AT3G03270

Universal stress protein A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013275
Physical Location & Seq
Reverse (-)
761004 .. 763369
2366 bp
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UTR
Exon/CDS
Intron
AT3G03270.2

Sequence Viewer

Length: 606 bp
ATGGGAAAGGCACGTACGGTGGGAGTGGGAATGGACTATTCTCCGACGAGCAAATTAGCTCTCCGGTGGGCGGCGGAGAATCTCCTTGAAGACGGCGACACCGTCATCTTGATTCACGTCCAACCACAAAACGCCGATCATACCCGCAAAATCCTCTTCGAGGAAACCGGTTCACCGCTAATTCCTTTGGAGGAATTTAGAGAGGTTAATTTGTCTAAACAGTATGGACTTGCTTACGATCCTGAGGTTCTTGATGTTCTTGATACTCTCTCTAGGGCTAAAAAGGTGAAGGTTGTAGCAAAGGTGTATTGGGGAGATCCAAGGGAGAAACTTTGTGATGCTGTCGAAAATCTAAAACTCGATTCCATTGTTCTTGGCAGTCGAGGTTTGGGTTCTCTCAAAAGGCCGAATCATAATGGATTCATGATCATTATGTTTGATCATAGCCTAGTTGGACTTGTATCCCTAGATCATGATCAAAGTGGGCTTATAAACATGGCCGAGATGGGTAGTTCTAAATCAATTTGTTGGATCAGAAGAAATCAAGAAAGAGACAGTCGTTGGAGCTTTTCTGATCTGCTTTTGGATGATCACCCATTAGATTGA

Protein Analysis

201

Amino Acids

22.6

Weight (kDa)

