MD17G1270300.v1.1

Universal stress protein A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0013275
Physical Location & Seq
Forward (+)
33140335 .. 33141747
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1270300.v1.1.491

Sequence Viewer

Length: 528 bp
ATGGGGAAGGCTCGCAGTGTAGGAGTTGGAATGGATTATTCAGCAACAAGCAAATTAGCCCTAAGATGGGCAGTCGATAATCTCATCGAACAAGGAGATCGCATCGTATTAATCCACGTTGAGCCAACCAAAGCAGCTACTACAAGCAGGAAACAGCTGTTTGAGAACACTGGATCACCTTTGATTCCTCTAGAAGAACTTGTGGAGACTAATGTCTCAAAGCACTATGGACTTACTAATGATCCAGAGGTGCTTGATATTCTTGACAAAGTGTCAAAAACTAAAGGGGCTGAGGCTGTGGCAAAGGTGTACTGGGGGGATCCAAGAGAGAAGTTGTGTGATGCAGTGCAAGATCTTAAGCTTGATTCGCTTGTCGTCGGAAGCAGGGGCTTAGGCCCTATCAAAAGGGTGTTGCTGGGCAGTGTAAGCATCTATGTGGTGACAAATGCTTCATGTCCGGTTACTGTTGTCAAGGGCGCACACAATCATCCAAACCATAAAATCTCAAAGAAACTATCTTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

176

Amino Acids

19.0

Weight (kDa)

9.19

Isoelectric Point (pI)

