RLG00000022893

Universal stress protein A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0013275
Physical Location & Seq
Forward (+)
14242012 .. 14243188
1177 bp
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UTR
Exon/CDS
Intron
RLM00000022893

Sequence Viewer

Length: 489 bp
ATGGGAAAGGCACGGACTGTTGGTATAGGCATGGATTACTCTGCAACGAGCAAATCTGCTTTACGATGGACGGTCGATAATCTGATTGAAGAAGGAGATCTCATCATATTGATCCATGTTGAACAGCCCAAAGCTACCAGAAAGCAGCTATTCGAAGATACGGGATCACCTTTGATTCCTCTGGAAGAGTTTAATGCCTCAAAGCAGTACGGACTCGCTGATGACCCAGAGGTTCTCGATATGCTTAATACTGTGTCAAGAACCAAAGGGGCCAAAGTTGCGGCGAAGGTATACTGGGGGGATCCAAGAGAGAAGCTGTGTGATGCAGTGCAAGATCTCAAGCTTAATTCGCTTGTTGTTGGAAGCAGGGGATTACGCCTTCTAAAAAGGGTGTTGCTTGGCAGTGTGAGTAACTATGTGGTGACTAATGCTTCATGTCCAGTCACAGTCGTGAAGGGTGCGTTATCGACTTCTTCTTCCAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

163

Amino Acids

17.53

Weight (kDa)

8.87

Isoelectric Point (pI)

