Rh3BG029300

At2g34160-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0016514
Physical Location & Seq
Reverse (-)
1939229 .. 1942763
3535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG029300.1

Sequence Viewer

Length: 564 bp
ATGGCGTCGGTTCAGGTAGCGAGGGTTGCAGCCGTACCACCACCGCAGGCCCAGGCTCAGTCTCAGGCTCAGGCTCAGCCCCAGGCCCAGGTCCAGACCCAGACTCAGGCCGCCCAGGCCATAGGAGAGCAGCAGAAGAAGAACAGAATTCAAGTTTCCAATACCAAGAAGCCGCTCTTCTTCTACGTCAATCTTGCTAAGAGGTATATAGAGCAGCACAATGAGGTTGAGCTCTCTGCATTGGGAATGGCAATCACTACTGTTGTCACTATTGCTGAGATTTTGAAGAACAATGGACTGGCTATTGAAAAGAAGGTGTCTACATCTACGGTTGGCATGAGGGACGACAACAAGGGTCGTCTGGTGCAGAAGGCTAAGGTATGTTTTTTAAGTGAAGGTGGATTGAACATTGCATATATATTCCATTTGACTTCTGATATCTCCATTTCTTTTGGTTTTCAGATTGAGATTGTGCTGGGGAAGTCTGAAAAGTTTGACTCTATAATGAGTGCTGCCGCAGCTGCTCAAGCTGCTCAGGAGCCAGCTGCTGAGGGCAATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

187

Amino Acids

20.11

Weight (kDa)

