Rroxscaffold_6G00428180

At2g34160-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016514
Physical Location & Seq
Reverse (-)
48664488 .. 48666640
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428180.1

Sequence Viewer

Length: 486 bp
ATGGCGTCGGTTCAGGTAGCAAGGGTTGCAGCCGTACCACCACCGCAGGCACAGGCTCAGGCTCAGCCCCAGGTCCAGACCCAGACTCAGACCCAGACCCAGAGCCAGACCCAGGCAGCCCAGGCCGCAGGAGAGCAGCAGAAGAAGAACAGAATTCAAGTTTCCAATACCAAGAAACCGCTCTTCTTCTACGTCAATCTTGCTAAGAGGTATATAGAGCAGCACAATGAGGTTGAGCTCTCTGCATTGGGAATGGCAATCACTACTGTTGTCACTATTGCTGAGATTTTGAAGAACAATGGACTGGCTATTGAAAAGAAGGTGTGTACATCTACGGTTGGCATGAGGGATGACAACAAGGGTCGTCTGGTGCAGAAGGCTAAGATTGAGATTGTGCTGGGGAAGTCTGAAAAGTTTGACTCTATAATGAGTGCTGCCGCAGCTGCTCAAGCTGCTCAGGAGCCAGCTGCTGAGGGCAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

161

Amino Acids

17.33

Weight (kDa)

