MD12G1243900.v1.1

At2g34160-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0016514
Physical Location & Seq
Forward (+)
31452552 .. 31454446
1895 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1243900.v1.1.491

Sequence Viewer

Length: 405 bp
ATGGCGGCAGCTCAAATGCAGAGAGTCGCAGCTCCACCGCAGCAACCGATTGAGGCGCCGAAGAAGAACAGAATTCAGGTCTCCAACACCAAGAAACCGCTCTTCTTCTACGTCAATCTCGCTAAGAGGTACATAGAGCAGCACAATGAGGTTGAGCTCTCTGCACTGGGAATGGCAATCACTACGGTTGTCACTATTGCCGAGATTTTGAAGAATAATGGATTGGCTATTGAGAAGAAGGTGTCTACATCTACCGTTGGAATGAAAGACGAGATTAAGGGTCGCCTCATGCAGAAGGCTAAGATCGAGATTGTGCTGGGGAAGTCTGAAAAATTTGACGCTATAATGCAAATGAATGCTGCTGTACTTGCACCAGAGTCAGTTGCGACCGAGGGAAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alba

Protein Analysis

135

Amino Acids

14.71

Weight (kDa)

9.7

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 23 - 84 1.5e-13 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04620
fragaria_vesca FvH4_6g02590
malus_domestica MD04G1226900.v1.1 MD12G1243900.v1.1
prunus_persica Prupe.6G345600_v2.0.a1
pyrus_communis pycom04g20020
rosa_chinensis RchiOBHm_Chr3g0450501
rosa_laevigata RLG00000025726
rosa_multiflora Rmu_sc0000078.1_g000053
rosa_roxburghii Rroxscaffold_6G00428180
rosa_rugosa Rorug02G0628100
rosa_samantha Rh3BG029300 Rh3DG029000
rosa_wichuraiana Rw3G002220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AccBSI CCGCTC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 245
AciI CCGC 3 cut(s) 5, 38, 98
AcsI RAATTY 2 cut(s) 72, 332
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 2 cut(s) 131, 366
AgsI TTSAA 1 cut(s) 211
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 3 cut(s) 11, 32, 157
AluI AGCT 3 cut(s) 11, 32, 157
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 85
ApeKI GCWGC 5 cut(s) 8, 29, 40, 139, 359
ApoI RAATTY 2 cut(s) 72, 332
AspLEI GCGC 1 cut(s) 58
BanI GGYRCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 5 cut(s) 20, 41, 52, 151, 346
BcoDI GTCTC 1 cut(s) 85
BfoI RGCGCY 1 cut(s) 59
BisI GCNGC 6 cut(s) 6, 9, 30, 41, 140, 360
BlsI GCNGC 6 cut(s) 7, 10, 31, 42, 141, 361
BmiI GGNNCC 1 cut(s) 57
BmrI ACTGGG 1 cut(s) 176
BmuI ACTGGG 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 390
Bse1I ACTGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 171
BseXI GCAGC 5 cut(s) 20, 41, 52, 151, 346
BseYI CCCAGC 1 cut(s) 316
BsgI GTGCAG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 390
BshNI GGYRCC 1 cut(s) 55
BsiEI CGRYCG 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 85
BsmI GAATGC 1 cut(s) 361
Bso31I GGTCTC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 303
BspACI CCGC 3 cut(s) 5, 38, 98
BspLI GGNNCC 1 cut(s) 57
BspQI GCTCTTC 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 85
BsrBI CCGCTC 1 cut(s) 100
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 1 cut(s) 303
BssNI GRCGYC 1 cut(s) 56
Bst4CI ACNGT 2 cut(s) 187, 256
Bst6I CTCTTC 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 56
BstDEI CTNAG 2 cut(s) 123, 300
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 1 cut(s) 303
BstMCI CGRYCG 1 cut(s) 390
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstV1I GCAGC 5 cut(s) 20, 41, 52, 151, 346
BtsIMutI CAGTG 1 cut(s) 164
CfoI GCGC 1 cut(s) 58
