Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008975

Physical Location & Seq

Genomic Coordinates Reverse (-)

1002765 .. 1005025

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCGACAGTGGGAAATTCAACGAACATATTTTGGCAAGAATCCCCCATTGGGAAAACTGAAAGGCAGAAGTTGTTAAATCAGAAGGGTTGTGTGGTGTGGATCACAGGGCTCAGTGGCTCAGGGAAAAGCACGTTAGCTTGCTCGCTTAGTAGAGAGCTGAACAACCGGGGAAAGCTATCATATATTCTTGATGGTGACAATCTTCGTCATGGTTTGAACAAAGATCTTGGTTTCAAGGCAGAGGATAGAGTGGAAAATATACGCAGGGTCGGAGAAGTAGCCAAACTCTTTGCGGATGCTGGTTTAATCTGTATTGCCAGCCTCATATCCCCGTATAGAAAAGACCGTGACGCCTGCAGGGAAATGATACAGAATTCATCTTTTATTGAGGTTTTCATGAACATGTCTCTGCAATTGTGTGAAGCAAGGGACCCTAAAGGCCTATACAAGCTTGCACGTGCAGGAAAGATCAAAGGTTTCACAGGAATAGATGATCCGTATGAGTCTCCCTTGAACTGTGAGATAGAGTTGAAAGAGAAAGAGGGAGAGTGTCCTTCCCCTGTAGCTATGGCTGAGGAAGTGATCTCTTATCTAGAAGACAAAGGTTTCCTTCAAAACGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

208

Amino Acids

23.15

Weight (kDa)

