Rmu_sc0000078.1_g000053

At2g34160-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000078.1
OG0016514
Physical Location & Seq
Forward (+)
245137 .. 246493
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000078.1_g000053.1.cds

Sequence Viewer

Length: 558 bp
atggcgtcggtgcaggtagcgagggttgcagccgtaccaccaccgcaggcccaggctcaggctcagccccaggcccaggtccagacccagactcagagccagacccaggccataggagagcagcagaagaagaacagaattcaagtttccaataccaagaagccgctcttcttctacgtcaatcttgctaagtccatgttttctggatctacatttcgtctttacgtagtttttcctttgatgcagaggtatatagagcaacacaatgaggttgagctctctgcattgggaatggtcttgcttatatcctgtacttgtttttcaacagcaatcactactgttgtcactattgctgagattttgaagaacaatggactggctattgaaaagaaggtgtctacatctacagttggcatgagggatgacaacaagggtcgtctggtgcagaaggctaagattgagattgtgctggggaagtctgaaaagtttgactctataatgagtgctgccgcagctgctcaagctgctcaggagccagctgctgagggcaagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

185

Amino Acids

20.09

Weight (kDa)

9.63

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04620
fragaria_vesca FvH4_6g02590
malus_domestica MD04G1226900.v1.1 MD12G1243900.v1.1
prunus_persica Prupe.6G345600_v2.0.a1
pyrus_communis pycom04g20020
rosa_chinensis RchiOBHm_Chr3g0450501
rosa_laevigata RLG00000025726
rosa_multiflora Rmu_sc0000078.1_g000053
rosa_roxburghii Rroxscaffold_6G00428180
rosa_rugosa Rorug02G0628100
rosa_samantha Rh3BG029300 Rh3DG029000
rosa_wichuraiana Rw3G002220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 166
AccI GTMKAC 1 cut(s) 398
AciI CCGC 3 cut(s) 44, 164, 510
AclWI GGATC 1 cut(s) 214
AcsI RAATTY 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 36, 313
AfiI CCNNNNNNNGG 3 cut(s) 58, 76, 106
AgsI TTSAA 4 cut(s) 143, 324, 364, 386
AjnI CCWGG 4 cut(s) 51, 69, 75, 105
AluBI AGCT 4 cut(s) 277, 515, 524, 539
AluI AGCT 4 cut(s) 277, 515, 524, 539
Alw21I GWGCWC 1 cut(s) 279
AlwI GGATC 1 cut(s) 214
AlwNI CAGNNNCTG 1 cut(s) 542
AoxI GGCC 3 cut(s) 48, 72, 108
ApeKI GCWGC 7 cut(s) 29, 121, 506, 512, 515, 524, 539
ApoI RAATTY 1 cut(s) 138
AspS9I GGNCC 3 cut(s) 49, 73, 79
AvaII GGWCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 543
BbvI GCAGC 7 cut(s) 41, 133, 493, 502, 511, 524, 526
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 4 cut(s) 53, 71, 77, 107
BfmI CTRYAG 1 cut(s) 405
BfuAI ACCTGC 1 cut(s) 4
BisI GCNGC 9 cut(s) 30, 122, 164, 507, 510, 513, 516, 525, 540
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 9 cut(s) 31, 123, 165, 508, 511, 514, 517, 526, 541
Bme1390I CCNGG 4 cut(s) 53, 71, 77, 107
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 3 cut(s) 49, 73, 79
BmiI GGNNCC 1 cut(s) 534
BmrFI CCNGG 4 cut(s) 53, 71, 77, 107
BmsI GCATC 1 cut(s) 231
Bpu10I CCTNAGC 3 cut(s) 57, 528, 543
Bpu1102I GCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 504
