Rw3G002220

At2g34160-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0016514
Physical Location & Seq
Reverse (-)
1957989 .. 1959742
1754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002220.1

Sequence Viewer

Length: 483 bp
ATGGCGTCGGTGCAGGTAGCGAGGGTTGCAGCCGTACCACCACCGCAGGCCCAGGCTCAGGCTCAGCCCCAGGCCCAGGTCCAGACCCAGACTCAGAGCCAGACCCAGAGCCAGACCCAGGCCATAGGAGAGCAGCAGAAGAAGAACAGAATTCAAGTTTCCAATACCAAGAAGCCGCTCTTCTTCTACGTCAATCTTGCTAAGAGGTATATAGAGCAACACAATGAGGTTGAGCTCTCTGCATTGGGAATGGCAATCACTACTGTTGTCACTATTGCTGAGATTTTGAAGAACAATGGACTGGCTATTGAAAAGAAGGTGTCTACATCTACAGTTGGCATGAGGGATGACAACAAGGGTCGTCTGGTGCAGAAGGCTAAGATTGAGATTGTGCTGGGGAAGTCTGAAAAGTTTGACTCTATAATGAGTGCTGCCGCAGCTGCTCAAGCTGCTCAGGAGCCAGCTGCTGAGGGCAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

160

Amino Acids

17.27

Weight (kDa)

