Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008975

Physical Location & Seq

Genomic Coordinates Forward (+)

368254 .. 370523

Gene Structure 2270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00330.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCGACTTTGAACAATTCAACAAATATATTTTGGCAAGAATGTCAGGTTGGGAAGGTTGATAGGCAGAAACTACTCAATCAAAAGGGATGTGTTGTATGGATTACTGGTCTCAGTGGATCAGGGAAAAGTACACTGGCATGCTCATTAAGTAGAGAACTACACTCTAGGGGAAAGTTGTCATATGTCCTTGATGGAGATAACCTTCGGCATGGTCTGAAGAAGGATCTTGGTTTCAAAGTCGAAGACCGAGCTGAAAATATACGCAGAGTTGGGGAGGTAGCAAAACTGTTTGCAGATGCAGGATTGTTCTCTATTGCTAGCCTCATATCTCCTTATAAGAAAGATCGGGATGCCTGCCGTGCAATGTTACCTGATGCAAACTTTATTGAGGTTTTCATGAACATGCCCCTAGAATTATGCGAGTCAAGAGATGCAAAAGGACTTTATAAGCTTGCACGTGCTGGAAAGATTAAAGGTTTTACTGGAATAGACGACCCTTACGAGCGACCAGAGAACTGCGAGATAGAAATAGGACAAGAAAATGGAGTTTGTCCCATGCCTGCAGCCATGGCAGGCCGAGTAGTGTCCTACTTGGAGGAGAAAGGATTTCTTCAAGTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

209

Amino Acids

23.07

Weight (kDa)

