MD09G1276200.v1.1

Universal stress protein A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0013275
Physical Location & Seq
Forward (+)
35353155 .. 35354594
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1276200.v1.1.491

Sequence Viewer

Length: 498 bp
ATGGGGAAGGAACGCAGTGTAGGAATAGGCATGGATTATTCAGCAACAAGCAAATTGGCCCTAAGATGGGCAGTCGATAATCTCATCGAAGAAGGAGATCGCATCGTATTAATCCACGTTGAGTCACCCAAAGCTGCAACAAGCAGGAAGCAGCTGTTTGAGAACTCTGGATCACCTTTGATTCCTTTGGAAGAACTTGTACTGGAGACTAACGTCTCAAAGCAGTATGGACTTACTAATGATCCAGAGGTGCTTGATATTCTTGATAAAGTTTCAAGAAGTAAAGGGGCCAAGGTTGTGGCCAAGGTGTACTGGGGAGATGCAGGGGAGAAGTTGTGTGATGCTGTGCTAGATCTCAAGCTTGATTCGCTTGTTGTTGGAAGCAGGGGATTAGGCCTTATCAAAAGGGTGCTGCTGGGCAGTGTTAGCAACTACGTGGTGACCAATGCTTCATGTCCAGTTACAGTTGTCAAGGGGGTGCAATCATCCAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

166

Amino Acids

17.72

Weight (kDa)

