FvH4_6g02590

At2g34160-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016514
Physical Location & Seq
Reverse (-)
1492701 .. 1494616
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02590.t1

Sequence Viewer

Length: 474 bp
ATGGCGTCGGTTCAGGTAGCGCGGGTTGCAGCCGTACCACCACCCCAGGCGCAGGCTCAGCCTCAGCCTCAAGCGCAGGTCCAGTCCCAGGGCCAGCCTCAGTCACAGAACCAGGCCGTAGGAGAACAGAAGAAGAACAGAATTCAAGTTTCCAATACCAAGAAGCCGCTCTTCTTCTATGTTAATCTTGCTAAGAGGTATTTAGAGCAGCACAATGAGGTTGAGCTCTCTGCATTGGGAATGGCAATCACTACAGTTGTCACTATTGCTGAGATTTTGAAGAACAATGGACTGGCTATTGAAAAGAAAGTGTCAACATCTACGGTTGGCATGAGGGACGAGAACAAGGGTCGTCTGGTGCAGAAGGCTAAGATTGAGATTGTGTTAGGGAAGTCTGAAAAGTTTGATGAAATAATGAGTGCTGCAGCAGCTGCTCAAGCTGCTCAGGAGCCAGCTGCTGAGGGCAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

158

Amino Acids

16.95

Weight (kDa)