9.64

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 50 - 112 1.7e-13 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04620
fragaria_vesca FvH4_6g02590
malus_domestica MD04G1226900.v1.1 MD12G1243900.v1.1
prunus_persica Prupe.6G345600_v2.0.a1
pyrus_communis pycom04g20020
rosa_chinensis RchiOBHm_Chr3g0450501
rosa_laevigata RLG00000025726
rosa_multiflora Rmu_sc0000078.1_g000053
rosa_roxburghii Rroxscaffold_6G00428180
rosa_rugosa Rorug02G0628100
rosa_samantha Rh3BG029300 Rh3DG029000
rosa_wichuraiana Rw3G002220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 181
AciI CCGC 4 cut(s) 44, 126, 179, 438
AcsI RAATTY 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 36, 328
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 3 cut(s) 158, 292, 314
AjnI CCWGG 3 cut(s) 69, 111, 120
AluBI AGCT 4 cut(s) 238, 443, 452, 467
AluI AGCT 4 cut(s) 238, 443, 452, 467
Alw21I GWGCWC 1 cut(s) 240
AlwNI CAGNNNCTG 1 cut(s) 470
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 9 cut(s) 29, 116, 136, 220, 434, 440, 443, 452, 467
ApoI RAATTY 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 73
AvaII GGWCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 240
BbvCI CCTCAGC 1 cut(s) 471
BbvI GCAGC 9 cut(s) 41, 128, 148, 232, 421, 430, 439, 452, 454
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 3 cut(s) 71, 113, 122
BlpI GCTNAGC 1 cut(s) 63
Bme1390I CCNGG 3 cut(s) 71, 113, 122
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 3 cut(s) 71, 113, 122
Bpu10I CCTNAGC 3 cut(s) 57, 456, 471
Bpu1102I GCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 432
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 69, 111, 120
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 309
BseBI CCWGG 3 cut(s) 71, 113, 122
BseDI CCNNGG 3 cut(s) 69, 111, 120
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 6 cut(s) 71, 77, 101, 273, 462, 470
BseNI ACTGG 1 cut(s) 309
BseXI GCAGC 9 cut(s) 41, 128, 148, 232, 421, 430, 439, 452, 454
BseYI CCCAGC 1 cut(s) 397
BsgI GTGCAG 1 cut(s) 392
BshFI GGCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 112
BsnI GGCC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 240
Bsp1407I TGTACA 1 cut(s) 326
Bsp1720I GCTNAGC 1 cut(s) 63
BspACI CCGC 4 cut(s) 44, 126, 179, 438
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 6 cut(s) 70, 76, 100, 274, 463, 469
BspLI GGNNCC 1 cut(s) 462
BspQI GCTCTTC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 181
BsrGI TGTACA 1 cut(s) 326
BsrI ACTGG 1 cut(s) 309
BssECI CCNNGG 3 cut(s) 69, 111, 120
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 3 cut(s) 71, 113, 122
Bst4CI ACNGT 2 cut(s) 268, 337
Bst6I CTCTTC 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 26
BstAUI TGTACA 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 48, 465
BstDEI CTNAG 8 cut(s) 57, 63, 87, 204, 282, 381, 456, 471
BstF5I GGATG 1 cut(s) 355
BstMWI GCNNNNNNNGC 7 cut(s) 26, 122, 125, 440, 443, 449, 452
BstNI CCWGG 3 cut(s) 71, 113, 122
BstSCI CCNGG 3 cut(s) 69, 111, 120
BstV1I GCAGC 9 cut(s) 41, 128, 148, 232, 421, 430, 439, 452, 454
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 355
Cac8I GCNNGC 2 cut(s) 48, 465
CaiI CAGNNNCTG 1 cut(s) 470
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 2 cut(s) 35, 327
CviAII CATG 1 cut(s) 343
CviQI GTAC 2 cut(s) 35, 327
DdeI CTNAG 8 cut(s) 57, 63, 87, 204, 282, 381, 456, 471
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 238
EcoICRI GAGCTC 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 153
EcoRII CCWGG 3 cut(s) 69, 111, 120
EcoT38I GRGCYC 1 cut(s) 240
FaeI CATG 1 cut(s) 346
FaiI YATR 4 cut(s) 213, 215, 344, 425
FatI CATG 1 cut(s) 342
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 1 cut(s) 240
GsaI CCCAGC 1 cut(s) 401
HaeIII GGCC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 346
HinfI GANTC 2 cut(s) 85, 419
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 2 cut(s) 90, 409
Hpy188III TCNNGA 2 cut(s) 76, 458
Hpy8I GTNNAC 1 cut(s) 327
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 313, 370
HpyCH4III ACNGT 2 cut(s) 268, 337
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 3 cut(s) 29, 245, 373
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 122, 125, 440, 443, 449, 452
HpyF3I CTNAG 8 cut(s) 57, 63, 87, 204, 282, 381, 456, 471
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 346
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 1 cut(s) 460
Lsp1109I GCAGC 9 cut(s) 41, 128, 148, 232, 421, 430, 439, 452, 454
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 271
MbiI CCGCTC 1 cut(s) 181
MboII GAAGA 5 cut(s) 154, 157, 175, 178, 304
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 1 cut(s) 153
MlyI GAGTC 2 cut(s) 79, 413
MnlI CCTC 4 cut(s) 201, 223, 339, 466
MspA1I CMGCKG 2 cut(s) 443, 467
MspR9I CCNGG 3 cut(s) 71, 113, 122
MvaI CCWGG 3 cut(s) 71, 113, 122
MwoI GCNNNNNNNGC 7 cut(s) 26, 122, 125, 440, 443, 449, 452
NlaIII CATG 1 cut(s) 346
NlaIV GGNNCC 1 cut(s) 462
NmuCI GTSAC 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 188
PleI GAGTC 2 cut(s) 79, 413
PpsI GAGTC 2 cut(s) 79, 413
Psp124BI GAGCTC 1 cut(s) 240
Psp6I CCWGG 3 cut(s) 69, 111, 120
PspFI CCCAGC 1 cut(s) 397
PspGI CCWGG 3 cut(s) 69, 111, 120
PspN4I GGNNCC 1 cut(s) 462
PspPI GGNCC 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 470
PvuII CAGCTG 2 cut(s) 443, 467
RsaI GTAC 2 cut(s) 36, 328
RsaNI GTAC 2 cut(s) 35, 327
SacI GAGCTC 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 188
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 2 cut(s) 79, 413
ScrFI CCNGG 3 cut(s) 71, 113, 122
SduI GDGCHC 1 cut(s) 240
SinI GGWCC 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 447
SmoI CTYRAG 1 cut(s) 447
Sse9I AATT 1 cut(s) 153
SsiI CCGC 4 cut(s) 44, 126, 179, 438
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 3 cut(s) 69, 111, 120
TaaI ACNGT 2 cut(s) 268, 337
TaiI ACGT 1 cut(s) 195
TasI AATT 1 cut(s) 153
TatI WGTACW 1 cut(s) 326
TauI GCSGC 2 cut(s) 128, 440
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 9 cut(s) 29, 116, 136, 220, 434, 440, 443, 452, 467
Tsp45I GTSAC 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 73
XapI RAATTY 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.