Rroxscaffold_6G00393670

Universal stress protein A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013275
Physical Location & Seq
Forward (+)
13806326 .. 13807602
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393670.1

Sequence Viewer

Length: 570 bp
ATGGGAAAGGCACGGACTGTTGGTATAGGCATGGATTACTCTGCAGCGAGCAAATCTGCTTTACGATGGACGGTCGATAATCTGATTGAAGAAGGAGATCGCATCATATTGATCCATGTTGAACAACCCAAAGCTACCAGAAAGCAGCTATTCGAAGATACGGGATCACCTTTGATTCCTTTGGAAGAATTTAATGACTCAAAGCAGTATGGACTCACTAATGACCCAGAGGTTCTCGATATCCTAGATACTGTGTCAAGAACTAAAGGGGCCAAAGTTGCGGCGAAGGTATACTGGGGGGATCCAAGAGAGAAGCTGTGTGATGCAGTGCAAGATCTCAAGCTTAATTCACTTGTTGTTGGAAGCAGGGGATTAGGCCTTCTAAAAAGGTATATTGAATCCCTTCCTTTGGTTCGGTCAATATATACTAGAAATAATACACACCCGATTGAATTGGATATAAATCTAAGGGTGTTGCTTGGCAGTGTGAGTAACTATGTGGTGACTAATGCTTCATGTCCAGTCACAGTCGTGAAGGGTGCATCATCGACTTCATCTTCCAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

189

Amino Acids

20.7

Weight (kDa)