9.62

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 46 - 107 3.5e-14 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04620
fragaria_vesca FvH4_6g02590
malus_domestica MD04G1226900.v1.1 MD12G1243900.v1.1
prunus_persica Prupe.6G345600_v2.0.a1
pyrus_communis pycom04g20020
rosa_chinensis RchiOBHm_Chr3g0450501
rosa_laevigata RLG00000025726
rosa_multiflora Rmu_sc0000078.1_g000053
rosa_roxburghii Rroxscaffold_6G00428180
rosa_rugosa Rorug02G0628100
rosa_samantha Rh3BG029300 Rh3DG029000
rosa_wichuraiana Rw3G002220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 67
AccBSI CCGCTC 1 cut(s) 169
AccII CGCG 1 cut(s) 22
AciI CCGC 2 cut(s) 22, 167
AcsI RAATTY 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 2 cut(s) 52, 88
AgsI TTSAA 3 cut(s) 146, 280, 302
AjnI CCWGG 3 cut(s) 45, 87, 111
AluBI AGCT 4 cut(s) 226, 431, 440, 455
AluI AGCT 4 cut(s) 226, 431, 440, 455
Alw21I GWGCWC 1 cut(s) 228
AlwNI CAGNNNCTG 2 cut(s) 431, 458
AoxI GGCC 2 cut(s) 91, 114
ApeKI GCWGC 8 cut(s) 29, 208, 422, 425, 428, 431, 440, 455
ApoI RAATTY 1 cut(s) 141
AspLEI GCGC 3 cut(s) 22, 52, 76
AspS9I GGNCC 2 cut(s) 79, 91
AvaII GGWCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 228
BbvCI CCTCAGC 2 cut(s) 63, 459
BbvI GCAGC 8 cut(s) 41, 220, 409, 418, 427, 437, 440, 442
BceAI ACGGC 2 cut(s) 17, 101
BciT130I CCWGG 3 cut(s) 47, 89, 113
BfmI CTRYAG 2 cut(s) 252, 423
BfuAI ACCTGC 1 cut(s) 67
BisI GCNGC 9 cut(s) 30, 167, 209, 423, 426, 429, 432, 441, 456
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 9 cut(s) 31, 168, 210, 424, 427, 430, 433, 442, 457
Bme1390I CCNGG 3 cut(s) 47, 89, 113
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 2 cut(s) 79, 91
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 3 cut(s) 47, 89, 113
Bpu10I CCTNAGC 3 cut(s) 63, 444, 459
Bpu1102I GCTNAGC 1 cut(s) 57
BpuEI CTTGAG 2 cut(s) 54, 420
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 45, 87, 88
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 88
Bse1I ACTGG 2 cut(s) 82, 297
BseBI CCWGG 3 cut(s) 47, 89, 113
BseDI CCNNGG 3 cut(s) 45, 87, 88
BseLI CCNNNNNNNGG 2 cut(s) 52, 88
BseMII CTCAG 6 cut(s) 71, 77, 113, 261, 450, 458
BseNI ACTGG 2 cut(s) 82, 297
BseXI GCAGC 8 cut(s) 41, 220, 409, 418, 427, 437, 440, 442
BsgI GTGCAG 1 cut(s) 380
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 2 cut(s) 93, 116
BsiHKAI GWGCWC 1 cut(s) 228
BslFI GGGAC 2 cut(s) 70, 350
BslI CCNNNNNNNGG 2 cut(s) 52, 88
BsmFI GGGAC 2 cut(s) 70, 350
BsnI GGCC 2 cut(s) 93, 116
Bsp1286I GDGCHC 1 cut(s) 228
Bsp1720I GCTNAGC 1 cut(s) 57
BspACI CCGC 2 cut(s) 22, 167
BspANI GGCC 2 cut(s) 93, 116
BspCNI CTCAG 6 cut(s) 70, 76, 112, 262, 451, 457
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 450
BspMAI CTGCAG 1 cut(s) 427
BspMI ACCTGC 1 cut(s) 67
BspQI GCTCTTC 1 cut(s) 176
BsrBI CCGCTC 1 cut(s) 169
BsrI ACTGG 2 cut(s) 82, 297
BssECI CCNNGG 3 cut(s) 45, 87, 88
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 3 cut(s) 47, 89, 113
Bst4CI ACNGT 2 cut(s) 256, 325
Bst6I CTCTTC 1 cut(s) 176
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 431
BstC8I GCNNGC 3 cut(s) 54, 95, 453
BstDEI CTNAG 8 cut(s) 57, 63, 99, 192, 270, 369, 444, 459
BstFNI CGCG 1 cut(s) 22
BstHHI GCGC 3 cut(s) 22, 52, 76
BstMWI GCNNNNNNNGC 7 cut(s) 26, 58, 73, 428, 431, 437, 440
BstNI CCWGG 3 cut(s) 47, 89, 113
BstSCI CCNGG 3 cut(s) 45, 87, 111
BstSFI CTRYAG 2 cut(s) 252, 423
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 8 cut(s) 41, 220, 409, 418, 427, 437, 440, 442
BsuRI GGCC 2 cut(s) 93, 116
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 3 cut(s) 54, 95, 453
CaiI CAGNNNCTG 2 cut(s) 431, 458
CfoI GCGC 3 cut(s) 22, 52, 76
Cfr13I GGNCC 2 cut(s) 79, 91
Csp6I GTAC 1 cut(s) 35
CviAII CATG 1 cut(s) 331
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 8 cut(s) 57, 63, 99, 192, 270, 369, 444, 459
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 141
EcoRII CCWGG 3 cut(s) 45, 87, 111
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 1 cut(s) 334
FaiI YATR 2 cut(s) 180, 332
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FaqI GGGAC 2 cut(s) 70, 350
FatI CATG 1 cut(s) 330
FauI CCCGC 1 cut(s) 15
Fnu4HI GCNGC 9 cut(s) 30, 167, 209, 423, 426, 429, 432, 441, 456
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 9 cut(s) 30, 167, 209, 423, 426, 429, 432, 441, 456
GlaI GCGC 3 cut(s) 21, 51, 75
GluI GCNGC 9 cut(s) 30, 167, 209, 423, 426, 429, 432, 441, 456
HaeIII GGCC 2 cut(s) 93, 116
HhaI GCGC 3 cut(s) 22, 52, 76
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 334
Hin6I GCGC 3 cut(s) 20, 50, 74
HinP1I GCGC 3 cut(s) 20, 50, 74
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
Hpy166II GTNNAC 1 cut(s) 315
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 1 cut(s) 446
Hpy8I GTNNAC 1 cut(s) 315
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 2 cut(s) 256, 325
HpyCH4V TGCA 4 cut(s) 29, 233, 361, 425
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 58, 73, 428, 431, 437, 440
HpyF3I CTNAG 8 cut(s) 57, 63, 99, 192, 270, 369, 444, 459
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 334
HspAI GCGC 3 cut(s) 20, 50, 74
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 1 cut(s) 448
Lsp1109I GCAGC 8 cut(s) 41, 220, 409, 418, 427, 437, 440, 442
MaeIII GTNAC 2 cut(s) 102, 259
MbiI CCGCTC 1 cut(s) 169
MboII GAAGA 5 cut(s) 142, 145, 163, 166, 292
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 1 cut(s) 141
MnlI CCTC 7 cut(s) 72, 78, 108, 189, 211, 327, 454
MseI TTAA 1 cut(s) 183
MspA1I CMGCKG 2 cut(s) 431, 455
MspR9I CCNGG 3 cut(s) 47, 89, 113
MvaI CCWGG 3 cut(s) 47, 89, 113
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 7 cut(s) 26, 58, 73, 428, 431, 437, 440
NlaIII CATG 1 cut(s) 334
NlaIV GGNNCC 1 cut(s) 450
NmuCI GTSAC 2 cut(s) 102, 259
PasI CCCWGGG 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 176
PkrI GCNGC 9 cut(s) 31, 168, 210, 424, 427, 430, 433, 442, 457
Psp124BI GAGCTC 1 cut(s) 228
Psp6I CCWGG 3 cut(s) 45, 87, 111
PspGI CCWGG 3 cut(s) 45, 87, 111
PspN4I GGNNCC 1 cut(s) 450
PspPI GGNCC 2 cut(s) 79, 91
PstI CTGCAG 1 cut(s) 427
PstNI CAGNNNCTG 2 cut(s) 431, 458
PvuII CAGCTG 2 cut(s) 431, 455
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SacI GAGCTC 1 cut(s) 228
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 9 cut(s) 30, 167, 209, 423, 426, 429, 432, 441, 456
Sau96I GGNCC 2 cut(s) 79, 91
ScrFI CCNGG 3 cut(s) 47, 89, 113
SduI GDGCHC 1 cut(s) 228
SetI ASST 8 cut(s) 18, 81, 200, 222, 228, 433, 442, 457
SfcI CTRYAG 2 cut(s) 252, 423
SinI GGWCC 1 cut(s) 79
SmlI CTYRAG 2 cut(s) 69, 435
SmoI CTYRAG 2 cut(s) 69, 435
Sse9I AATT 1 cut(s) 141
SsiI CCGC 2 cut(s) 22, 167
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 3 cut(s) 45, 87, 111
TaaI ACNGT 2 cut(s) 256, 325
TasI AATT 1 cut(s) 141
TauI GCSGC 1 cut(s) 169
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseFI GTSAC 2 cut(s) 102, 259
TseI GCWGC 8 cut(s) 29, 208, 422, 425, 428, 431, 440, 455
Tsp45I GTSAC 2 cut(s) 102, 259
TspDTI ATGAA 1 cut(s) 423
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.