AT3G04620

At2g34160-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016514
Physical Location & Seq
Reverse (-)
1255398 .. 1257017
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G04620.1

Sequence Viewer

Length: 495 bp
ATGGCGATGGAAGTAGCAACACCGGCTCCGGCACCAATCCCATCGGAGAGGAACATCGTTCTCGCGCCTGCAACAACAACAACAACCGCCACTGTTGAGACTCACAAGAAGAACAGGATCCAAGTTTCCAACACCAAGAAGCCATTGTTCTTCTACGTTAATCTCGCCAAGAGGTACATTCAGCAACACAACGAGGTCGAGCTTTCTGCACTTGGAATGGCAATCACAACTGTGGTAACAATCTCTGAGATCTTGAAGAACAATGGACTTGCAACAGAGAAGAAGGTGCTAACATCGACTGTGGGAATGAAAGATGAGACAAAAGGGAAGATGGTCCAGAAGGCAAAGATTGAGATAGTGTTGGGCAAGTCAGACAAGTTTGACTCTTTGGTGCCACCTGTGACCAACGGCAAGACTCCGGAGGAGGAAGCCAGTGCAGAGACGGAAGCTTCCGTGGAAGCACAAGAAGAAGTTGCCGCTGCCACCGAGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

164

Amino Acids

17.67

Weight (kDa)