BsaAI YACGTR 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 51, 69, 75, 105
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 76, 106
Bse1I ACTGG 1 cut(s) 381
BseBI CCWGG 4 cut(s) 53, 71, 77, 107
BseDI CCNNGG 4 cut(s) 51, 69, 75, 105
BseGI GGATG 1 cut(s) 427
BseLI CCNNNNNNNGG 3 cut(s) 58, 76, 106
BseMII CTCAG 6 cut(s) 71, 77, 107, 345, 534, 542
BseNI ACTGG 1 cut(s) 381
BseXI GCAGC 7 cut(s) 41, 133, 493, 502, 511, 524, 526
BseYI CCCAGC 1 cut(s) 469
BsgI GTGCAG 2 cut(s) 32, 464
BshFI GGCC 3 cut(s) 50, 74, 110
BsiHKAI GWGCWC 1 cut(s) 279
BslI CCNNNNNNNGG 3 cut(s) 58, 76, 106
BsnI GGCC 3 cut(s) 50, 74, 110
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 1 cut(s) 206
Bsp1720I GCTNAGC 1 cut(s) 63
BspACI CCGC 3 cut(s) 44, 164, 510
BspANI GGCC 3 cut(s) 50, 74, 110
BspCNI CTCAG 6 cut(s) 70, 76, 106, 346, 535, 541
BspLI GGNNCC 1 cut(s) 534
BspMI ACCTGC 1 cut(s) 4
BspPI GGATC 1 cut(s) 214
BspQI GCTCTTC 1 cut(s) 173
BsrBI CCGCTC 1 cut(s) 166
BsrI ACTGG 1 cut(s) 381
BssECI CCNNGG 4 cut(s) 51, 69, 75, 105
BssMI GATC 1 cut(s) 206
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 4 cut(s) 53, 71, 77, 107
Bst4CI ACNGT 2 cut(s) 340, 409
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 2 cut(s) 48, 537
BstDEI CTNAG 8 cut(s) 57, 63, 93, 189, 354, 453, 528, 543
BstF5I GGATG 1 cut(s) 427
BstKTI GATC 1 cut(s) 209
BstMBI GATC 1 cut(s) 206
BstMWI GCNNNNNNNGC 5 cut(s) 26, 512, 515, 521, 524
BstNI CCWGG 4 cut(s) 53, 71, 77, 107
BstSCI CCNGG 4 cut(s) 51, 69, 75, 105
BstSFI CTRYAG 1 cut(s) 405
BstSNI TACGTA 1 cut(s) 226
BstV1I GCAGC 7 cut(s) 41, 133, 493, 502, 511, 524, 526
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuRI GGCC 3 cut(s) 50, 74, 110
BtsCI GGATG 1 cut(s) 427
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 2 cut(s) 48, 537
CaiI CAGNNNCTG 1 cut(s) 542
Cfr13I GGNCC 3 cut(s) 49, 73, 79
Csp6I GTAC 2 cut(s) 35, 312
CviAII CATG 2 cut(s) 196, 415
CviQI GTAC 2 cut(s) 35, 312
DdeI CTNAG 8 cut(s) 57, 63, 93, 189, 354, 453, 528, 543
DpnI GATC 1 cut(s) 208
DpnII GATC 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 277
Eco105I TACGTA 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 277
EcoICRI GAGCTC 1 cut(s) 277
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 4 cut(s) 51, 69, 75, 105
EcoT38I GRGCYC 1 cut(s) 279
FaeI CATG 2 cut(s) 199, 418
FaiI YATR 7 cut(s) 113, 197, 252, 254, 305, 416, 497
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 2 cut(s) 195, 414
FblI GTMKAC 1 cut(s) 398
Fnu4HI GCNGC 9 cut(s) 30, 122, 164, 507, 510, 513, 516, 525, 540
FokI GGATG 1 cut(s) 434
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 9 cut(s) 30, 122, 164, 507, 510, 513, 516, 525, 540
GluI GCNGC 9 cut(s) 30, 122, 164, 507, 510, 513, 516, 525, 540
GsaI CCCAGC 1 cut(s) 473
HaeIII GGCC 3 cut(s) 50, 74, 110