5.53

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 5 - 157 1.3e-34 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03270 AT3G03270
malus_domestica MD09G1276200.v1.1 MD17G1270300.v1.1
prunus_persica Prupe.3G016200_v2.0.a1
pyrus_communis pycom09g18630 pycom17g26880
rosa_chinensis RchiOBHm_Chr3g0490231
rosa_laevigata RLG00000022893
rosa_multiflora Rmu_sc0008723.1_g000005
rosa_roxburghii Rroxscaffold_6G00393670
rosa_rugosa Rorug03G0243300 Rorug03G0243300
rosa_samantha Rh3AG291600 Rh3BG328800 Rh3CG325600 Rh3DG324900
rosa_wichuraiana Rw3G025810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 491
AciI CCGC 4 cut(s) 71, 74, 145, 176
AclWI GGATC 3 cut(s) 233, 311, 539
AcoI YGGCCR 1 cut(s) 498
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 2 cut(s) 70, 160
AgeI ACCGGT 1 cut(s) 167
AgsI TTSAA 1 cut(s) 89
AjiI CACGTC 1 cut(s) 118
AluBI AGCT 2 cut(s) 59, 567
AluI AGCT 2 cut(s) 59, 567
Alw26I GTCTC 1 cut(s) 546
AlwI GGATC 3 cut(s) 233, 311, 539
AoxI GGCC 2 cut(s) 404, 498
ApoI RAATTY 1 cut(s) 194
AsiGI ACCGGT 1 cut(s) 167
AsuHPI GGTGA 3 cut(s) 165, 298, 584
AxyI CCTNAGG 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 96
BccI CCATC 1 cut(s) 499
BceAI ACGGC 1 cut(s) 109
BciVI GTATCC 1 cut(s) 472
BclI TGATCA 4 cut(s) 426, 439, 475, 589
BcoDI GTCTC 1 cut(s) 546
BfaI CTAG 3 cut(s) 273, 449, 467
BfuI GTATCC 1 cut(s) 472
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmgBI CACGTC 1 cut(s) 118
BmsI GCATC 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 320
BsaWI WCCGGW 2 cut(s) 63, 167
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 160
Bse118I RCCGGY 1 cut(s) 167
Bse21I CCTNAGG 1 cut(s) 243
Bse8I GATNNNNATC 1 cut(s) 474
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 1 cut(s) 592
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 70, 160
BseMII CTCAG 1 cut(s) 234
BshFI GGCC 2 cut(s) 406, 500
BshTI ACCGGT 1 cut(s) 167
BsiSI CCGG 2 cut(s) 64, 168
BsiWI CGTACG 1 cut(s) 14
BslI CCNNNNNNNGG 2 cut(s) 70, 160
BsmAI GTCTC 1 cut(s) 546
BsnI GGCC 2 cut(s) 406, 500
BspACI CCGC 4 cut(s) 71, 74, 145, 176
BspANI GGCC 2 cut(s) 406, 500
BspCNI CTCAG 1 cut(s) 235
BspHI TCATGA 2 cut(s) 423, 472
BspPI GGATC 3 cut(s) 233, 311, 539
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 320
Bst4CI ACNGT 4 cut(s) 19, 103, 222, 557
Bst6I CTCTTC 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 243
BstENI CCTNNNNNAGG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 592
BstMAI GTCTC 1 cut(s) 546
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
Bsu36I CCTNAGG 1 cut(s) 243
BsuI GTATCC 1 cut(s) 472
BsuRI GGCC 2 cut(s) 406, 500
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 1 cut(s) 592
CciI TCATGA 2 cut(s) 423, 472
Cfr10I RCCGGY 1 cut(s) 167
Csp6I GTAC 1 cut(s) 15
CspAI ACCGGT 1 cut(s) 167
CviAII CATG 3 cut(s) 424, 473, 496
CviJI RGCY 7 cut(s) 59, 278, 406, 447, 487, 500, 567
CviKI_1 RGCY 7 cut(s) 59, 278, 406, 447, 487, 500, 567
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 1 cut(s) 243
EaeI YGGCCR 1 cut(s) 498
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
EciI GGCGGA 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 320
Eco81I CCTNAGG 1 cut(s) 243
EcoNI CCTNNNNNAGG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 3 cut(s) 427, 476, 499
FaiI YATR 9 cut(s) 141, 225, 414, 425, 434, 444, 474, 491, 497
FatI CATG 3 cut(s) 423, 472, 495
FauI CCCGC 1 cut(s) 152
FbaI TGATCA 4 cut(s) 426, 439, 475, 589
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 599
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 3 cut(s) 273, 449, 467
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 2 cut(s) 406, 500
HapII CCGG 2 cut(s) 64, 168
Hin1II CATG 3 cut(s) 427, 476, 499
HinfI GANTC 5 cut(s) 79, 112, 362, 409, 420
HpaII CCGG 2 cut(s) 64, 168
HphI GGTGA 3 cut(s) 165, 298, 584
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 3 cut(s) 45, 536, 574
Hpy188III TCNNGA 7 cut(s) 109, 242, 251, 260, 424, 473, 545
Hpy8I GTNNAC 1 cut(s) 173
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 4 cut(s) 19, 103, 222, 557
HpyCH4IV ACGT 2 cut(s) 13, 117
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 2 cut(s) 13, 117
Hsp92II CATG 3 cut(s) 427, 476, 499
Ksp22I TGATCA 4 cut(s) 426, 439, 475, 589
LmnI GCTCC 1 cut(s) 564
LpnPI CCDG 3 cut(s) 77, 181, 255
LweI GCATC 1 cut(s) 328
MaeI CTAG 3 cut(s) 273, 449, 467
MaeII ACGT 2 cut(s) 13, 117
MboII GAAGA 3 cut(s) 101, 148, 549
MflI RGATCY 1 cut(s) 316
MluCI AATT 5 cut(s) 53, 180, 194, 208, 522
MmeI TCCRAC 5 cut(s) 68, 145, 433, 509, 542
MnlI CCTC 6 cut(s) 154, 164, 184, 196, 238, 377
MseI TTAA 1 cut(s) 207
MspI CCGG 2 cut(s) 64, 168
NlaIII CATG 3 cut(s) 427, 476, 499
NmeAIII GCCGAG 1 cut(s) 526
PagI TCATGA 2 cut(s) 423, 472
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 5 cut(s) 79, 112, 362, 409, 420
Pfl23II CGTACG 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 101
PinAI ACCGGT 1 cut(s) 167
PkrI GCNGC 1 cut(s) 73
Ppu21I YACGTR 1 cut(s) 14
PsiI TTATAA 1 cut(s) 491
PspLI CGTACG 1 cut(s) 14
PsuI RGATCY 1 cut(s) 316
PsyI GACNNNGTC 1 cut(s) 101
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 1 cut(s) 72
SfaNI GCATC 1 cut(s) 328
Sse9I AATT 5 cut(s) 53, 180, 194, 208, 522
SsiI CCGC 4 cut(s) 71, 74, 145, 176
SspMI CTAG 3 cut(s) 273, 449, 467
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 4 cut(s) 19, 103, 222, 557
TaiI ACGT 2 cut(s) 16, 120
TaqI TCGA 4 cut(s) 159, 345, 360, 382
TasI AATT 5 cut(s) 53, 180, 194, 208, 522
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 5 cut(s) 79, 112, 362, 409, 420
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 412
Tth111I GACNNNGTC 1 cut(s) 101
XagI CCTNNNNNAGG 1 cut(s) 158
XapI RAATTY 1 cut(s) 194
XspI CTAG 3 cut(s) 273, 449, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.