9.73

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 49 - 110 2.3e-13 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04620
fragaria_vesca FvH4_6g02590
malus_domestica MD04G1226900.v1.1 MD12G1243900.v1.1
prunus_persica Prupe.6G345600_v2.0.a1
pyrus_communis pycom04g20020
rosa_chinensis RchiOBHm_Chr3g0450501
rosa_laevigata RLG00000025726
rosa_multiflora Rmu_sc0000078.1_g000053
rosa_roxburghii Rroxscaffold_6G00428180
rosa_rugosa Rorug02G0628100
rosa_samantha Rh3BG029300 Rh3DG029000
rosa_wichuraiana Rw3G002220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 178
AccI GTMKAC 1 cut(s) 323
AciI CCGC 3 cut(s) 44, 176, 435
AcsI RAATTY 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 3 cut(s) 58, 76, 118
AgsI TTSAA 3 cut(s) 155, 289, 311
AjnI CCWGG 4 cut(s) 51, 69, 75, 117
AluBI AGCT 4 cut(s) 235, 440, 449, 464
AluI AGCT 4 cut(s) 235, 440, 449, 464
Alw21I GWGCWC 1 cut(s) 237
AlwNI CAGNNNCTG 1 cut(s) 467
AoxI GGCC 3 cut(s) 48, 72, 120
ApeKI GCWGC 7 cut(s) 29, 133, 431, 437, 440, 449, 464
ApoI RAATTY 1 cut(s) 150
AspS9I GGNCC 3 cut(s) 49, 73, 79
AvaII GGWCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 237
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 7 cut(s) 41, 145, 418, 427, 436, 449, 451
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 4 cut(s) 53, 71, 77, 119
BfmI CTRYAG 1 cut(s) 330
BfuAI ACCTGC 1 cut(s) 4
BisI GCNGC 9 cut(s) 30, 134, 176, 432, 435, 438, 441, 450, 465
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 9 cut(s) 31, 135, 177, 433, 436, 439, 442, 451, 466
Bme1390I CCNGG 4 cut(s) 53, 71, 77, 119
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 3 cut(s) 49, 73, 79
BmiI GGNNCC 1 cut(s) 459
BmrFI CCNGG 4 cut(s) 53, 71, 77, 119
Bpu10I CCTNAGC 3 cut(s) 57, 453, 468
Bpu1102I GCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 51, 69, 75, 117
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 76, 118
Bse1I ACTGG 1 cut(s) 306
BseBI CCWGG 4 cut(s) 53, 71, 77, 119
BseDI CCNNGG 4 cut(s) 51, 69, 75, 117
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 3 cut(s) 58, 76, 118
BseMII CTCAG 6 cut(s) 71, 77, 107, 270, 459, 467
BseNI ACTGG 1 cut(s) 306
BseXI GCAGC 7 cut(s) 41, 145, 418, 427, 436, 449, 451
BseYI CCCAGC 1 cut(s) 394
BsgI GTGCAG 2 cut(s) 32, 389
BshFI GGCC 3 cut(s) 50, 74, 122
BsiHKAI GWGCWC 1 cut(s) 237
BslI CCNNNNNNNGG 3 cut(s) 58, 76, 118
BsnI GGCC 3 cut(s) 50, 74, 122
Bsp1286I GDGCHC 1 cut(s) 237
Bsp1720I GCTNAGC 1 cut(s) 63
BspACI CCGC 3 cut(s) 44, 176, 435
BspANI GGCC 3 cut(s) 50, 74, 122
BspCNI CTCAG 6 cut(s) 70, 76, 106, 271, 460, 466
BspLI GGNNCC 1 cut(s) 459
BspMI ACCTGC 1 cut(s) 4
BspQI GCTCTTC 1 cut(s) 185
BsrBI CCGCTC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 4 cut(s) 51, 69, 75, 117
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 4 cut(s) 53, 71, 77, 119
Bst4CI ACNGT 2 cut(s) 265, 334
Bst6I CTCTTC 1 cut(s) 185
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 48, 462
BstDEI CTNAG 8 cut(s) 57, 63, 93, 201, 279, 378, 453, 468
BstF5I GGATG 1 cut(s) 352
BstMWI GCNNNNNNNGC 5 cut(s) 26, 437, 440, 446, 449
BstNI CCWGG 4 cut(s) 53, 71, 77, 119
BstSCI CCNGG 4 cut(s) 51, 69, 75, 117
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 7 cut(s) 41, 145, 418, 427, 436, 449, 451
BsuRI GGCC 3 cut(s) 50, 74, 122
BtsCI GGATG 1 cut(s) 352
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 2 cut(s) 48, 462
CaiI CAGNNNCTG 1 cut(s) 467
Cfr13I GGNCC 3 cut(s) 49, 73, 79
Csp6I GTAC 1 cut(s) 35
CviAII CATG 1 cut(s) 340
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 8 cut(s) 57, 63, 93, 201, 279, 378, 453, 468
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 150
EcoRII CCWGG 4 cut(s) 51, 69, 75, 117
EcoT38I GRGCYC 1 cut(s) 237
FaeI CATG 1 cut(s) 343
FaiI YATR 5 cut(s) 125, 210, 212, 341, 422
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FatI CATG 1 cut(s) 339
FblI GTMKAC 1 cut(s) 323
Fnu4HI GCNGC 9 cut(s) 30, 134, 176, 432, 435, 438, 441, 450, 465
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 9 cut(s) 30, 134, 176, 432, 435, 438, 441, 450, 465
GluI GCNGC 9 cut(s) 30, 134, 176, 432, 435, 438, 441, 450, 465
GsaI CCCAGC 1 cut(s) 398
HaeIII GGCC 3 cut(s) 50, 74, 122
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 343
HinfI GANTC 2 cut(s) 91, 416
Hpy166II GTNNAC 1 cut(s) 324
Hpy188I TCNGA 2 cut(s) 96, 406
Hpy188III TCNNGA 2 cut(s) 82, 455
Hpy8I GTNNAC 1 cut(s) 324
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 310, 367
HpyCH4III ACNGT 2 cut(s) 265, 334
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 4 cut(s) 13, 29, 242, 370
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 437, 440, 446, 449
HpyF3I CTNAG 8 cut(s) 57, 63, 93, 201, 279, 378, 453, 468
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 343
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 1 cut(s) 457
Lsp1109I GCAGC 7 cut(s) 41, 145, 418, 427, 436, 449, 451
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 268
MbiI CCGCTC 1 cut(s) 178
MboII GAAGA 5 cut(s) 151, 154, 172, 175, 301
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 1 cut(s) 150
MlyI GAGTC 2 cut(s) 85, 410
MnlI CCTC 5 cut(s) 15, 198, 220, 336, 463
MspA1I CMGCKG 2 cut(s) 440, 464
MspR9I CCNGG 4 cut(s) 53, 71, 77, 119
MvaI CCWGG 4 cut(s) 53, 71, 77, 119
MwoI GCNNNNNNNGC 5 cut(s) 26, 437, 440, 446, 449
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 1 cut(s) 459
NmuCI GTSAC 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 185
PkrI GCNGC 9 cut(s) 31, 135, 177, 433, 436, 439, 442, 451, 466
PleI GAGTC 2 cut(s) 85, 410
PpsI GAGTC 2 cut(s) 85, 410
Psp124BI GAGCTC 1 cut(s) 237
Psp6I CCWGG 4 cut(s) 51, 69, 75, 117
PspFI CCCAGC 1 cut(s) 394
PspGI CCWGG 4 cut(s) 51, 69, 75, 117
PspN4I GGNNCC 1 cut(s) 459
PspPI GGNCC 3 cut(s) 49, 73, 79
PstNI CAGNNNCTG 1 cut(s) 467
PvuII CAGCTG 2 cut(s) 440, 464
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SacI GAGCTC 1 cut(s) 237
SapI GCTCTTC 1 cut(s) 185
SatI GCNGC 9 cut(s) 30, 134, 176, 432, 435, 438, 441, 450, 465
Sau96I GGNCC 3 cut(s) 49, 73, 79
SchI GAGTC 2 cut(s) 85, 410
ScrFI CCNGG 4 cut(s) 53, 71, 77, 119
SduI GDGCHC 1 cut(s) 237
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 444
SmoI CTYRAG 1 cut(s) 444
Sse9I AATT 1 cut(s) 150
SsiI CCGC 3 cut(s) 44, 176, 435
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 4 cut(s) 51, 69, 75, 117
TaaI ACNGT 2 cut(s) 265, 334
TaiI ACGT 1 cut(s) 192
TasI AATT 1 cut(s) 150
TauI GCSGC 2 cut(s) 178, 437
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 7 cut(s) 29, 133, 431, 437, 440, 449, 464
Tsp45I GTSAC 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 150
XmiI GTMKAC 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.