8.49

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 5 - 132 8.7e-14 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03270 AT3G03270
malus_domestica MD09G1276200.v1.1 MD17G1270300.v1.1
prunus_persica Prupe.3G016200_v2.0.a1
pyrus_communis pycom09g18630 pycom17g26880
rosa_chinensis RchiOBHm_Chr3g0490231
rosa_laevigata RLG00000022893
rosa_multiflora Rmu_sc0008723.1_g000005
rosa_roxburghii Rroxscaffold_6G00393670
rosa_rugosa Rorug03G0243300 Rorug03G0243300
rosa_samantha Rh3AG291600 Rh3BG328800 Rh3CG325600 Rh3DG324900
rosa_wichuraiana Rw3G025810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 291
AciI CCGC 1 cut(s) 281
AclWI GGATC 4 cut(s) 106, 172, 296, 309
AcsI RAATTY 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 409
AgsI TTSAA 4 cut(s) 89, 122, 398, 452
AleI CACNNNNGTG 1 cut(s) 530
AluBI AGCT 4 cut(s) 134, 148, 316, 343
AluI AGCT 4 cut(s) 134, 148, 316, 343
AlwI GGATC 4 cut(s) 106, 172, 296, 309
AoxI GGCC 2 cut(s) 270, 376
ApeKI GCWGC 2 cut(s) 44, 145
ApoI RAATTY 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 402
AspS9I GGNCC 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 159, 514
AsuII TTCGAA 1 cut(s) 153
BamHI GGATCC 1 cut(s) 301
BbvI GCAGC 2 cut(s) 56, 157
BccI CCATC 1 cut(s) 60
BfaI CTAG 2 cut(s) 245, 429
BfmI CTRYAG 1 cut(s) 42
BglII AGATCT 1 cut(s) 334
BisI GCNGC 3 cut(s) 45, 146, 282
BlsI GCNGC 3 cut(s) 46, 147, 283
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 2 cut(s) 271, 303
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 3 cut(s) 111, 313, 551
BmuI ACTGGG 1 cut(s) 304
Bpu14I TTCGAA 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 323
BsaBI GATNNNNATC 1 cut(s) 462
Bsc4I CCNNNNNNNGG 1 cut(s) 409
Bse1I ACTGG 2 cut(s) 299, 521
Bse8I GATNNNNATC 1 cut(s) 462
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 1 cut(s) 409
BseNI ACTGG 2 cut(s) 299, 521
BseXI GCAGC 2 cut(s) 56, 157
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 272, 378
BsiEI CGRYCG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 409
BsnI GGCC 2 cut(s) 272, 378
Bsp119I TTCGAA 1 cut(s) 153
Bsp143I GATC 5 cut(s) 97, 111, 164, 301, 334
BspACI CCGC 1 cut(s) 281
BspANI GGCC 2 cut(s) 272, 378
BspLI GGNNCC 2 cut(s) 271, 303
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 4 cut(s) 106, 172, 296, 309
BspT104I TTCGAA 1 cut(s) 153
BsrI ACTGG 2 cut(s) 299, 521
BssMI GATC 5 cut(s) 97, 111, 164, 301, 334
BssNAI GTATAC 1 cut(s) 292
Bst1107I GTATAC 1 cut(s) 292
Bst4CI ACNGT 4 cut(s) 19, 73, 253, 529
BstBI TTCGAA 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 467
BstKTI GATC 5 cut(s) 100, 114, 167, 304, 337
BstMBI GATC 5 cut(s) 97, 111, 164, 301, 334
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 56, 157
BstX2I RGATCY 2 cut(s) 301, 334
BstYI RGATCY 2 cut(s) 301, 334
BstZ17I GTATAC 1 cut(s) 292
BsuRI GGCC 2 cut(s) 272, 378
BtsI GCAGTG 2 cut(s) 333, 490
BtsIMutI CAGTG 2 cut(s) 333, 490
Cac8I GCNNGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 270
CviAII CATG 3 cut(s) 31, 116, 516
CviJI RGCY 6 cut(s) 134, 148, 272, 316, 343, 378
CviKI_1 RGCY 6 cut(s) 134, 148, 272, 316, 343, 378
DdeI CTNAG 1 cut(s) 467
DpnI GATC 5 cut(s) 99, 113, 166, 303, 336
DpnII GATC 5 cut(s) 97, 111, 164, 301, 334
Eco147I AGGCCT 1 cut(s) 378
Eco32I GATATC 1 cut(s) 241
EcoRV GATATC 1 cut(s) 241
FaeI CATG 3 cut(s) 34, 119, 519
FatI CATG 3 cut(s) 30, 115, 515
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 45, 146, 282
Fsp4HI GCNGC 3 cut(s) 45, 146, 282
FspBI CTAG 2 cut(s) 245, 429
GluI GCNGC 3 cut(s) 45, 146, 282
HaeIII GGCC 2 cut(s) 272, 378
Hin1II CATG 3 cut(s) 34, 119, 519
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 4 cut(s) 175, 197, 213, 398
HphI GGTGA 2 cut(s) 159, 514
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 3 cut(s) 236, 258, 532
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 5 cut(s) 86, 280, 389, 413, 529
HpyCH4III ACNGT 4 cut(s) 19, 73, 253, 529
HpyCH4V TGCA 4 cut(s) 44, 326, 331, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 1 cut(s) 467
Hsp92II CATG 3 cut(s) 34, 119, 519
Kzo9I GATC 5 cut(s) 97, 111, 164, 301, 334
LpnPI CCDG 5 cut(s) 151, 240, 280, 352, 534
Lsp1109I GCAGC 2 cut(s) 56, 157
LweI GCATC 3 cut(s) 111, 313, 551
MaeI CTAG 2 cut(s) 245, 429
MaeIII GTNAC 3 cut(s) 491, 502, 523
MalI GATC 5 cut(s) 99, 113, 166, 303, 336
MboI GATC 5 cut(s) 97, 111, 164, 301, 334
MboII GAAGA 4 cut(s) 101, 167, 197, 549
MflI RGATCY 2 cut(s) 301, 334
MluCI AATT 3 cut(s) 188, 346, 452
MlyI GAGTC 2 cut(s) 191, 207
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 402
MseI TTAA 2 cut(s) 192, 345
MslI CAYNNNNRTG 1 cut(s) 530
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 5 cut(s) 97, 111, 164, 301, 334
NlaIII CATG 3 cut(s) 34, 119, 519
NlaIV GGNNCC 2 cut(s) 271, 303
NmuCI GTSAC 2 cut(s) 502, 523
NspV TTCGAA 1 cut(s) 153
OliI CACNNNNGTG 1 cut(s) 530
PceI AGGCCT 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 175, 398
PkrI GCNGC 3 cut(s) 46, 147, 283
PleI GAGTC 2 cut(s) 191, 207
PpsI GAGTC 2 cut(s) 191, 207
PspN4I GGNNCC 2 cut(s) 271, 303
PspPI GGNCC 1 cut(s) 270
PstI CTGCAG 1 cut(s) 46
PsuI RGATCY 2 cut(s) 301, 334
RseI CAYNNNNRTG 1 cut(s) 530
SaqAI TTAA 2 cut(s) 192, 345
SatI GCNGC 3 cut(s) 45, 146, 282
Sau3AI GATC 5 cut(s) 97, 111, 164, 301, 334
Sau96I GGNCC 1 cut(s) 270
SchI GAGTC 2 cut(s) 191, 207
SetI ASST 8 cut(s) 136, 150, 172, 234, 291, 318, 345, 392
SfaNI GCATC 3 cut(s) 111, 313, 551
SfcI CTRYAG 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 530
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 3 cut(s) 188, 346, 452
SseBI AGGCCT 1 cut(s) 378
SsiI CCGC 1 cut(s) 281
SspMI CTAG 2 cut(s) 245, 429
StuI AGGCCT 1 cut(s) 378
TaaI ACNGT 4 cut(s) 19, 73, 253, 529
TaqI TCGA 4 cut(s) 75, 153, 237, 548
TaqII GACCGA 1 cut(s) 405
TasI AATT 3 cut(s) 188, 346, 452
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 2 cut(s) 175, 398
Tru1I TTAA 2 cut(s) 192, 345
Tru9I TTAA 2 cut(s) 192, 345
TscAI CASTG 2 cut(s) 333, 490
TseFI GTSAC 2 cut(s) 502, 523
TseI GCWGC 2 cut(s) 44, 145
Tsp45I GTSAC 2 cut(s) 502, 523
TspDTI ATGAA 2 cut(s) 504, 543
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 2 cut(s) 333, 490
XapI RAATTY 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 2 cut(s) 245, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.