Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001727.1

Orthogroup ID

OG0008975

Physical Location & Seq

Genomic Coordinates Forward (+)

9521 .. 12990

Gene Structure 3470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001727.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgtctactatcagcaactcaacaaatatattttggcaagaatgtcctgttgggaaagctgaaaggcagaaactactcaaccaaaagggctgtgttgtatggattacaggtctcagcggatcagggaaaagtacgctggcgtgctcactaagtagagaactgcactcgaggggaaagctgtcatatatccttgatggtgataaccttcgacatggtatcaacaaggatcttggtttcaaaccagaagaccggactgaaaatattcgcagagttggttttaccggaatcgatgatccatatgaacaaccactgaactgtgagatagaaatccagcaaaataatggagtttgtcccctgcctgcagccctggcaggccaggtactgacatacttggaggagaaaggctttcttcaagttgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

140

Amino Acids

15.51

Weight (kDa)

5.73

Isoelectric Point (pI)

50.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03900 AT3G03900 AT3G03900
malus_domestica	MD12G1003900.v1.1 MD14G1002700.v1.1
prunus_persica	Prupe.7G004400_v2.0.a1 Prupe.7G004400_v2.0.a1 Prupe.7G004400_v2.0.a1 Prupe.7G004400_v2.0.a1 Prupe.7G004400_v2.0.a1
pyrus_communis	pycom12g00330 pycom14g00040
rosa_chinensis	RchiOBHm_Chr3g0497061
rosa_laevigata	RLG00000022484
rosa_multiflora	Rmu_sc0001727.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388430
rosa_rugosa	Rorug03G0289200 Rorug03G0289300 Rorug03G0289300
rosa_samantha	Rh3AG333600 Rh3BG370800
rosa_wichuraiana	Rw3G029300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	3 cut(s)	127, 234, 287
AfaI	GTAC	2 cut(s)	133, 381
AgsI	TTSAA	2 cut(s)	238, 413
AjnI	CCWGG	2 cut(s)	366, 375
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	2 cut(s)	59, 178
AluI	AGCT	2 cut(s)	59, 178
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	3 cut(s)	127, 234, 287
AlwNI	CAGNNNCTG	1 cut(s)	382
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	1 cut(s)	373
ApeKI	GCWGC	1 cut(s)	362
Asp700I	GAANNNNTTC	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	2 cut(s)	368, 377
BcoDI	GTCTC	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	2 cut(s)	368, 377
BmeT110I	CYCGRG	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	368, 377
BpiI	GAAGAC	1 cut(s)	252
Bsa29I	ATCGAT	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	366
BsaWI	WCCGGW	2 cut(s)	249, 281
Bse8I	GATNNNNATC	1 cut(s)	326
BseBI	CCWGG	2 cut(s)	368, 377
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	366
BseJI	GATNNNNATC	1 cut(s)	326
BseMII	CTCAG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	374
BsgI	GTGCAG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	375
BshVI	ATCGAT	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	250, 282
BslFI	GGGAC	1 cut(s)	336
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	1 cut(s)	375
Bso31I	GGTCTC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	119, 226, 292
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	375
BspCNI	CTCAG	1 cut(s)	126
BspDI	ATCGAT	1 cut(s)	288
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	3 cut(s)	127, 234, 287
BspTNI	GGTCTC	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	3 cut(s)	119, 226, 292
Bst2UI	CCWGG	2 cut(s)	368, 377
Bst4CI	ACNGT	1 cut(s)	317
BstC8I	GCNNGC	4 cut(s)	138, 142, 360, 373
BstDEI	CTNAG	2 cut(s)	113, 149
BstKTI	GATC	3 cut(s)	122, 229, 295
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	3 cut(s)	119, 226, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	2 cut(s)	368, 377
BstSCI	CCNGG	2 cut(s)	366, 375
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	374
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
Bsu15I	ATCGAT	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	375
BsuTUI	ATCGAT	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	308
Cac8I	GCNNGC	4 cut(s)	138, 142, 360, 373
CaiI	CAGNNNCTG	1 cut(s)	382
ClaI	ATCGAT	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	132, 380
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	6 cut(s)	59, 90, 178, 365, 375, 405
CviKI_1	RGCY	6 cut(s)	59, 90, 178, 365, 375, 405
CviQI	GTAC	2 cut(s)	132, 380
DdeI	CTNAG	2 cut(s)	113, 149
DpnI	GATC	3 cut(s)	121, 228, 294
DpnII	GATC	3 cut(s)	119, 226, 292
Eco31I	GGTCTC	1 cut(s)	116
Eco88I	CYCGRG	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	366, 375
FaeI	CATG	1 cut(s)	215
FaiI	YATR	8 cut(s)	29, 100, 184, 186, 213, 298, 300, 388
FalI	AAGNNNNNCTT	1 cut(s)	393
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	1 cut(s)	211
FauNDI	CATATG	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	363
GluI	GCNGC	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	375
HapII	CCGG	2 cut(s)	250, 282
Hin1II	CATG	1 cut(s)	215
HinfI	GANTC	1 cut(s)	285
HpaII	CCGG	2 cut(s)	250, 282
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	6
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	2 cut(s)	163, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	113, 149
Hsp92II	CATG	1 cut(s)	215
Kzo9I	GATC	3 cut(s)	119, 226, 292
Lsp1109I	GCAGC	1 cut(s)	374
MalI	GATC	3 cut(s)	121, 228, 294
MboI	GATC	3 cut(s)	119, 226, 292
MboII	GAAGA	2 cut(s)	257, 401
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	146
MnlI	CCTC	2 cut(s)	162, 388
MroXI	GAANNNNTTC	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	2 cut(s)	250, 282
MspR9I	CCNGG	2 cut(s)	368, 377
MvaI	CCWGG	2 cut(s)	368, 377
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	3 cut(s)	119, 226, 292
NlaIII	CATG	1 cut(s)	215
PaeR7I	CTCGAG	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	364
Psp6I	CCWGG	2 cut(s)	366, 375
PspGI	CCWGG	2 cut(s)	366, 375
PspXI	VCTCGAGB	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	2 cut(s)	133, 381
RsaNI	GTAC	2 cut(s)	132, 380
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	3 cut(s)	119, 226, 292
ScrFI	CCNGG	2 cut(s)	368, 377
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	5 cut(s)	61, 112, 180, 207, 381
SfcI	CTRYAG	1 cut(s)	360
Sfr274I	CTCGAG	1 cut(s)	166
SlaI	CTCGAG	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
SsiI	CCGC	1 cut(s)	117
SspI	AATATT	1 cut(s)	262
StyD4I	CCNGG	2 cut(s)	366, 375
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	3 cut(s)	167, 208, 288
TfiI	GAWTC	1 cut(s)	285
TscAI	CASTG	1 cut(s)	315
TseI	GCWGC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XhoI	CTCGAG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.