5.69

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	29 - 178	4.1e-70	Adenylylsulphate kinase
AAA_33	PF13671	32 - 144	3.7e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03900 AT3G03900 AT3G03900
malus_domestica	MD12G1003900.v1.1 MD14G1002700.v1.1
prunus_persica	Prupe.7G004400_v2.0.a1 Prupe.7G004400_v2.0.a1 Prupe.7G004400_v2.0.a1 Prupe.7G004400_v2.0.a1 Prupe.7G004400_v2.0.a1
pyrus_communis	pycom12g00330 pycom14g00040
rosa_chinensis	RchiOBHm_Chr3g0497061
rosa_laevigata	RLG00000022484
rosa_multiflora	Rmu_sc0001727.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388430
rosa_rugosa	Rorug03G0289200 Rorug03G0289300 Rorug03G0289300
rosa_samantha	Rh3AG333600 Rh3BG370800
rosa_wichuraiana	Rw3G029300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	2 cut(s)	110, 491
AcsI	RAATTY	2 cut(s)	16, 376
AcvI	CACGTG	1 cut(s)	461
AcyI	GRCGYC	1 cut(s)	354
AfiI	CCNNNNNNNGG	1 cut(s)	51
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	6 cut(s)	21, 220, 238, 517, 535, 617
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	5 cut(s)	140, 160, 178, 454, 569
AluI	AGCT	5 cut(s)	140, 160, 178, 454, 569
Alw26I	GTCTC	2 cut(s)	414, 513
AlwI	GGATC	2 cut(s)	110, 491
AoxI	GGCC	1 cut(s)	442
ApoI	RAATTY	2 cut(s)	16, 376
AspS9I	GGNCC	1 cut(s)	433
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	114
BbrPI	CACGTG	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	606
BbvCI	CCTCAGC	1 cut(s)	576
BccI	CCATC	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	2 cut(s)	414, 513
BfaI	CTAG	1 cut(s)	596
BfmI	CTRYAG	2 cut(s)	358, 564
BglII	AGATCT	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	2 cut(s)	434, 435
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	606
Bpu10I	CCTNAGC	2 cut(s)	121, 576
BpuMI	CCSGG	1 cut(s)	170
BsaAI	YACGTR	1 cut(s)	461
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMII	CTCAG	3 cut(s)	127, 135, 567
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	2 cut(s)	414, 513
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	5 cut(s)	102, 226, 471, 496, 585
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	3 cut(s)	126, 134, 568
BspHI	TCATGA	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	434, 435
BspMAI	CTGCAG	1 cut(s)	362
BspPI	GGATC	2 cut(s)	110, 491
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	5 cut(s)	102, 226, 471, 496, 585
BssNI	GRCGYC	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	10, 350, 521
BstACI	GRCGYC	1 cut(s)	354
BstBAI	YACGTR	1 cut(s)	461
BstC8I	GCNNGC	5 cut(s)	142, 146, 322, 358, 456
BstDEI	CTNAG	4 cut(s)	113, 121, 149, 576
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	5 cut(s)	105, 229, 474, 499, 588
BstMAI	GTCTC	2 cut(s)	414, 513
BstMBI	GATC	5 cut(s)	102, 226, 471, 496, 585
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	2 cut(s)	358, 564
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	15, 121
Cac8I	GCNNGC	5 cut(s)	142, 146, 322, 358, 456
CciI	TCATGA	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	433
CseI	GACGC	1 cut(s)	362
CviAII	CATG	3 cut(s)	212, 400, 406
DdeI	CTNAG	4 cut(s)	113, 121, 149, 576
DpnI	GATC	5 cut(s)	104, 228, 473, 498, 587
DpnII	GATC	5 cut(s)	102, 226, 471, 496, 585
Eco147I	AGGCCT	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	433
Eco72I	CACGTG	1 cut(s)	461
EcoO109I	RGGNCCY	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	3 cut(s)	215, 403, 409
FalI	AAGNNNNNCTT	1 cut(s)	597
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	3 cut(s)	211, 399, 405
FblI	GTMKAC	1 cut(s)	5
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	596
HaeIII	GGCC	1 cut(s)	444
HapII	CCGG	1 cut(s)	169
HgaI	GACGC	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	3 cut(s)	215, 403, 409
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	2 cut(s)	41, 506
HpaII	CCGG	1 cut(s)	169
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	84, 275
Hpy188III	TCNNGA	3 cut(s)	191, 400, 596
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	3 cut(s)	79, 567, 623
HpyCH4III	ACNGT	3 cut(s)	10, 350, 521
HpyCH4IV	ACGT	2 cut(s)	134, 460
HpyCH4V	TGCA	4 cut(s)	360, 415, 458, 464
HpyF3I	CTNAG	4 cut(s)	113, 121, 149, 576
HpySE526I	ACGT	2 cut(s)	134, 460
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	3 cut(s)	215, 403, 409
KflI	GGGWCCC	1 cut(s)	433
Kzo9I	GATC	5 cut(s)	102, 226, 471, 496, 585
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	596
MaeII	ACGT	2 cut(s)	134, 460
MaeIII	GTNAC	2 cut(s)	197, 350
MalI	GATC	5 cut(s)	104, 228, 473, 498, 587
MboI	GATC	5 cut(s)	102, 226, 471, 496, 585
MboII	GAAGA	2 cut(s)	197, 611
MfeI	CAATTG	1 cut(s)	416
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	3 cut(s)	16, 376, 416
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	5 cut(s)	238, 335, 385, 538, 571
MseI	TTAA	2 cut(s)	77, 308
MslI	CAYNNNNRTG	1 cut(s)	404
MspI	CCGG	1 cut(s)	169
MspR9I	CCNGG	1 cut(s)	170
MunI	CAATTG	1 cut(s)	416
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	5 cut(s)	102, 226, 471, 496, 585
NlaIII	CATG	3 cut(s)	215, 403, 409
NlaIV	GGNNCC	2 cut(s)	434, 435
NmuCI	GTSAC	2 cut(s)	197, 350
NspI	RCATGY	1 cut(s)	409
PagI	TCATGA	1 cut(s)	399
PceI	AGGCCT	1 cut(s)	444
PciI	ACATGT	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	41
PleI	GAGTC	1 cut(s)	514
PmaCI	CACGTG	1 cut(s)	461
PmlI	CACGTG	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	514
Ppu21I	YACGTR	1 cut(s)	461
PpuMI	RGGWCCY	1 cut(s)	433
PscI	ACATGT	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	433
PspCI	CACGTG	1 cut(s)	461
PspN4I	GGNNCC	2 cut(s)	434, 435
PspPI	GGNCC	1 cut(s)	433
PspPPI	RGGWCCY	1 cut(s)	433
PstI	CTGCAG	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	226
RseI	CAYNNNNRTG	1 cut(s)	404
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	77, 308
Sau3AI	GATC	5 cut(s)	102, 226, 471, 496, 585
Sau96I	GGNCC	1 cut(s)	433
SbfI	CCTGCAGG	1 cut(s)	362
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	1 cut(s)	170
SdaI	CCTGCAGG	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	2 cut(s)	358, 564
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	404
Sse8387I	CCTGCAGG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	16, 376, 416
SseBI	AGGCCT	1 cut(s)	444
SsiI	CCGC	1 cut(s)	296
SspMI	CTAG	1 cut(s)	596
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	3 cut(s)	10, 350, 521
TaiI	ACGT	2 cut(s)	137, 463
TaqI	TCGA	1 cut(s)	5
TasI	AATT	3 cut(s)	16, 376, 416
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	77, 308
Tru9I	TTAA	2 cut(s)	77, 308
TscAI	CASTG	2 cut(s)	15, 121
TseFI	GTSAC	2 cut(s)	197, 350
Tsp45I	GTSAC	2 cut(s)	197, 350
TspDTI	ATGAA	3 cut(s)	369, 388, 416
TspGWI	ACGGA	1 cut(s)	489
TspRI	CASTG	2 cut(s)	15, 121
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	2 cut(s)	16, 376
XbaI	TCTAGA	1 cut(s)	595
XceI	RCATGY	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.