30.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 5 - 152 1.3e-26 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03270 AT3G03270
malus_domestica MD09G1276200.v1.1 MD17G1270300.v1.1
prunus_persica Prupe.3G016200_v2.0.a1
pyrus_communis pycom09g18630 pycom17g26880
rosa_chinensis RchiOBHm_Chr3g0490231
rosa_laevigata RLG00000022893
rosa_multiflora Rmu_sc0008723.1_g000005
rosa_roxburghii Rroxscaffold_6G00393670
rosa_rugosa Rorug03G0243300 Rorug03G0243300
rosa_samantha Rh3AG291600 Rh3BG328800 Rh3CG325600 Rh3DG324900
rosa_wichuraiana Rw3G025810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 291
AciI CCGC 1 cut(s) 281
AclWI GGATC 4 cut(s) 106, 172, 296, 309
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 2 cut(s) 89, 122
AleI CACNNNNGTG 1 cut(s) 449
AluBI AGCT 4 cut(s) 134, 148, 316, 343
AluI AGCT 4 cut(s) 134, 148, 316, 343
AlwI GGATC 4 cut(s) 106, 172, 296, 309
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 159, 433
AsuII TTCGAA 1 cut(s) 153
BamHI GGATCC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 157
BccI CCATC 1 cut(s) 60
BglII AGATCT 2 cut(s) 97, 334
BisI GCNGC 2 cut(s) 146, 282
BlsI GCNGC 2 cut(s) 147, 283
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 2 cut(s) 271, 303
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 304
Bpu14I TTCGAA 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 323
Bse1I ACTGG 2 cut(s) 299, 440
BseNI ACTGG 2 cut(s) 299, 440
BseXI GCAGC 1 cut(s) 157
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 272
BsiEI CGRYCG 1 cut(s) 75
BsnI GGCC 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 153
Bsp143I GATC 5 cut(s) 97, 111, 164, 301, 334
BspACI CCGC 1 cut(s) 281
BspANI GGCC 1 cut(s) 272
BspLI GGNNCC 2 cut(s) 271, 303
BspPI GGATC 4 cut(s) 106, 172, 296, 309
BspT104I TTCGAA 1 cut(s) 153
BsrI ACTGG 2 cut(s) 299, 440
BssMI GATC 5 cut(s) 97, 111, 164, 301, 334
BssNAI GTATAC 1 cut(s) 292
Bst1107I GTATAC 1 cut(s) 292
Bst4CI ACNGT 4 cut(s) 19, 73, 253, 448
Bst6I CTCTTC 1 cut(s) 180
BstBI TTCGAA 1 cut(s) 153
BstKTI GATC 5 cut(s) 100, 114, 167, 304, 337
BstMBI GATC 5 cut(s) 97, 111, 164, 301, 334
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 2 cut(s) 278, 349
BstV1I GCAGC 1 cut(s) 157
BstX2I RGATCY 3 cut(s) 97, 301, 334
BstYI RGATCY 3 cut(s) 97, 301, 334
BstZ17I GTATAC 1 cut(s) 292
BsuRI GGCC 1 cut(s) 272
BtsI GCAGTG 2 cut(s) 333, 409
BtsIMutI CAGTG 2 cut(s) 333, 409
Cfr13I GGNCC 1 cut(s) 270
Csp6I GTAC 1 cut(s) 208
CviAII CATG 3 cut(s) 31, 116, 435
CviJI RGCY 6 cut(s) 127, 134, 148, 272, 316, 343
CviKI_1 RGCY 6 cut(s) 127, 134, 148, 272, 316, 343
CviQI GTAC 1 cut(s) 208
DpnI GATC 5 cut(s) 99, 113, 166, 303, 336
DpnII GATC 5 cut(s) 97, 111, 164, 301, 334
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
FaeI CATG 3 cut(s) 34, 119, 438
FaiI YATR 9 cut(s) 26, 32, 107, 117, 242, 292, 417, 436, 487
FatI CATG 3 cut(s) 30, 115, 434
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 146, 282
Fsp4HI GCNGC 2 cut(s) 146, 282
GluI GCNGC 2 cut(s) 146, 282
HaeIII GGCC 1 cut(s) 272
Hin1II CATG 3 cut(s) 34, 119, 438
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 2 cut(s) 175, 213
HphI GGTGA 2 cut(s) 159, 433
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 4 cut(s) 182, 236, 258, 451
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 4 cut(s) 86, 280, 389, 448
HpyCH4III ACNGT 4 cut(s) 19, 73, 253, 448
HpyCH4V TGCA 3 cut(s) 44, 326, 331
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 349
Hsp92II CATG 3 cut(s) 34, 119, 438
Kzo9I GATC 5 cut(s) 97, 111, 164, 301, 334
LpnPI CCDG 6 cut(s) 151, 167, 240, 280, 352, 453
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 1 cut(s) 313
MaeIII GTNAC 3 cut(s) 410, 421, 442
MalI GATC 5 cut(s) 99, 113, 166, 303, 336
MboI GATC 5 cut(s) 97, 111, 164, 301, 334
MboII GAAGA 5 cut(s) 101, 167, 197, 465, 468
MflI RGATCY 3 cut(s) 97, 301, 334
MluCI AATT 1 cut(s) 346
MlyI GAGTC 1 cut(s) 207
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 3 cut(s) 189, 208, 223
MseI TTAA 3 cut(s) 192, 246, 345
MslI CAYNNNNRTG 1 cut(s) 449
MwoI GCNNNNNNNGC 2 cut(s) 278, 349
NdeII GATC 5 cut(s) 97, 111, 164, 301, 334
NlaIII CATG 3 cut(s) 34, 119, 438
NlaIV GGNNCC 2 cut(s) 271, 303
NmuCI GTSAC 2 cut(s) 421, 442
NspV TTCGAA 1 cut(s) 153
OliI CACNNNNGTG 1 cut(s) 449
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 2 cut(s) 147, 283
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 271, 303
PspPI GGNCC 1 cut(s) 270
PsuI RGATCY 3 cut(s) 97, 301, 334
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 3 cut(s) 192, 246, 345
SatI GCNGC 2 cut(s) 146, 282
Sau3AI GATC 5 cut(s) 97, 111, 164, 301, 334
Sau96I GGNCC 1 cut(s) 270
SchI GAGTC 1 cut(s) 207
SetI ASST 7 cut(s) 136, 150, 172, 234, 291, 318, 345
SfaNI GCATC 1 cut(s) 313
SfuI TTCGAA 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 1 cut(s) 346
SsiI CCGC 1 cut(s) 281
TaaI ACNGT 4 cut(s) 19, 73, 253, 448
TaqI TCGA 4 cut(s) 75, 153, 237, 467
TasI AATT 1 cut(s) 346
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 3 cut(s) 192, 246, 345
Tru9I TTAA 3 cut(s) 192, 246, 345
TscAI CASTG 2 cut(s) 333, 409
TseFI GTSAC 2 cut(s) 421, 442
TseI GCWGC 1 cut(s) 145
Tsp45I GTSAC 2 cut(s) 421, 442
TspDTI ATGAA 1 cut(s) 423
TspGWI ACGGA 2 cut(s) 28, 225
TspRI CASTG 2 cut(s) 333, 409
XmiI GTMKAC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.