Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008723.1

Orthogroup ID

OG0013275

Physical Location & Seq

Genomic Coordinates Forward (+)

27065 .. 27979

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008723.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgggaaaggcacggactgttggtataggcatggattactctgcagcgagcaaatctgctttacgatggactgtcgataatctgattgaagaaggagatcgcatcatattgatccatgttcaacaacccaaagctagcacaaagcagctattcgaagatacgggatcacctttgattcctttggaagaatttaatgactcaaagcagtatggactcactaatgacccagaggttctcgatatcctagatactgtgtcaagaactaaaggggccaaagttgcggcgaaggtatactggggggatccaagagagaagctgtgtgatgcagtgcaagatctcaagcttaattcgcttgttgttggaagcagggggttaggccttctaaaaagggtgttgcttggcagtgtgagtaactatgtggtgactaatgcttcatgtccagtcacagtcgtgaagggtgcatcatcgacttcatcttccaaaccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

162

Amino Acids

17.41

Weight (kDa)

8.51

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03270 AT3G03270
malus_domestica	MD09G1276200.v1.1 MD17G1270300.v1.1
prunus_persica	Prupe.3G016200_v2.0.a1
pyrus_communis	pycom09g18630 pycom17g26880
rosa_chinensis	RchiOBHm_Chr3g0490231
rosa_laevigata	RLG00000022893
rosa_multiflora	Rmu_sc0008723.1_g000005
rosa_roxburghii	Rroxscaffold_6G00393670
rosa_rugosa	Rorug03G0243300 Rorug03G0243300
rosa_samantha	Rh3AG291600 Rh3BG328800 Rh3CG325600 Rh3DG324900
rosa_wichuraiana	Rw3G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	291
AciI	CCGC	1 cut(s)	281
AclWI	GGATC	4 cut(s)	106, 172, 296, 309
AcsI	RAATTY	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	89, 122
AleI	CACNNNNGTG	1 cut(s)	449
AluBI	AGCT	4 cut(s)	134, 148, 316, 343
AluI	AGCT	4 cut(s)	134, 148, 316, 343
AlwI	GGATC	4 cut(s)	106, 172, 296, 309
AoxI	GGCC	2 cut(s)	270, 376
ApeKI	GCWGC	2 cut(s)	44, 145
ApoI	RAATTY	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	2 cut(s)	159, 433
AsuII	TTCGAA	1 cut(s)	153
AsuNHI	GCTAGC	1 cut(s)	134
BamHI	GGATCC	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	56, 157
BccI	CCATC	1 cut(s)	60
BfaI	CTAG	2 cut(s)	135, 245
BfmI	CTRYAG	1 cut(s)	42
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	3 cut(s)	45, 146, 282
BlsI	GCNGC	3 cut(s)	46, 147, 283
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	2 cut(s)	271, 303
BmrI	ACTGGG	1 cut(s)	304
BmsI	GCATC	3 cut(s)	111, 313, 470
BmtI	GCTAGC	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	304
Bpu14I	TTCGAA	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	323
Bse1I	ACTGG	2 cut(s)	299, 440
BseNI	ACTGG	2 cut(s)	299, 440
BseXI	GCAGC	2 cut(s)	56, 157
BshFI	GGCC	2 cut(s)	272, 378
BsnI	GGCC	2 cut(s)	272, 378
Bsp119I	TTCGAA	1 cut(s)	153
Bsp143I	GATC	5 cut(s)	97, 111, 164, 301, 334
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	2 cut(s)	272, 378
BspLI	GGNNCC	2 cut(s)	271, 303
BspMAI	CTGCAG	1 cut(s)	46
BspOI	GCTAGC	1 cut(s)	138
BspPI	GGATC	4 cut(s)	106, 172, 296, 309
BspT104I	TTCGAA	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	299, 440
BssMI	GATC	5 cut(s)	97, 111, 164, 301, 334
BssNAI	GTATAC	1 cut(s)	292
Bst1107I	GTATAC	1 cut(s)	292
Bst4CI	ACNGT	4 cut(s)	19, 73, 253, 448
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	49, 136
BstKTI	GATC	5 cut(s)	100, 114, 167, 304, 337
BstMBI	GATC	5 cut(s)	97, 111, 164, 301, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 349
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	2 cut(s)	56, 157
BstX2I	RGATCY	2 cut(s)	301, 334
BstYI	RGATCY	2 cut(s)	301, 334