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 199, 418
HinfI GANTC 2 cut(s) 91, 491
Hpy166II GTNNAC 1 cut(s) 399
Hpy188I TCNGA 2 cut(s) 96, 481
Hpy188III TCNNGA 3 cut(s) 82, 204, 530
Hpy8I GTNNAC 1 cut(s) 399
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 385, 442
HpyCH4III ACNGT 2 cut(s) 340, 409
HpyCH4IV ACGT 2 cut(s) 177, 225
HpyCH4V TGCA 5 cut(s) 13, 29, 244, 284, 445
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 512, 515, 521, 524
HpyF3I CTNAG 8 cut(s) 57, 63, 93, 189, 354, 453, 528, 543
HpySE526I ACGT 2 cut(s) 177, 225
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 199, 418
Kzo9I GATC 1 cut(s) 206
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 1 cut(s) 532
Lsp1109I GCAGC 7 cut(s) 41, 133, 493, 502, 511, 524, 526
LweI GCATC 1 cut(s) 231
MaeII ACGT 2 cut(s) 177, 225
MaeIII GTNAC 1 cut(s) 343
MalI GATC 1 cut(s) 208
MbiI CCGCTC 1 cut(s) 166
MboI GATC 1 cut(s) 206
MboII GAAGA 5 cut(s) 139, 142, 160, 163, 376
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 1 cut(s) 138
MlyI GAGTC 2 cut(s) 85, 485
MnlI CCTC 5 cut(s) 15, 240, 262, 411, 538
MspA1I CMGCKG 2 cut(s) 515, 539
MspR9I CCNGG 4 cut(s) 53, 71, 77, 107
MvaI CCWGG 4 cut(s) 53, 71, 77, 107
MwoI GCNNNNNNNGC 5 cut(s) 26, 512, 515, 521, 524
NdeII GATC 1 cut(s) 206
NlaIII CATG 2 cut(s) 199, 418
NlaIV GGNNCC 1 cut(s) 534
NmuCI GTSAC 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 173
PkrI GCNGC 9 cut(s) 31, 123, 165, 508, 511, 514, 517, 526, 541
PleI GAGTC 2 cut(s) 85, 485
PpsI GAGTC 2 cut(s) 85, 485
Ppu21I YACGTR 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 279
Psp6I CCWGG 4 cut(s) 51, 69, 75, 105
PspFI CCCAGC 1 cut(s) 469
PspGI CCWGG 4 cut(s) 51, 69, 75, 105
PspN4I GGNNCC 1 cut(s) 534
PspPI GGNCC 3 cut(s) 49, 73, 79
PstNI CAGNNNCTG 1 cut(s) 542
PsuI RGATCY 1 cut(s) 206
PvuII CAGCTG 2 cut(s) 515, 539
RsaI GTAC 2 cut(s) 36, 313
RsaNI GTAC 2 cut(s) 35, 312
SacI GAGCTC 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 173
SatI GCNGC 9 cut(s) 30, 122, 164, 507, 510, 513, 516, 525, 540
Sau3AI GATC 1 cut(s) 206
Sau96I GGNCC 3 cut(s) 49, 73, 79
SchI GAGTC 2 cut(s) 85, 485
ScrFI CCNGG 4 cut(s) 53, 71, 77, 107
SduI GDGCHC 1 cut(s) 279
SfaNI GCATC 1 cut(s) 231
SfcI CTRYAG 1 cut(s) 405
SinI GGWCC 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 519
SmoI CTYRAG 1 cut(s) 519
SnaBI TACGTA 1 cut(s) 226
Sse9I AATT 1 cut(s) 138
SsiI CCGC 3 cut(s) 44, 164, 510
SstI GAGCTC 1 cut(s) 279
StyD4I CCNGG 4 cut(s) 51, 69, 75, 105
TaaI ACNGT 2 cut(s) 340, 409
TaiI ACGT 2 cut(s) 180, 228
TasI AATT 1 cut(s) 138
TatI WGTACW 1 cut(s) 311
TauI GCSGC 2 cut(s) 166, 512
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 7 cut(s) 29, 121, 506, 512, 515, 524, 539
Tsp45I GTSAC 1 cut(s) 343
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.