9.21

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 48 - 109 3.2e-13 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04620
fragaria_vesca FvH4_6g02590
malus_domestica MD04G1226900.v1.1 MD12G1243900.v1.1
prunus_persica Prupe.6G345600_v2.0.a1
pyrus_communis pycom04g20020
rosa_chinensis RchiOBHm_Chr3g0450501
rosa_laevigata RLG00000025726
rosa_multiflora Rmu_sc0000078.1_g000053
rosa_roxburghii Rroxscaffold_6G00428180
rosa_rugosa Rorug02G0628100
rosa_samantha Rh3BG029300 Rh3DG029000
rosa_wichuraiana Rw3G002220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 175
AccI GTMKAC 1 cut(s) 320
AciI CCGC 4 cut(s) 44, 111, 173, 516
AcsI RAATTY 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 2 cut(s) 88, 106
AgsI TTSAA 4 cut(s) 152, 286, 308, 406
AjnI CCWGG 4 cut(s) 51, 81, 87, 114
AluBI AGCT 4 cut(s) 232, 521, 530, 545
AluI AGCT 4 cut(s) 232, 521, 530, 545
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 66
AlwNI CAGNNNCTG 1 cut(s) 548
AoxI GGCC 4 cut(s) 48, 84, 108, 117
ApeKI GCWGC 8 cut(s) 29, 130, 214, 512, 518, 521, 530, 545
ApoI RAATTY 1 cut(s) 147
AspS9I GGNCC 3 cut(s) 49, 85, 91
AvaII GGWCC 1 cut(s) 91
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 234
BbvCI CCTCAGC 1 cut(s) 549
BbvI GCAGC 8 cut(s) 41, 142, 226, 499, 508, 517, 530, 532
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 4 cut(s) 53, 83, 89, 116
BcoDI GTCTC 1 cut(s) 66
BglI GCCNNNNNGGC 1 cut(s) 116
BlpI GCTNAGC 1 cut(s) 75
Bme1390I CCNGG 4 cut(s) 53, 83, 89, 116
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 3 cut(s) 49, 85, 91
BmiI GGNNCC 1 cut(s) 540
BmrFI CCNGG 4 cut(s) 53, 83, 89, 116
Bpu10I CCTNAGC 4 cut(s) 69, 375, 534, 549
Bpu1102I GCTNAGC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 510
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 51, 81, 87, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 106
Bse1I ACTGG 1 cut(s) 303
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 4 cut(s) 53, 83, 89, 116
BseDI CCNNGG 4 cut(s) 51, 81, 87, 114
BseLI CCNNNNNNNGG 2 cut(s) 88, 106
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 8 cut(s) 71, 77, 83, 89, 119, 267, 540, 548
BseNI ACTGG 1 cut(s) 303
BseXI GCAGC 8 cut(s) 41, 142, 226, 499, 508, 517, 530, 532
BseYI CCCAGC 1 cut(s) 475
BsgI GTGCAG 1 cut(s) 386
BshFI GGCC 4 cut(s) 50, 86, 110, 119
BsiHKAI GWGCWC 1 cut(s) 234
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 2 cut(s) 88, 106
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 4 cut(s) 50, 86, 110, 119
Bsp1286I GDGCHC 1 cut(s) 234
Bsp1720I GCTNAGC 1 cut(s) 75
BspACI CCGC 4 cut(s) 44, 111, 173, 516
BspANI GGCC 4 cut(s) 50, 86, 110, 119
BspCNI CTCAG 8 cut(s) 70, 76, 82, 88, 118, 268, 541, 547
BspLI GGNNCC 1 cut(s) 540
BspQI GCTCTTC 1 cut(s) 182
BsrBI CCGCTC 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 4 cut(s) 51, 81, 87, 114
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 4 cut(s) 53, 83, 89, 116
Bst4CI ACNGT 2 cut(s) 262, 331
Bst6I CTCTTC 1 cut(s) 182
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 48, 543
BstMAI GTCTC 1 cut(s) 66
BstMWI GCNNNNNNNGC 6 cut(s) 26, 116, 518, 521, 527, 530
BstNI CCWGG 4 cut(s) 53, 83, 89, 116
BstSCI CCNGG 4 cut(s) 51, 81, 87, 114
BstV1I GCAGC 8 cut(s) 41, 142, 226, 499, 508, 517, 530, 532
BsuRI GGCC 4 cut(s) 50, 86, 110, 119
Cac8I GCNNGC 2 cut(s) 48, 543
CaiI CAGNNNCTG 1 cut(s) 548
Cfr13I GGNCC 3 cut(s) 49, 85, 91
Csp6I GTAC 1 cut(s) 35
CviAII CATG 1 cut(s) 337
CviQI GTAC 1 cut(s) 35
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 234
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 147
EcoRII CCWGG 4 cut(s) 51, 81, 87, 114
EcoRV GATATC 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 234
FaeI CATG 1 cut(s) 340
FaiI YATR 9 cut(s) 122, 207, 209, 338, 382, 415, 417, 419, 503
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 1 cut(s) 356
FatI CATG 1 cut(s) 336
FblI GTMKAC 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 234
GsaI CCCAGC 1 cut(s) 479
HaeIII GGCC 4 cut(s) 50, 86, 110, 119
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 340
HinfI GANTC 2 cut(s) 103, 497
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 3 cut(s) 436, 462, 487
Hpy188III TCNNGA 2 cut(s) 94, 536
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 307, 364, 389
HpyCH4III ACNGT 2 cut(s) 262, 331
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 4 cut(s) 29, 239, 367, 413
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 116, 518, 521, 527, 530
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 340
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 1 cut(s) 538
Lsp1109I GCAGC 8 cut(s) 41, 142, 226, 499, 508, 517, 530, 532
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 265
MbiI CCGCTC 1 cut(s) 175
MboII GAAGA 5 cut(s) 148, 151, 169, 172, 298
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 1 cut(s) 147
MlyI GAGTC 2 cut(s) 97, 491
MnlI CCTC 5 cut(s) 15, 195, 217, 333, 544
MseI TTAA 1 cut(s) 389
MspA1I CMGCKG 2 cut(s) 521, 545
MspR9I CCNGG 4 cut(s) 53, 83, 89, 116
MvaI CCWGG 4 cut(s) 53, 83, 89, 116
MwoI GCNNNNNNNGC 6 cut(s) 26, 116, 518, 521, 527, 530
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 1 cut(s) 540
NmuCI GTSAC 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 182
PleI GAGTC 2 cut(s) 97, 491
PpsI GAGTC 2 cut(s) 97, 491
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 4 cut(s) 51, 81, 87, 114
PspFI CCCAGC 1 cut(s) 475
PspGI CCWGG 4 cut(s) 51, 81, 87, 114
PspN4I GGNNCC 1 cut(s) 540
PspPI GGNCC 3 cut(s) 49, 85, 91
PstNI CAGNNNCTG 1 cut(s) 548
PvuII CAGCTG 2 cut(s) 521, 545
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SacI GAGCTC 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 389
Sau96I GGNCC 3 cut(s) 49, 85, 91
SchI GAGTC 2 cut(s) 97, 491
ScrFI CCNGG 4 cut(s) 53, 83, 89, 116
SduI GDGCHC 1 cut(s) 234
SfiI GGCCNNNNNGGCC 1 cut(s) 116
SinI GGWCC 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 1 cut(s) 147
SsiI CCGC 4 cut(s) 44, 111, 173, 516
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 4 cut(s) 51, 81, 87, 114
TaaI ACNGT 2 cut(s) 262, 331
TaiI ACGT 1 cut(s) 189
TasI AATT 1 cut(s) 147
TauI GCSGC 3 cut(s) 113, 175, 518
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 8 cut(s) 29, 130, 214, 512, 518, 521, 530, 545
Tsp45I GTSAC 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.