7.71

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 6 - 158 9.2e-29 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03270 AT3G03270
malus_domestica MD09G1276200.v1.1 MD17G1270300.v1.1
prunus_persica Prupe.3G016200_v2.0.a1
pyrus_communis pycom09g18630 pycom17g26880
rosa_chinensis RchiOBHm_Chr3g0490231
rosa_laevigata RLG00000022893
rosa_multiflora Rmu_sc0008723.1_g000005
rosa_roxburghii Rroxscaffold_6G00393670
rosa_rugosa Rorug03G0243300 Rorug03G0243300
rosa_samantha Rh3AG291600 Rh3BG328800 Rh3CG325600 Rh3DG324900
rosa_wichuraiana Rw3G025810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 178, 236
AcoI YGGCCR 1 cut(s) 300
AfaI GTAC 2 cut(s) 201, 311
AfiI CCNNNNNNNGG 2 cut(s) 66, 67
AgsI TTSAA 1 cut(s) 276
AluBI AGCT 3 cut(s) 134, 154, 361
AluI AGCT 3 cut(s) 134, 154, 361
Alw26I GTCTC 2 cut(s) 200, 220
AlwI GGATC 2 cut(s) 178, 236
AoxI GGCC 4 cut(s) 57, 288, 300, 394
ApeKI GCWGC 3 cut(s) 134, 151, 412
AseI ATTAAT 1 cut(s) 110
AspS9I GGNCC 2 cut(s) 58, 288
AsuHPI GGTGA 3 cut(s) 117, 165, 451
BalI TGGCCA 1 cut(s) 302
BarI GAAGNNNNNNTAC 2 cut(s) 183, 215
BbvI GCAGC 3 cut(s) 121, 163, 399
BccI CCATC 1 cut(s) 60
BcoDI GTCTC 2 cut(s) 200, 220
BfaI CTAG 1 cut(s) 350
BglII AGATCT 1 cut(s) 352
BisI GCNGC 3 cut(s) 135, 152, 413
BlsI GCNGC 3 cut(s) 136, 153, 414
BmgT120I GGNCC 2 cut(s) 58, 288
BmiI GGNNCC 1 cut(s) 289
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 111, 310, 331
BmuI ACTGGG 1 cut(s) 322
BoxI GACNNNNGTC 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 341
BsaAI YACGTR 1 cut(s) 436
BsaJI CCNNGG 2 cut(s) 291, 303
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 67
Bse1I ACTGG 3 cut(s) 207, 317, 458
BseDI CCNNGG 2 cut(s) 291, 303
BseGI GGATG 1 cut(s) 485
BseLI CCNNNNNNNGG 2 cut(s) 66, 67
BseNI ACTGG 3 cut(s) 207, 317, 458
BseXI GCAGC 3 cut(s) 121, 163, 399
BseYI CCCAGC 1 cut(s) 415
BshFI GGCC 4 cut(s) 59, 290, 302, 396
BslI CCNNNNNNNGG 2 cut(s) 66, 67
BsmAI GTCTC 2 cut(s) 200, 220
BsmBI CGTCTC 1 cut(s) 220
BsnI GGCC 4 cut(s) 59, 290, 302, 396
Bsp143I GATC 4 cut(s) 97, 170, 241, 352
BspANI GGCC 4 cut(s) 59, 290, 302, 396
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 2 cut(s) 178, 236
BsrI ACTGG 3 cut(s) 207, 317, 458
BssECI CCNNGG 2 cut(s) 291, 303
BssMI GATC 4 cut(s) 97, 170, 241, 352
BssT1I CCWWGG 2 cut(s) 291, 303
Bst4CI ACNGT 1 cut(s) 466
BstBAI YACGTR 1 cut(s) 436
BstDEI CTNAG 1 cut(s) 62
BstEII GGTNACC 1 cut(s) 439
BstF5I GGATG 1 cut(s) 485
BstKTI GATC 4 cut(s) 100, 173, 244, 355
BstMAI GTCTC 2 cut(s) 200, 220
BstMBI GATC 4 cut(s) 97, 170, 241, 352
BstMWI GCNNNNNNNGC 2 cut(s) 367, 426
BstPAI GACNNNNGTC 1 cut(s) 212
BstPI GGTNACC 1 cut(s) 439
BstV1I GCAGC 3 cut(s) 121, 163, 399
BstX2I RGATCY 1 cut(s) 352
BstXI CCANNNNNNTGG 1 cut(s) 298
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 4 cut(s) 59, 290, 302, 396
BtsCI GGATG 1 cut(s) 485
BtsI GCAGTG 2 cut(s) 22, 427
BtsIMutI CAGTG 2 cut(s) 22, 427
Cfr13I GGNCC 2 cut(s) 58, 288
Csp6I GTAC 2 cut(s) 200, 310
CviAII CATG 2 cut(s) 31, 453
CviJI RGCY 7 cut(s) 59, 134, 154, 290, 302, 361, 396
CviKI_1 RGCY 7 cut(s) 59, 134, 154, 290, 302, 361, 396
CviQI GTAC 2 cut(s) 200, 310
DdeI CTNAG 1 cut(s) 62
DpnI GATC 4 cut(s) 99, 172, 243, 354
DpnII GATC 4 cut(s) 97, 170, 241, 352
EaeI YGGCCR 1 cut(s) 300
Eco130I CCWWGG 2 cut(s) 291, 303
Eco147I AGGCCT 1 cut(s) 396
Eco91I GGTNACC 1 cut(s) 439
EcoO65I GGTNACC 1 cut(s) 439
EcoT14I CCWWGG 2 cut(s) 291, 303
ErhI CCWWGG 2 cut(s) 291, 303
Esp3I CGTCTC 1 cut(s) 220
FaeI CATG 2 cut(s) 34, 456
FaiI YATR 4 cut(s) 32, 228, 454, 496
FatI CATG 2 cut(s) 30, 452
Fnu4HI GCNGC 3 cut(s) 135, 152, 413
FokI GGATG 1 cut(s) 472
Fsp4HI GCNGC 3 cut(s) 135, 152, 413
FspBI CTAG 1 cut(s) 350
GluI GCNGC 3 cut(s) 135, 152, 413
GsaI CCCAGC 1 cut(s) 419
GsuI CTGGAG 1 cut(s) 224
HaeIII GGCC 4 cut(s) 59, 290, 302, 396
Hin1II CATG 2 cut(s) 34, 456
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 3 cut(s) 122, 181, 365
HphI GGTGA 3 cut(s) 117, 165, 451
Hpy166II GTNNAC 1 cut(s) 310
Hpy188III TCNNGA 4 cut(s) 168, 245, 263, 276
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4IV ACGT 3 cut(s) 117, 213, 435
HpyCH4V TGCA 3 cut(s) 137, 323, 481
HpyF10VI GCNNNNNNNGC 2 cut(s) 367, 426
HpyF3I CTNAG 1 cut(s) 62
HpySE526I ACGT 3 cut(s) 117, 213, 435
Hsp92II CATG 2 cut(s) 34, 456
Kzo9I GATC 4 cut(s) 97, 170, 241, 352
LpnPI CCDG 9 cut(s) 130, 153, 188, 258, 298, 309, 370, 401, 471
Lsp1109I GCAGC 3 cut(s) 121, 163, 399
LweI GCATC 3 cut(s) 111, 310, 331
MaeI CTAG 1 cut(s) 350
MaeII ACGT 3 cut(s) 117, 213, 435
MaeIII GTNAC 3 cut(s) 123, 439, 460
MalI GATC 4 cut(s) 99, 172, 243, 354
MboI GATC 4 cut(s) 97, 170, 241, 352
MboII GAAGA 2 cut(s) 101, 203
MflI RGATCY 1 cut(s) 352
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 1 cut(s) 53
MluNI TGGCCA 1 cut(s) 302
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 1 cut(s) 241
Mox20I TGGCCA 1 cut(s) 302
MscI TGGCCA 1 cut(s) 302
MseI TTAA 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 154
MwoI GCNNNNNNNGC 2 cut(s) 367, 426
NdeII GATC 4 cut(s) 97, 170, 241, 352
NlaIII CATG 2 cut(s) 34, 456
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 2 cut(s) 123, 439
PceI AGGCCT 1 cut(s) 396
PfeI GAWTC 2 cut(s) 181, 365
PkrI GCNGC 3 cut(s) 136, 153, 414
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 436
PshAI GACNNNNGTC 1 cut(s) 212
PshBI ATTAAT 1 cut(s) 110
PspEI GGTNACC 1 cut(s) 439
PspFI CCCAGC 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 2 cut(s) 58, 288
PsuI RGATCY 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 2 cut(s) 201, 311
RsaNI GTAC 2 cut(s) 200, 310
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 3 cut(s) 135, 152, 413
Sau3AI GATC 4 cut(s) 97, 170, 241, 352
Sau96I GGNCC 2 cut(s) 58, 288
SchI GAGTC 1 cut(s) 131
SfaNI GCATC 3 cut(s) 111, 310, 331
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 1 cut(s) 53
SseBI AGGCCT 1 cut(s) 396
SspMI CTAG 1 cut(s) 350
StuI AGGCCT 1 cut(s) 396
StyI CCWWGG 2 cut(s) 291, 303
TaaI ACNGT 1 cut(s) 466
TaiI ACGT 3 cut(s) 120, 216, 438
TaqI TCGA 2 cut(s) 75, 87
TasI AATT 1 cut(s) 53
TatI WGTACW 2 cut(s) 199, 309
TfiI GAWTC 2 cut(s) 181, 365
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 2 cut(s) 22, 427
TseFI GTSAC 2 cut(s) 123, 439
TseI GCWGC 3 cut(s) 134, 151, 412
Tsp45I GTSAC 2 cut(s) 123, 439
TspDTI ATGAA 1 cut(s) 441
TspRI CASTG 2 cut(s) 22, 427
VspI ATTAAT 1 cut(s) 110
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.