AT3G04780

Encodes a protein with little sequence identity with any other protein of known structure or function. Part of this protein shows a 42 sequence identity with the C-terminal domain of the 32-kD human thioredoxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013361
Physical Location & Seq
Reverse (-)
1310998 .. 1313090
2093 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G04780.1

Sequence Viewer

Length: 531 bp
ATGTCCGCCGAATCAGCTAGCCAAATTCCTAAGGGACAGGTTGATCTACTAGATTTTATTGACTGGTCTGGTGTTGAATGTCTTAACCAAAGCTCAAGTCACTCTTTGCCCAATGCTCTCAAGCAGGGATATAGAGAAGATGAAGGTTTAAACTTAGAGAGTGATGCTGATGAACAACTTCTCATCTATATTCCTTTTAACCAAGTTATCAAACTACATTCCTTTGCTATCAAAGGCCCTGAAGAGGAAGGTCCTAAAACTGTAAAGTTTTTCTCAAACAAAGAGCACATGTGCTTCAGCAATGTCAATGATTTTCCTCCAAGCGACACCGCTGAACTAACTGAAGAAAACCTTAAGGGAAAACCGGTGGTCCTAAAGTACGTAAAGTTTCAGAATGTTCGTAGCTTGACGATCTTCATCGAAGCCAACCAATCAGGTTCTGAGGTCACCAAGGTTCAGAAGATTGCTCTCTATGGCTCAACGGTGGAGACGACTGATATGAAGGGATTGAAAAAGATTGAAGATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PITH

Protein Analysis

176

Amino Acids

19.67

Weight (kDa)