BstZ17I	GTATAC	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	272, 378
BtsI	GCAGTG	2 cut(s)	333, 409
BtsIMutI	CAGTG	2 cut(s)	333, 409
Cac8I	GCNNGC	2 cut(s)	49, 136
Cfr13I	GGNCC	1 cut(s)	270
CviAII	CATG	3 cut(s)	31, 116, 435
CviJI	RGCY	6 cut(s)	134, 148, 272, 316, 343, 378
CviKI_1	RGCY	6 cut(s)	134, 148, 272, 316, 343, 378
DpnI	GATC	5 cut(s)	99, 113, 166, 303, 336
DpnII	GATC	5 cut(s)	97, 111, 164, 301, 334
Eco147I	AGGCCT	1 cut(s)	378
Eco32I	GATATC	1 cut(s)	241
EcoRV	GATATC	1 cut(s)	241
FaeI	CATG	3 cut(s)	34, 119, 438
FaiI	YATR	9 cut(s)	26, 32, 107, 117, 210, 292, 417, 436, 487
FatI	CATG	3 cut(s)	30, 115, 434
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	3 cut(s)	45, 146, 282
Fsp4HI	GCNGC	3 cut(s)	45, 146, 282
FspBI	CTAG	2 cut(s)	135, 245
GluI	GCNGC	3 cut(s)	45, 146, 282
HaeIII	GGCC	2 cut(s)	272, 378
Hin1II	CATG	3 cut(s)	34, 119, 438
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	3 cut(s)	175, 197, 213
HphI	GGTGA	2 cut(s)	159, 433
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	3 cut(s)	236, 258, 451
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	4 cut(s)	86, 280, 389, 448
HpyCH4III	ACNGT	4 cut(s)	19, 73, 253, 448
HpyCH4V	TGCA	4 cut(s)	44, 326, 331, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 349
Hsp92II	CATG	3 cut(s)	34, 119, 438
Kzo9I	GATC	5 cut(s)	97, 111, 164, 301, 334
LpnPI	CCDG	4 cut(s)	240, 280, 352, 453
Lsp1109I	GCAGC	2 cut(s)	56, 157
LweI	GCATC	3 cut(s)	111, 313, 470
MaeI	CTAG	2 cut(s)	135, 245
MaeIII	GTNAC	3 cut(s)	410, 421, 442
MalI	GATC	5 cut(s)	99, 113, 166, 303, 336
MboI	GATC	5 cut(s)	97, 111, 164, 301, 334
MboII	GAAGA	4 cut(s)	101, 167, 197, 468
MflI	RGATCY	2 cut(s)	301, 334
MluCI	AATT	2 cut(s)	188, 346
MlyI	GAGTC	2 cut(s)	191, 207
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	1 cut(s)	223
MseI	TTAA	2 cut(s)	192, 345
MslI	CAYNNNNRTG	1 cut(s)	449
MwoI	GCNNNNNNNGC	2 cut(s)	278, 349
NdeII	GATC	5 cut(s)	97, 111, 164, 301, 334
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	3 cut(s)	34, 119, 438
NlaIV	GGNNCC	2 cut(s)	271, 303
NmuCI	GTSAC	2 cut(s)	421, 442
NspV	TTCGAA	1 cut(s)	153
OliI	CACNNNNGTG	1 cut(s)	449
PceI	AGGCCT	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	3 cut(s)	46, 147, 283
PleI	GAGTC	2 cut(s)	191, 207
PpsI	GAGTC	2 cut(s)	191, 207
PspN4I	GGNNCC	2 cut(s)	271, 303
PspPI	GGNCC	1 cut(s)	270
PstI	CTGCAG	1 cut(s)	46
PsuI	RGATCY	2 cut(s)	301, 334
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	2 cut(s)	192, 345
SatI	GCNGC	3 cut(s)	45, 146, 282
Sau3AI	GATC	5 cut(s)	97, 111, 164, 301, 334
Sau96I	GGNCC	1 cut(s)	270
SchI	GAGTC	2 cut(s)	191, 207
SetI	ASST	7 cut(s)	136, 150, 172, 234, 291, 318, 345
SfaNI	GCATC	3 cut(s)	111, 313, 470
SfcI	CTRYAG	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	2 cut(s)	188, 346
SseBI	AGGCCT	1 cut(s)	378
SsiI	CCGC	1 cut(s)	281
SspMI	CTAG	2 cut(s)	135, 245
StuI	AGGCCT	1 cut(s)	378
TaaI	ACNGT	4 cut(s)	19, 73, 253, 448
TaqI	TCGA	4 cut(s)	75, 153, 237, 467
TasI	AATT	2 cut(s)	188, 346
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	2 cut(s)	192, 345
Tru9I	TTAA	2 cut(s)	192, 345
TscAI	CASTG	2 cut(s)	333, 409
TseFI	GTSAC	2 cut(s)	421, 442
TseI	GCWGC	2 cut(s)	44, 145
Tsp45I	GTSAC	2 cut(s)	421, 442
TspDTI	ATGAA	2 cut(s)	423, 462
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	2 cut(s)	333, 409
XapI	RAATTY	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	2 cut(s)	135, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.