8.12

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03900 AT3G03900 AT3G03900
malus_domestica	MD12G1003900.v1.1 MD14G1002700.v1.1
prunus_persica	Prupe.7G004400_v2.0.a1 Prupe.7G004400_v2.0.a1 Prupe.7G004400_v2.0.a1 Prupe.7G004400_v2.0.a1 Prupe.7G004400_v2.0.a1
pyrus_communis	pycom12g00330 pycom14g00040
rosa_chinensis	RchiOBHm_Chr3g0497061
rosa_laevigata	RLG00000022484
rosa_multiflora	Rmu_sc0001727.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388430
rosa_rugosa	Rorug03G0289200 Rorug03G0289300 Rorug03G0289300
rosa_samantha	Rh3AG333600 Rh3BG370800
rosa_wichuraiana	Rw3G029300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	339, 450
AccI	GTMKAC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	127, 234
AcuI	CTGAAG	1 cut(s)	239
AcvI	CACGTG	1 cut(s)	461
AfaI	GTAC	1 cut(s)	133
AgsI	TTSAA	4 cut(s)	13, 21, 238, 617
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	2 cut(s)	254, 454
AluI	AGCT	2 cut(s)	254, 454
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	127, 234
AoxI	GGCC	1 cut(s)	577
ApeKI	GCWGC	1 cut(s)	566
AsuNHI	GCTAGC	1 cut(s)	320
BbrPI	CACGTG	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	578
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	3 cut(s)	168, 321, 413
BfmI	CTRYAG	1 cut(s)	564
BisI	GCNGC	1 cut(s)	567
BlsI	GCNGC	1 cut(s)	568
BmsI	GCATC	4 cut(s)	289, 343, 367, 424
BmtI	GCTAGC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	461
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	570
Bse1I	ACTGG	3 cut(s)	112, 141, 490
Bse3DI	GCAATG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	2 cut(s)	95, 358
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	3 cut(s)	112, 141, 490
BseRI	GAGGAG	1 cut(s)	614
BseXI	GCAGC	1 cut(s)	578
BshFI	GGCC	1 cut(s)	579
BslFI	GGGAC	1 cut(s)	540
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	540
BsnI	GGCC	1 cut(s)	579
Bso31I	GGTCTC	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	119, 226, 346
Bsp19I	CCATGG	1 cut(s)	570
BspANI	GGCC	1 cut(s)	579
BspCNI	CTCAG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	399
BspMAI	CTGCAG	1 cut(s)	568
BspOI	GCTAGC	1 cut(s)	324
BspPI	GGATC	2 cut(s)	127, 234
BspTNI	GGTCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	3 cut(s)	112, 141, 490
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	3 cut(s)	119, 226, 346
BssT1I	CCWWGG	1 cut(s)	570
Bst4CI	ACNGT	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	461
BstC8I	GCNNGC	6 cut(s)	142, 322, 358, 456, 564, 577
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	570
BstF5I	GGATG	2 cut(s)	95, 358
BstKTI	GATC	3 cut(s)	122, 229, 349
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	3 cut(s)	119, 226, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 572
BstNSI	RCATGY	2 cut(s)	144, 409
BstSFI	CTRYAG	1 cut(s)	564
BstV1I	GCAGC	1 cut(s)	578
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	579
BtgI	CCRYGG	1 cut(s)	570
BtsCI	GGATG	2 cut(s)	95, 358
BtsIMutI	CAGTG	2 cut(s)	121, 134
Cac8I	GCNNGC	6 cut(s)	142, 322, 358, 456, 564, 577
CciI	TCATGA	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	6 cut(s)	141, 212, 400, 406, 559, 571
CviJI	RGCY	5 cut(s)	254, 324, 454, 569, 579
CviKI_1	RGCY	5 cut(s)	254, 324, 454, 569, 579
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	3 cut(s)	121, 228, 348
DpnII	GATC	3 cut(s)	119, 226, 346
Eco130I	CCWWGG	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	239
Eco72I	CACGTG	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	6 cut(s)	144, 215, 403, 409, 562, 574
FalI	AAGNNNNNCTT	1 cut(s)	597
FaqI	GGGAC	1 cut(s)	540
FatI	CATG	6 cut(s)	140, 211, 399, 405, 558, 570
FauNDI	CATATG	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	567
FokI	GGATG	2 cut(s)	102, 365
Fsp4HI	GCNGC	1 cut(s)	567
FspBI	CTAG	3 cut(s)	168, 321, 413
GluI	GCNGC	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	579
Hin1II	CATG	6 cut(s)	144, 215, 403, 409, 562, 574
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	6, 134
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	3 cut(s)	350, 400, 429
Hpy8I	GTNNAC	2 cut(s)	6, 134
HpyAV	CCTTC	3 cut(s)	49, 215, 217
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	7 cut(s)	296, 302, 365, 380, 437, 458, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 572
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	6 cut(s)	144, 215, 403, 409, 562, 574
Kzo9I	GATC	3 cut(s)	119, 226, 346
Lsp1109I	GCAGC	1 cut(s)	578
LweI	GCATC	4 cut(s)	289, 343, 367, 424
MaeI	CTAG	3 cut(s)	168, 321, 413
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	3 cut(s)	121, 228, 348
MboI	GATC	3 cut(s)	119, 226, 346
MboII	GAAGA	3 cut(s)	232, 257, 605
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	2 cut(s)	16, 416
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	4 cut(s)	271, 335, 385, 592
MseI	TTAA	2 cut(s)	149, 474
MslI	CAYNNNNRTG	2 cut(s)	139, 404
MwoI	GCNNNNNNNGC	2 cut(s)	362, 572
NcoI	CCATGG	1 cut(s)	570
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	3 cut(s)	119, 226, 346
NheI	GCTAGC	1 cut(s)	320
NlaIII	CATG	6 cut(s)	144, 215, 403, 409, 562, 574
NmeAIII	GCCGAG	1 cut(s)	605
NspI	RCATGY	2 cut(s)	144, 409
PaeI	GCATGC	1 cut(s)	144
PagI	TCATGA	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PkrI	GCNGC	1 cut(s)	568
PleI	GAGTC	1 cut(s)	433
PmaCI	CACGTG	1 cut(s)	461
PmlI	CACGTG	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	433
Ppu21I	YACGTR	1 cut(s)	461
PsiI	TTATAA	2 cut(s)	339, 450
PspCI	CACGTG	1 cut(s)	461
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
RseI	CAYNNNNRTG	2 cut(s)	139, 404
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	149, 474
SatI	GCNGC	1 cut(s)	567
Sau3AI	GATC	3 cut(s)	119, 226, 346
SchI	GAGTC	1 cut(s)	434
SfaNI	GCATC	4 cut(s)	289, 343, 367, 424
SfcI	CTRYAG	1 cut(s)	564
SmiMI	CAYNNNNRTG	2 cut(s)	139, 404
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	16, 416
SspMI	CTAG	3 cut(s)	168, 321, 413
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	2 cut(s)	5, 243
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	2 cut(s)	16, 416
TatI	WGTACW	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	149, 474
Tru9I	TTAA	2 cut(s)	149, 474
TscAI	CASTG	2 cut(s)	121, 141
TseI	GCWGC	1 cut(s)	566
TspDTI	ATGAA	2 cut(s)	388, 416
TspRI	CASTG	2 cut(s)	121, 141
XceI	RCATGY	2 cut(s)	144, 409
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	3 cut(s)	168, 321, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.