Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013275

Physical Location & Seq

Genomic Coordinates Reverse (-)

1164437 .. 1165948

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G016200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGGAAGGCACGTAGTGTTGGCATAGGCATGGATTATTCTGCAACAAGCAAATCGGCCCTACGATGGGCAGTCGATAATCTGATAGAAGAAGGAGATCGCATCATATTAATCCATGTTGAGCCTCCCAAAGCTACCAATACCAGAAAGCAGCTGTTCGAGGACACTGGATCACCTTTGATTCCTCTGGAAGAATTTGTAGAGAGTAATGTCTCAAAGCAGTATGGACTTACCAGCGATCCGGAAGTTCTTGATATTCTTGATACAGTTTCAAGAACTAAAAGGGCTAAGGTTGTGGCCAAGGTTTACTGGGGTGATCCAAGGGAGAAGTTGTGTGATGCTGTGCAAGATCTCAAGCTGGATTCGCTTGTTGTTGGAAGCAGGGGCTTAGGCCTCCACTACTACAAAAAAGCAAAAAGACGACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

143

Amino Acids

15.92

Weight (kDa)

9.18

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03270 AT3G03270
malus_domestica	MD09G1276200.v1.1 MD17G1270300.v1.1
prunus_persica	Prupe.3G016200_v2.0.a1
pyrus_communis	pycom09g18630 pycom17g26880
rosa_chinensis	RchiOBHm_Chr3g0490231
rosa_laevigata	RLG00000022893
rosa_multiflora	Rmu_sc0008723.1_g000005
rosa_roxburghii	Rroxscaffold_6G00393670
rosa_rugosa	Rorug03G0243300 Rorug03G0243300
rosa_samantha	Rh3AG291600 Rh3BG328800 Rh3CG325600 Rh3DG324900
rosa_wichuraiana	Rw3G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	241
AclWI	GGATC	3 cut(s)	178, 233, 311
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	194
AdeI	CACNNNGTG	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	66, 67
AgsI	TTSAA	1 cut(s)	273
AluBI	AGCT	3 cut(s)	134, 154, 358
AluI	AGCT	3 cut(s)	134, 154, 358
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	3 cut(s)	178, 233, 311
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	3 cut(s)	57, 297, 391
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	194
AseI	ATTAAT	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	165, 326
BalI	TGGCCA	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	217
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	58
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	2 cut(s)	111, 328
BmuI	ACTGGG	1 cut(s)	319
Bpu10I	CCTNAGC	2 cut(s)	288, 388
BpuEI	CTTGAG	1 cut(s)	338
BsaAI	YACGTR	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	300, 320
BsaWI	WCCGGW	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 67
Bse1I	ACTGG	2 cut(s)	172, 314
BseAI	TCCGGA	1 cut(s)	241
BseDI	CCNNGG	2 cut(s)	300, 320
BseLI	CCNNNNNNNGG	2 cut(s)	66, 67
BseNI	ACTGG	2 cut(s)	172, 314
BseXI	GCAGC	1 cut(s)	163
BshFI	GGCC	3 cut(s)	59, 299, 393
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	66, 67
BsmAI	GTCTC	1 cut(s)	217
BsnI	GGCC	3 cut(s)	59, 299, 393
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	5 cut(s)	97, 170, 238, 316, 349
BspANI	GGCC	3 cut(s)	59, 299, 393
BspEI	TCCGGA	1 cut(s)	241
BspPI	GGATC	3 cut(s)	178, 233, 311
BsrI	ACTGG	2 cut(s)	172, 314
BssECI	CCNNGG	2 cut(s)	300, 320
BssMI	GATC	5 cut(s)	97, 170, 238, 316, 349
BssT1I	CCWWGG	2 cut(s)	300, 320
Bst4CI	ACNGT	2 cut(s)	268, 426
BstBAI	YACGTR	1 cut(s)	14
BstDEI	CTNAG	2 cut(s)	288, 388
BstKTI	GATC	5 cut(s)	100, 173, 241, 319, 352
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	5 cut(s)	97, 170, 238, 316, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	3 cut(s)	59, 299, 393
BtsIMutI	CAGTG	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	58
CviAII	CATG	2 cut(s)	31, 116
CviJI	RGCY	9 cut(s)	59, 124, 134, 154, 287, 299, 358, 387, 393
CviKI_1	RGCY	9 cut(s)	59, 124, 134, 154, 287, 299, 358, 387, 393
DdeI	CTNAG	2 cut(s)	288, 388
DpnI	GATC	5 cut(s)	99, 172, 240, 318, 351
DpnII	GATC	5 cut(s)	97, 170, 238, 316, 349
DraIII	CACNNNGTG	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	297
Eco130I	CCWWGG	2 cut(s)	300, 320
Eco147I	AGGCCT	1 cut(s)	393
EcoT14I	CCWWGG	2 cut(s)	300, 320
ErhI	CCWWGG	2 cut(s)	300, 320
FaeI	CATG	2 cut(s)	34, 119
FaiI	YATR	5 cut(s)	26, 32, 107, 117, 225
FatI	CATG	2 cut(s)	30, 115
Fnu4HI	GCNGC	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	152
HaeIII	GGCC	3 cut(s)	59, 299, 393
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	2 cut(s)	34, 119
HinfI	GANTC	2 cut(s)	181, 362
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	2 cut(s)	165, 326
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	5 cut(s)	188, 242, 251, 260, 273
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	426
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	2 cut(s)	268, 426
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	2 cut(s)	44, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	2 cut(s)	288, 388
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	2 cut(s)	34, 119
Kpn2I	TCCGGA	1 cut(s)	241
Kzo9I	GATC	5 cut(s)	97, 170, 238, 316, 349
LpnPI	CCDG	8 cut(s)	153, 157, 173, 247, 255, 295, 344, 367
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	2 cut(s)	111, 328
MaeII	ACGT	1 cut(s)	13
MalI	GATC	5 cut(s)	99, 172, 240, 318, 351
MboI	GATC	5 cut(s)	97, 170, 238, 316, 349
MboII	GAAGA	2 cut(s)	101, 203
MflI	RGATCY	1 cut(s)	349
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	1 cut(s)	194
MluNI	TGGCCA	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	4 cut(s)	135, 154, 195, 404
Mox20I	TGGCCA	1 cut(s)	299
MroI	TCCGGA	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	29
Msp20I	TGGCCA	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	364
NdeII	GATC	5 cut(s)	97, 170, 238, 316, 349
NlaIII	CATG	2 cut(s)	34, 119
PceI	AGGCCT	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	181, 362
PkrI	GCNGC	1 cut(s)	153
Ppu21I	YACGTR	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	110
PspPI	GGNCC	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	5 cut(s)	97, 170, 238, 316, 349
Sau96I	GGNCC	1 cut(s)	58
SetI	ASST	7 cut(s)	16, 136, 156, 178, 294, 306, 360
SfaNI	GCATC	2 cut(s)	111, 328
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	1 cut(s)	194
SseBI	AGGCCT	1 cut(s)	393
StuI	AGGCCT	1 cut(s)	393
StyI	CCWWGG	2 cut(s)	300, 320
TaaI	ACNGT	2 cut(s)	268, 426
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	2 cut(s)	75, 159
TasI	AATT	1 cut(s)	194
TfiI	GAWTC	2 cut(s)	181, 362
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	1 cut(s)	151
TspRI	CASTG	1 cut(s)	172
VspI	ATTAAT	1 cut(s)	110
XapI	RAATTY	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.