CseI GACGC 1 cut(s) 347
Csp6I GTAC 2 cut(s) 130, 365
CviAII CATG 1 cut(s) 289
CviJI RGCY 5 cut(s) 11, 32, 157, 227, 299
CviKI_1 RGCY 5 cut(s) 11, 32, 157, 227, 299
CviQI GTAC 2 cut(s) 130, 365
DdeI CTNAG 2 cut(s) 123, 300
DinI GGCGCC 1 cut(s) 57
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Ecl136II GAGCTC 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 85
Eco53kI GAGCTC 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 159
EgeI GGCGCC 1 cut(s) 57
EheI GGCGCC 1 cut(s) 57
FaeI CATG 1 cut(s) 292
FaiI YATR 3 cut(s) 134, 290, 344
FatI CATG 1 cut(s) 288
FblI GTMKAC 1 cut(s) 245
Fnu4HI GCNGC 6 cut(s) 6, 9, 30, 41, 140, 360
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 6 cut(s) 6, 9, 30, 41, 140, 360
GlaI GCGC 1 cut(s) 57
GluI GCNGC 6 cut(s) 6, 9, 30, 41, 140, 360
GsaI CCCAGC 1 cut(s) 320
HaeII RGCGCY 1 cut(s) 59
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 2 cut(s) 24, 377
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 1 cut(s) 307
Hpy8I GTNNAC 1 cut(s) 246
HpyAV CCTTC 2 cut(s) 232, 289
HpyCH4III ACNGT 2 cut(s) 187, 256
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 5 cut(s) 19, 164, 292, 349, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 2 cut(s) 123, 300
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 1 cut(s) 56
KasI GGCGCC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 303
LguI GCTCTTC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 4 cut(s) 62, 152, 302, 387
Lsp1109I GCAGC 5 cut(s) 20, 41, 52, 151, 346
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 305
MbiI CCGCTC 1 cut(s) 100
MboI GATC 1 cut(s) 303
MboII GAAGA 6 cut(s) 73, 76, 94, 97, 223, 247
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 2 cut(s) 72, 332
Mly113I GGCGCC 1 cut(s) 56
MlyI GAGTC 2 cut(s) 33, 386
MmeI TCCRAC 2 cut(s) 108, 238
MnlI CCTC 5 cut(s) 46, 120, 142, 296, 385
MseI TTAA 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 361
MwoI GCNNNNNNNGC 1 cut(s) 368
NarI GGCGCC 1 cut(s) 56
NdeII GATC 1 cut(s) 303
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 57
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 107
PctI GAATGC 1 cut(s) 361
PkrI GCNGC 6 cut(s) 7, 10, 31, 42, 141, 361
PleI GAGTC 2 cut(s) 32, 385
PluTI GGCGCC 1 cut(s) 59
PpsI GAGTC 2 cut(s) 32, 385
Psp124BI GAGCTC 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 57
RsaI GTAC 2 cut(s) 131, 366
RsaNI GTAC 2 cut(s) 130, 365
SacI GAGCTC 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 6 cut(s) 6, 9, 30, 41, 140, 360
Sau3AI GATC 1 cut(s) 303
SchI GAGTC 2 cut(s) 33, 386
SduI GDGCHC 1 cut(s) 159
SetI ASST 8 cut(s) 13, 34, 81, 114, 131, 153, 159, 243
SfoI GGCGCC 1 cut(s) 57
Sse9I AATT 2 cut(s) 72, 332
SsiI CCGC 3 cut(s) 5, 38, 98
SspDI GGCGCC 1 cut(s) 55
SstI GAGCTC 1 cut(s) 159
TaaI ACNGT 2 cut(s) 187, 256
TaiI ACGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 306
TaqII GACCGA 1 cut(s) 404
TasI AATT 2 cut(s) 72, 332
TatI WGTACW 1 cut(s) 364
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 5 cut(s) 8, 29, 40, 139, 359
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 278, 368
TspRI CASTG 1 cut(s) 171
XapI RAATTY 2 cut(s) 72, 332
XmiI GTMKAC 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.