Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008975

Physical Location & Seq

Genomic Coordinates Forward (+)

389223 .. 392959

Gene Structure 3737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1002700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTCTACTTTGAACAATTCAACAAATGTATTTTGGCAAGAATGTCAGATTGGGAAGGTCGATAGGCAGAAACTACTGAATCAAAAGGGATGTGTTGTATGGATTACTGGTCTCAGTGGCTCAGGGAAAAGTACACTGGCATGCGCATTAAGTAGAGAACTACACTCTAGGGGAAAGTTGTCATATGTCCTTGATGGAGATAACCTTAGGCATGGTCTGAACAAGGATCTTGGTTTCAAAGCCGAAGACCGGGCTGAAAATATACGCAGAGTTGGGGAGGTAGCAAAACTCTTTGCAGATGCGGGATTGATTTGTATTGCTAGCCTCATATCTCCTTATAGGAAAGAACGAGATGCTTGCCGTGCAATGTTATCTGATGCAAACTTTATTGAGGCAAGACTTCATATGGTTCTTGTTTTCATGAACATGCCCCTAGAATTATGTGAGTCAAGAGATGCAAAAGGCCTTTACAAGCTTGCACGTGCTGGAAAAGTTAAGGGTTTTACTGGAATAGATGACCCTTACGAGCCACCAGAGAAATGCGAGATAGAAATAGAACAAAAAAATGGAGTTTGCCCCATGCCTGCAGCCATGGCAGGCCAAGTAGTGTCCTACTTGGAGGTGAAAGGATTTCTTCAGGTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

216

Amino Acids

23.8

Weight (kDa)