5.79

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 38 - 100 6.2e-13 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04620
fragaria_vesca FvH4_6g02590
malus_domestica MD04G1226900.v1.1 MD12G1243900.v1.1
prunus_persica Prupe.6G345600_v2.0.a1
pyrus_communis pycom04g20020
rosa_chinensis RchiOBHm_Chr3g0450501
rosa_laevigata RLG00000025726
rosa_multiflora Rmu_sc0000078.1_g000053
rosa_roxburghii Rroxscaffold_6G00428180
rosa_rugosa Rorug02G0628100
rosa_samantha Rh3BG029300 Rh3DG029000
rosa_wichuraiana Rw3G002220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 31, 391
AccII CGCG 1 cut(s) 65
AccIII TCCGGA 1 cut(s) 418
AciI CCGC 2 cut(s) 87, 477
AclWI GGATC 2 cut(s) 112, 125
AfaI GTAC 1 cut(s) 176
AgsI TTSAA 1 cut(s) 256
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 2 cut(s) 202, 449
AluI AGCT 2 cut(s) 202, 449
Alw26I GTCTC 3 cut(s) 92, 311, 434
AlwI GGATC 2 cut(s) 112, 125
Aor13HI TCCGGA 1 cut(s) 418
ApeKI GCWGC 1 cut(s) 479
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 334
AvaII GGWCC 1 cut(s) 334
BamHI GGATCC 1 cut(s) 117
BanI GGYRCC 2 cut(s) 31, 391
BbvI GCAGC 1 cut(s) 466
BccI CCATC 2 cut(s) 49, 325
BceAI ACGGC 1 cut(s) 424
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BcoDI GTCTC 3 cut(s) 92, 311, 434
BfaI CTAG 1 cut(s) 493
BglII AGATCT 1 cut(s) 249
BisI GCNGC 2 cut(s) 477, 480
BlsI GCNGC 2 cut(s) 478, 481
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 4 cut(s) 27, 33, 119, 393
BsaJI CCNNGG 2 cut(s) 453, 486
BsaWI WCCGGW 1 cut(s) 418
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 432
BseAI TCCGGA 1 cut(s) 418
BseDI CCNNGG 2 cut(s) 453, 486
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 432
BseRI GAGGAG 1 cut(s) 437
BseXI GCAGC 1 cut(s) 466
BsgI GTGCAG 2 cut(s) 192, 456
Bsh1236I CGCG 1 cut(s) 65
BshNI GGYRCC 2 cut(s) 31, 391
BsiSI CCGG 3 cut(s) 23, 29, 419
BsmAI GTCTC 3 cut(s) 92, 311, 434
BsmBI CGTCTC 1 cut(s) 434
Bsp13I TCCGGA 1 cut(s) 418
Bsp143I GATC 2 cut(s) 117, 249
BspACI CCGC 2 cut(s) 87, 477
BspCNI CTCAG 1 cut(s) 238
BspEI TCCGGA 1 cut(s) 418
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 4 cut(s) 27, 33, 119, 393
BspPI GGATC 2 cut(s) 112, 125
BspT107I GGYRCC 2 cut(s) 31, 391
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 1 cut(s) 432
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 453, 486
BssMI GATC 2 cut(s) 117, 249
Bst4CI ACNGT 3 cut(s) 94, 232, 301
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 453
BstFNI CGCG 1 cut(s) 65
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 2 cut(s) 120, 252
BstMAI GTCTC 3 cut(s) 92, 311, 434
BstMBI GATC 2 cut(s) 117, 249
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 466
BstX2I RGATCY 2 cut(s) 117, 249
BstYI RGATCY 2 cut(s) 117, 249
BtgI CCRYGG 1 cut(s) 453
BtgZI GCGATG 1 cut(s) 20
BtsIMutI CAGTG 2 cut(s) 90, 439
Cac8I GCNNGC 1 cut(s) 69
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 175
CviJI RGCY 5 cut(s) 26, 142, 202, 431, 449
CviKI_1 RGCY 5 cut(s) 26, 142, 202, 431, 449
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 119, 251
DpnII GATC 2 cut(s) 117, 249
Eco47I GGWCC 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 434
Fnu4HI GCNGC 2 cut(s) 477, 480
Fsp4HI GCNGC 2 cut(s) 477, 480
FspBI CTAG 1 cut(s) 493
GlaI GCGC 1 cut(s) 66
GluI GCNGC 2 cut(s) 477, 480
HapII CCGG 3 cut(s) 23, 29, 419
HhaI GCGC 1 cut(s) 67
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HindIII AAGCTT 1 cut(s) 447
HinfI GANTC 3 cut(s) 100, 383, 415
HpaII CCGG 3 cut(s) 23, 29, 419
Hpy188I TCNGA 3 cut(s) 46, 247, 373
Hpy188III TCNNGA 3 cut(s) 253, 337, 419
HpyAV CCTTC 2 cut(s) 277, 334
HpyCH4III ACNGT 3 cut(s) 94, 232, 301
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 4 cut(s) 71, 209, 272, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 156
HspAI GCGC 1 cut(s) 65
Kpn2I TCCGGA 1 cut(s) 418
Kzo9I GATC 2 cut(s) 117, 249
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 8 cut(s) 36, 42, 81, 100, 350, 411, 432, 445
Lsp1109I GCAGC 1 cut(s) 466
MaeI CTAG 1 cut(s) 493
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 235, 400
MalI GATC 2 cut(s) 119, 251
MboI GATC 2 cut(s) 117, 249
MboII GAAGA 6 cut(s) 121, 142, 268, 292, 340, 479
MflI RGATCY 2 cut(s) 117, 249
MlyI GAGTC 3 cut(s) 94, 377, 409
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 6 cut(s) 42, 165, 187, 415, 418, 481
MroI TCCGGA 1 cut(s) 418
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 3 cut(s) 23, 29, 419
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 2 cut(s) 117, 249
NlaIV GGNNCC 4 cut(s) 27, 33, 119, 393
NmuCI GTSAC 1 cut(s) 400
OliI CACNNNNGTG 1 cut(s) 230
PkrI GCNGC 2 cut(s) 478, 481
PleI GAGTC 3 cut(s) 94, 377, 409
PpsI GAGTC 3 cut(s) 94, 377, 409
PspN4I GGNNCC 4 cut(s) 27, 33, 119, 393
PspPI GGNCC 1 cut(s) 334
PsuI RGATCY 2 cut(s) 117, 249
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 2 cut(s) 477, 480
Sau3AI GATC 2 cut(s) 117, 249
Sau96I GGNCC 1 cut(s) 334
SchI GAGTC 3 cut(s) 94, 377, 409
SetI ASST 8 cut(s) 159, 176, 198, 204, 288, 400, 451, 492
SinI GGWCC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 230
SsiI CCGC 2 cut(s) 87, 477
SspMI CTAG 1 cut(s) 493
TaaI ACNGT 3 cut(s) 94, 232, 301
TaiI ACGT 1 cut(s) 159
TaqI TCGA 2 cut(s) 198, 296
TauI GCSGC 1 cut(s) 479
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 2 cut(s) 97, 439
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 1 cut(s) 479
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 1 cut(s) 323
TspGWI ACGGA 2 cut(s) 442, 458
TspRI CASTG 2 cut(s) 97, 439
VpaK11BI GGWCC 1 cut(s) 334
XspI CTAG 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.