25.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 5 - 158 3.4e-28 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03270 AT3G03270
malus_domestica MD09G1276200.v1.1 MD17G1270300.v1.1
prunus_persica Prupe.3G016200_v2.0.a1
pyrus_communis pycom09g18630 pycom17g26880
rosa_chinensis RchiOBHm_Chr3g0490231
rosa_laevigata RLG00000022893
rosa_multiflora Rmu_sc0008723.1_g000005
rosa_roxburghii Rroxscaffold_6G00393670
rosa_rugosa Rorug03G0243300 Rorug03G0243300
rosa_samantha Rh3AG291600 Rh3BG328800 Rh3CG325600 Rh3DG324900
rosa_wichuraiana Rw3G025810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 181, 236, 314, 327
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 2 cut(s) 66, 67
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 1 cut(s) 523
AhdI GACNNNNNGTC 1 cut(s) 271
AluBI AGCT 3 cut(s) 137, 157, 361
AluI AGCT 3 cut(s) 137, 157, 361
Alw26I GTCTC 2 cut(s) 200, 220
AlwI GGATC 4 cut(s) 181, 236, 314, 327
AoxI GGCC 1 cut(s) 394
ApeKI GCWGC 1 cut(s) 134
AseI ATTAAT 1 cut(s) 110
AspLEI GCGC 1 cut(s) 479
AspS9I GGNCC 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 168, 451
BamHI GGATCC 1 cut(s) 319
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 60
BcoDI GTCTC 2 cut(s) 200, 220
BfaI CTAG 1 cut(s) 191
BfrI CTTAAG 1 cut(s) 356
BglII AGATCT 1 cut(s) 352
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BmeRI GACNNNNNGTC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 1 cut(s) 321
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 111, 331, 438
BmuI ACTGGG 1 cut(s) 322
BoxI GACNNNNGTC 1 cut(s) 212
Bpu10I CCTNAGC 2 cut(s) 291, 391
BsaWI WCCGGW 1 cut(s) 457
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 67
Bse1I ACTGG 2 cut(s) 175, 317
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 2 cut(s) 66, 67
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 2 cut(s) 175, 317
BseXI GCAGC 1 cut(s) 146
BseYI CCCAGC 1 cut(s) 415
BshFI GGCC 1 cut(s) 396
BsiSI CCGG 1 cut(s) 458
BslI CCNNNNNNNGG 2 cut(s) 66, 67
BsmAI GTCTC 2 cut(s) 200, 220
BsnI GGCC 1 cut(s) 396
Bsp143I GATC 5 cut(s) 97, 173, 241, 319, 352
BspANI GGCC 1 cut(s) 396
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 4 cut(s) 181, 236, 314, 327
BspTI CTTAAG 1 cut(s) 356
BsrI ACTGG 2 cut(s) 175, 317
BssMI GATC 5 cut(s) 97, 173, 241, 319, 352
Bst4CI ACNGT 1 cut(s) 466
BstAFI CTTAAG 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 3 cut(s) 62, 291, 391
BstF5I GGATG 1 cut(s) 487
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 5 cut(s) 100, 176, 244, 322, 355
BstMAI GTCTC 2 cut(s) 200, 220
BstMBI GATC 5 cut(s) 97, 173, 241, 319, 352
BstMWI GCNNNNNNNGC 2 cut(s) 367, 426
BstPAI GACNNNNGTC 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 146
BstX2I RGATCY 2 cut(s) 319, 352
BstYI RGATCY 2 cut(s) 319, 352
BsuRI GGCC 1 cut(s) 396
BtsCI GGATG 1 cut(s) 487
BtsI GCAGTG 3 cut(s) 22, 351, 427
BtsIMutI CAGTG 4 cut(s) 22, 168, 351, 427
Cac8I GCNNGC 1 cut(s) 13
CfoI GCGC 1 cut(s) 479
Cfr13I GGNCC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 310
CviAII CATG 1 cut(s) 453
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 3 cut(s) 62, 291, 391
DpnI GATC 5 cut(s) 99, 175, 243, 321, 354
DpnII GATC 5 cut(s) 97, 173, 241, 319, 352
DriI GACNNNNNGTC 1 cut(s) 271
Eam1105I GACNNNNNGTC 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 395
FaeI CATG 1 cut(s) 456
FaiI YATR 4 cut(s) 228, 435, 454, 498
FatI CATG 1 cut(s) 452
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 474
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 478
GluI GCNGC 1 cut(s) 135
GsaI CCCAGC 1 cut(s) 419
HaeIII GGCC 1 cut(s) 396
HapII CCGG 1 cut(s) 458
HhaI GCGC 1 cut(s) 479
Hin1II CATG 1 cut(s) 456
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 2 cut(s) 184, 365
HpaII CCGG 1 cut(s) 458
HphI GGTGA 2 cut(s) 168, 451
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 380
Hpy188III TCNNGA 3 cut(s) 191, 245, 263
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 1 cut(s) 380
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 344, 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 367, 426
HpyF3I CTNAG 3 cut(s) 62, 291, 391
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 1 cut(s) 456
HspAI GCGC 1 cut(s) 477
Kzo9I GATC 5 cut(s) 97, 173, 241, 319, 352
LpnPI CCDG 7 cut(s) 133, 156, 258, 298, 370, 401, 471
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 3 cut(s) 111, 331, 438
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 439, 460
MalI GATC 5 cut(s) 99, 175, 243, 321, 354
MboI GATC 5 cut(s) 97, 173, 241, 319, 352
MboII GAAGA 1 cut(s) 206
MflI RGATCY 2 cut(s) 319, 352
MluCI AATT 1 cut(s) 53
MmeI TCCRAC 2 cut(s) 7, 358
MnlI CCTC 3 cut(s) 198, 241, 286
MseI TTAA 2 cut(s) 110, 357
MslI CAYNNNNRTG 1 cut(s) 434
MspA1I CMGCKG 1 cut(s) 157
MspCI CTTAAG 1 cut(s) 356
MspI CCGG 1 cut(s) 458
MwoI GCNNNNNNNGC 2 cut(s) 367, 426
NdeII GATC 5 cut(s) 97, 173, 241, 319, 352
NlaIII CATG 1 cut(s) 456
NlaIV GGNNCC 1 cut(s) 321
NmuCI GTSAC 1 cut(s) 439
PfeI GAWTC 2 cut(s) 184, 365
PkrI GCNGC 1 cut(s) 136
PshAI GACNNNNGTC 1 cut(s) 212
PshBI ATTAAT 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 395
PsuI RGATCY 2 cut(s) 319, 352
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 2 cut(s) 110, 357
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 5 cut(s) 97, 173, 241, 319, 352
Sau96I GGNCC 1 cut(s) 395
SetI ASST 7 cut(s) 120, 139, 159, 181, 252, 309, 363
SfaNI GCATC 3 cut(s) 111, 331, 438
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 1 cut(s) 53
SspMI CTAG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 466
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 75, 87
TasI AATT 1 cut(s) 53
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 2 cut(s) 184, 365
Tru1I TTAA 2 cut(s) 110, 357
Tru9I TTAA 2 cut(s) 110, 357
TscAI CASTG 4 cut(s) 22, 175, 351, 427
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 1 cut(s) 441
TspRI CASTG 4 cut(s) 22, 175, 351, 427
Vha464I CTTAAG 1 cut(s) 356
VspI ATTAAT 1 cut(s) 110
XbaI TCTAGA 1 cut(s) 190
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.