8.38

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	29 - 185	6.5e-67	Adenylylsulphate kinase
AAA_33	PF13671	32 - 154	1.6e-08	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03900 AT3G03900 AT3G03900
malus_domestica	MD12G1003900.v1.1 MD14G1002700.v1.1
prunus_persica	Prupe.7G004400_v2.0.a1 Prupe.7G004400_v2.0.a1 Prupe.7G004400_v2.0.a1 Prupe.7G004400_v2.0.a1 Prupe.7G004400_v2.0.a1
pyrus_communis	pycom12g00330 pycom14g00040
rosa_chinensis	RchiOBHm_Chr3g0497061
rosa_laevigata	RLG00000022484
rosa_multiflora	Rmu_sc0001727.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388430
rosa_rugosa	Rorug03G0289200 Rorug03G0289300 Rorug03G0289300
rosa_samantha	Rh3AG333600 Rh3BG370800
rosa_wichuraiana	Rw3G029300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	302
AclWI	GGATC	1 cut(s)	234
AcuI	CTGAAG	1 cut(s)	620
AcvI	CACGTG	1 cut(s)	482
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	3 cut(s)	13, 21, 238
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	1 cut(s)	475
AluI	AGCT	1 cut(s)	475
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	2 cut(s)	463, 598
ApeKI	GCWGC	1 cut(s)	587
AspLEI	GCGC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	634
AsuNHI	GCTAGC	1 cut(s)	320
AxyI	CCTNAGG	1 cut(s)	206
BbrPI	CACGTG	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	599
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	345
BcgI	CGANNNNNNTGC	2 cut(s)	339, 373
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	3 cut(s)	168, 321, 434
BfmI	CTRYAG	1 cut(s)	585
BisI	GCNGC	1 cut(s)	588
BlsI	GCNGC	1 cut(s)	589
Bme1390I	CCNGG	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	4 cut(s)	289, 343, 367, 445
BmtI	GCTAGC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	252
Bpu10I	CCTNAGC	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	251
BsaAI	YACGTR	1 cut(s)	482
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	591
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse1I	ACTGG	3 cut(s)	112, 141, 511
Bse21I	CCTNAGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	2 cut(s)	127, 135
BseNI	ACTGG	3 cut(s)	112, 141, 511
BseXI	GCAGC	1 cut(s)	599
BshFI	GGCC	2 cut(s)	465, 600
BsiSI	CCGG	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	2 cut(s)	465, 600
Bso31I	GGTCTC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	226
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	2 cut(s)	465, 600
BspCNI	CTCAG	2 cut(s)	126, 134
BspHI	TCATGA	1 cut(s)	420
BspMAI	CTGCAG	1 cut(s)	589
BspOI	GCTAGC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	3 cut(s)	112, 141, 511
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	591
BstBAI	YACGTR	1 cut(s)	482
BstC8I	GCNNGC	6 cut(s)	142, 322, 358, 477, 585, 598
BstDEI	CTNAG	3 cut(s)	113, 121, 206
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 593
BstNSI	RCATGY	2 cut(s)	144, 430
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	1 cut(s)	599
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
Bsu36I	CCTNAGG	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	465, 600
BtgI	CCRYGG	1 cut(s)	591
BtsCI	GGATG	1 cut(s)	95
BtsIMutI	CAGTG	2 cut(s)	121, 134
Cac8I	GCNNGC	6 cut(s)	142, 322, 358, 477, 585, 598
CciI	TCATGA	1 cut(s)	420
CfoI	GCGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	6 cut(s)	141, 212, 421, 427, 580, 592
CviJI	RGCY	9 cut(s)	120, 242, 254, 324, 465, 475, 529, 590, 600
CviKI_1	RGCY	9 cut(s)	120, 242, 254, 324, 465, 475, 529, 590, 600
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	3 cut(s)	113, 121, 206
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	591
Eco147I	AGGCCT	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	620
Eco72I	CACGTG	1 cut(s)	482
Eco81I	CCTNAGG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	591
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	6 cut(s)	144, 215, 424, 430, 583, 595
FalI	AAGNNNNNCTT	1 cut(s)	618
FatI	CATG	6 cut(s)	140, 211, 420, 426, 579, 591
FauI	CCCGC	1 cut(s)	295
FauNDI	CATATG	2 cut(s)	184, 405
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	588
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	588
FspAI	RTGCGCAY	1 cut(s)	145
FspBI	CTAG	3 cut(s)	168, 321, 434
FspI	TGCGCA	1 cut(s)	145
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	588
HaeIII	GGCC	2 cut(s)	465, 600
HapII	CCGG	1 cut(s)	250
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	6 cut(s)	144, 215, 424, 430, 583, 595
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	2 cut(s)	79, 446
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	1 cut(s)	634
Hpy166II	GTNNAC	2 cut(s)	6, 134
Hpy188I	TCNGA	3 cut(s)	48, 219, 376
Hpy188III	TCNNGA	2 cut(s)	421, 450
Hpy8I	GTNNAC	2 cut(s)	6, 134
HpyAV	CCTTC	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	6 cut(s)	296, 365, 380, 458, 479, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 593
HpyF3I	CTNAG	3 cut(s)	113, 121, 206
HpySE526I	ACGT	1 cut(s)	481
Hsp92II	CATG	6 cut(s)	144, 215, 424, 430, 583, 595
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	226
Lsp1109I	GCAGC	1 cut(s)	599
LweI	GCATC	4 cut(s)	289, 343, 367, 445
MaeI	CTAG	3 cut(s)	168, 321, 434
MaeII	ACGT	1 cut(s)	481
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	257, 626
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	2 cut(s)	16, 437
MlyI	GAGTC	1 cut(s)	455
MnlI	CCTC	4 cut(s)	271, 335, 385, 613
MseI	TTAA	2 cut(s)	149, 495
MslI	CAYNNNNRTG	2 cut(s)	139, 425
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	2 cut(s)	362, 593
NciI	CCSGG	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	591
NdeI	CATATG	2 cut(s)	184, 405
NdeII	GATC	1 cut(s)	226
NheI	GCTAGC	1 cut(s)	320
NlaIII	CATG	6 cut(s)	144, 215, 424, 430, 583, 595
NsbI	TGCGCA	1 cut(s)	145
NspI	RCATGY	2 cut(s)	144, 430
PaeI	GCATGC	1 cut(s)	144
PagI	TCATGA	1 cut(s)	420
PceI	AGGCCT	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	589
PleI	GAGTC	1 cut(s)	454
PmaCI	CACGTG	1 cut(s)	482
PmlI	CACGTG	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	454
Ppu21I	YACGTR	1 cut(s)	482
PspCI	CACGTG	1 cut(s)	482
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
RseI	CAYNNNNRTG	2 cut(s)	139, 425
SaqAI	TTAA	2 cut(s)	149, 495
SatI	GCNGC	1 cut(s)	588
Sau3AI	GATC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	1 cut(s)	251
SetI	ASST	7 cut(s)	60, 207, 282, 477, 484, 624, 642
SfaNI	GCATC	4 cut(s)	289, 343, 367, 445
SfcI	CTRYAG	1 cut(s)	585
SmiMI	CAYNNNNRTG	2 cut(s)	139, 425
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	16, 437
SseBI	AGGCCT	1 cut(s)	465
SsiI	CCGC	1 cut(s)	302
SspMI	CTAG	3 cut(s)	168, 321, 434
StuI	AGGCCT	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	591
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	16, 437
TatI	WGTACW	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	2 cut(s)	149, 495
Tru9I	TTAA	2 cut(s)	149, 495
TscAI	CASTG	2 cut(s)	121, 141
TseI	GCWGC	1 cut(s)	587
TspDTI	ATGAA	3 cut(s)	392, 409, 437
TspRI	CASTG	2 cut(s)	121, 141
XceI	RCATGY	2 cut(s)	144, 430
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	3 cut(s)	168, 321, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.