4.94

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PITH PF06201 8 - 173 1e-52 PITH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04780
fragaria_vesca FvH4_6g03140
malus_domestica MD04G1222600.v1.1 MD12G1238700.v1.1
prunus_persica Prupe.6G341600_v2.0.a1
pyrus_communis pycom04g19690 pycom12g21940
rosa_chinensis RchiOBHm_Chr3g0451391
rosa_laevigata RLG00000025663
rosa_multiflora Rmu_sc0021369.1_g000001
rosa_roxburghii Rroxscaffold_164G00436530 Rroxscaffold_6G00428810
rosa_rugosa Rorug02G0633500
rosa_samantha Rh3AG036500 Rh3BG037100 Rh3CG035700 Rh3DG036600
rosa_wichuraiana Rw3G002690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 6, 330
AcsI RAATTY 1 cut(s) 24
AcuI CTGAAG 3 cut(s) 261, 280, 363
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 244
AflII CTTAAG 1 cut(s) 353
AflIII ACRYGT 1 cut(s) 288
AgeI ACCGGT 1 cut(s) 364
AgsI TTSAA 3 cut(s) 77, 511, 521
AluBI AGCT 3 cut(s) 17, 93, 405
AluI AGCT 3 cut(s) 17, 93, 405
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 482
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 1 cut(s) 235
ApoI RAATTY 1 cut(s) 24
ArsI GACNNNNNNTTYG 2 cut(s) 82, 114
AsiGI ACCGGT 1 cut(s) 364
Asp700I GAANNNNTTC 1 cut(s) 177
AspS9I GGNCC 3 cut(s) 236, 251, 370
AsuHPI GGTGA 1 cut(s) 439
AsuNHI GCTAGC 1 cut(s) 17
AvaII GGWCC 2 cut(s) 251, 370
AxyI CCTNAGG 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 2 cut(s) 18, 50
BfrI CTTAAG 1 cut(s) 353
Bme18I GGWCC 2 cut(s) 251, 370
BmgT120I GGNCC 3 cut(s) 236, 251, 370
BmsI GCATC 1 cut(s) 154
BmtI GCTAGC 1 cut(s) 21
BpuEI CTTGAG 2 cut(s) 79, 104
BsaAI YACGTR 1 cut(s) 382
BsaBI GATNNNNATC 1 cut(s) 416
BsaJI CCNNGG 1 cut(s) 450
BsaWI WCCGGW 1 cut(s) 364
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 68
Bse21I CCTNAGG 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 307
Bse8I GATNNNNATC 1 cut(s) 416
BseDI CCNNGG 1 cut(s) 450
BseJI GATNNNNATC 1 cut(s) 416
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 1 cut(s) 68
BshFI GGCC 1 cut(s) 237
BshTI ACCGGT 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 482
BsmBI CGTCTC 1 cut(s) 482
BsmFI GGGAC 1 cut(s) 48
BsnI GGCC 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 3 cut(s) 43, 411, 523
BspACI CCGC 2 cut(s) 6, 330
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 1 cut(s) 433
BspOI GCTAGC 1 cut(s) 21
BspTI CTTAAG 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 450
BssMI GATC 3 cut(s) 43, 411, 523
BssT1I CCWWGG 1 cut(s) 450
Bst4CI ACNGT 2 cut(s) 262, 484
Bst6I CTCTTC 1 cut(s) 237
BstAFI CTTAAG 1 cut(s) 353
BstBAI YACGTR 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 3 cut(s) 30, 154, 441
BstEII GGTNACC 1 cut(s) 445
BstKTI GATC 3 cut(s) 46, 414, 526
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 3 cut(s) 43, 411, 523
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 292
BstPI GGTNACC 1 cut(s) 445
BstSNI TACGTA 1 cut(s) 382
Bsu36I CCTNAGG 1 cut(s) 30
BsuRI GGCC 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 526
Cac8I GCNNGC 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 440
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 3 cut(s) 236, 251, 370
Csp6I GTAC 1 cut(s) 379
CspAI ACCGGT 1 cut(s) 364
CviAII CATG 1 cut(s) 289
CviJI RGCY 7 cut(s) 17, 21, 93, 237, 405, 425, 477
CviKI_1 RGCY 7 cut(s) 17, 21, 93, 237, 405, 425, 477
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 3 cut(s) 30, 154, 441
DpnI GATC 3 cut(s) 45, 413, 525
DpnII GATC 3 cut(s) 43, 411, 523
DraI TTTAAA 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco105I TACGTA 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 450
Eco47I GGWCC 2 cut(s) 251, 370
Eco57I CTGAAG 3 cut(s) 261, 280, 363
Eco81I CCTNAGG 1 cut(s) 30
Eco91I GGTNACC 1 cut(s) 445
EcoO109I RGGNCCY 2 cut(s) 236, 251
EcoO65I GGTNACC 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 450
Esp3I CGTCTC 1 cut(s) 482
FaeI CATG 1 cut(s) 292
FaiI YATR 5 cut(s) 132, 189, 290, 474, 500
FalI AAGNNNNNCTT 4 cut(s) 88, 120, 336, 368
FaqI GGGAC 1 cut(s) 48
FatI CATG 1 cut(s) 288
FspBI CTAG 2 cut(s) 18, 50
HaeIII GGCC 1 cut(s) 237
HapII CCGG 1 cut(s) 365
Hin1II CATG 1 cut(s) 292
HinfI GANTC 1 cut(s) 11
HpaII CCGG 1 cut(s) 365
HphI GGTGA 1 cut(s) 439
Hpy188I TCNGA 3 cut(s) 393, 442, 459
HpyAV CCTTC 3 cut(s) 137, 242, 496
HpyCH4III ACNGT 2 cut(s) 262, 484
HpyCH4IV ACGT 1 cut(s) 381
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 3 cut(s) 30, 154, 441
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 1 cut(s) 292
Kzo9I GATC 3 cut(s) 43, 411, 523
LpnPI CCDG 7 cut(s) 23, 49, 54, 110, 252, 378, 420
LweI GCATC 1 cut(s) 154
MaeI CTAG 2 cut(s) 18, 50
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 2 cut(s) 98, 445
MalI GATC 3 cut(s) 45, 413, 525
MboI GATC 3 cut(s) 43, 411, 523
MboII GAAGA 5 cut(s) 149, 254, 356, 406, 472
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 1 cut(s) 24
MnlI CCTC 3 cut(s) 238, 327, 436
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 4 cut(s) 84, 149, 198, 354
MspA1I CMGCKG 1 cut(s) 332
MspCI CTTAAG 1 cut(s) 353
MspI CCGG 1 cut(s) 365
MssI GTTTAAAC 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 3 cut(s) 43, 411, 523
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 98, 445
NspI RCATGY 1 cut(s) 292
PciI ACATGT 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 488
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 11
PinAI ACCGGT 1 cut(s) 364
PmeI GTTTAAAC 1 cut(s) 150
Ppu21I YACGTR 1 cut(s) 382
PpuMI RGGWCCY 1 cut(s) 251
PscI ACATGT 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 251
PspEI GGTNACC 1 cut(s) 445
PspPI GGNCC 3 cut(s) 236, 251, 370
PspPPI RGGWCCY 1 cut(s) 251
PstNI CAGNNNCTG 1 cut(s) 440
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SaqAI TTAA 4 cut(s) 84, 149, 198, 354
Sau3AI GATC 3 cut(s) 43, 411, 523
Sau96I GGNCC 3 cut(s) 236, 251, 370
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 1 cut(s) 154
SinI GGWCC 2 cut(s) 251, 370
SmlI CTYRAG 3 cut(s) 94, 119, 353
SmoI CTYRAG 3 cut(s) 94, 119, 353
SnaBI TACGTA 1 cut(s) 382
Sse9I AATT 1 cut(s) 24
SsiI CCGC 2 cut(s) 6, 330
SspMI CTAG 2 cut(s) 18, 50
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 2 cut(s) 262, 484
TaiI ACGT 1 cut(s) 384
TaqI TCGA 1 cut(s) 420
TasI AATT 1 cut(s) 24
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 4 cut(s) 84, 149, 198, 354
Tru9I TTAA 4 cut(s) 84, 149, 198, 354
TseFI GTSAC 2 cut(s) 98, 445
Tsp45I GTSAC 2 cut(s) 98, 445
TspDTI ATGAA 4 cut(s) 156, 186, 406, 515
Vha464I CTTAAG 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 251, 370
XapI RAATTY 1 cut(s) 24
XceI RCATGY 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 2 cut(s) 18, 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.