	5 cut(s)	11, 718, 759, 762, 797
SspMI	CTAG	5 cut(s)	138, 461, 609, 704, 794
StuI	AGGCCT	1 cut(s)	312
StyD4I	CCNGG	3 cut(s)	331, 405, 743
StyI	CCWWGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	635
TaiI	ACGT	2 cut(s)	234, 543
TaqI	TCGA	4 cut(s)	77, 281, 285, 537
TasI	AATT	3 cut(s)	110, 120, 440
TauI	GCSGC	1 cut(s)	762
TfiI	GAWTC	2 cut(s)	639, 680
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	3 cut(s)	3, 94, 153
TseI	GCWGC	7 cut(s)	20, 23, 272, 377, 423, 530, 673
Tsp45I	GTSAC	3 cut(s)	3, 94, 153
TspDTI	ATGAA	2 cut(s)	453, 631
TspGWI	ACGGA	1 cut(s)	598
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	338, 403
XagI	CCTNNNNNAGG	1 cut(s)	64
XceI	RCATGY	1 cut(s)	693
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	5 cut(s)	138, 461, 609, 704, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.