Rorug02G0633500

PITH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013361
Physical Location & Seq
Reverse (-)
74770867 .. 74772799
1933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0633500.1

Sequence Viewer

Length: 1164 bp
ATGGCAACAGCTGCGCTGCTCATTGAAGCCAACCCATTAATGAAATTGAAGCAAAACACCCTATTACGCACTTTTCGTCCTCTTCCATCAAAACCAATCGCATTAACGTTTAGCAATCAACGTTGCTTTGCTCCTAGAATATTTAAGAACCCTAAACCTCAATGTTTCTTGCCCGCCGACTCTAAATGTCATCCCTCTCAGTCTCAGTCCCTCAATGTTCTTAAAGATAATCGGCCAGCGCCAGCAAACCCTAATTTCACAGTCGCCGTTAATAAGGTATGGGAAAAGTGTCACAAGGCATTGAGGGAACCAGCAATGGCTGCCGTGCTGTTTGGTTTGTTAGTCATGTGCAACCCCAACTCAGCAGCGTTGGCTGCTCCGGTGGGTCGGGTCGGTGGAAGCTTGACACCCACGCGTACGACGTTGCACCATCCATCTAAATATTCTTCGACCACAATCACAACGGCCGACCACTACGATGATCCGATCTGGGAAATTGCATTCTATTTTTTCTTTAATTTATACTTTCTCTGGGGATTGTTTGCGTTGCTTTCGCCTTACCCCAAGTTTTACACGGCTGCTTTGTTTATTTTCGGGACAGTTTTCACCGCTATTTGGGTTCACTCTCTAGGTCAAACAAGTGTTGTCAAGCTCCAGCTTCAGGTTACTTTATCGAACACTGGACGAGCAATTCAAACGGATCTTAATCGGATCGCTGAAACTGCAGATACCTCTACACGTACGGGTTTGAGGTATGTTTTGAGAGATACAGCAGTAGCTCTATTTCGGCAACCTGATTATTGCATTTCCGGTTACTCATGTGTGGGTGTACCAAAGTTCACTAGAGCGGCTGCACAGCAATGCTTTGATAAAATTGTGTTCAGAGAGAGGGTTAGATATGACGAAGAGACCATTGTCAATGTGGACAATATAAAAACTCAAAGCACAACAAGTCAGAGATCAACTAATGAATCTCACAATGACAATGTAGAGGTTACAATTTTACTTGCTGTTGATGGAAAGTCTAAGTTGCCCACTATCATTGACAGCAGTGATTTGAAGAAAGTGATGGAAGAGCTTGCATCCATTGATCCCAGCAGACTACTTTTAGGAGTAGAGGTACTGTGGACTCCTCAGTTCTCTTCACATGCGGCAAGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PITH

Protein Analysis

387

Amino Acids

43.07

Weight (kDa)

9.26

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 218 - 381 1.6e-43 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04780
fragaria_vesca FvH4_6g03140
malus_domestica MD04G1222600.v1.1 MD12G1238700.v1.1
prunus_persica Prupe.6G341600_v2.0.a1
pyrus_communis pycom04g19690 pycom12g21940
rosa_chinensis RchiOBHm_Chr3g0451391
rosa_laevigata RLG00000025663
rosa_multiflora Rmu_sc0021369.1_g000001
rosa_roxburghii Rroxscaffold_164G00436530 Rroxscaffold_6G00428810
rosa_rugosa Rorug02G0633500
rosa_samantha Rh3AG036500 Rh3BG037100 Rh3CG035700 Rh3DG036600
rosa_wichuraiana Rw3G002690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 848
AccII CGCG 1 cut(s) 415
AciI CCGC 4 cut(s) 174, 609, 848, 1151
AclI AACGTT 2 cut(s) 107, 121
AclWI GGATC 4 cut(s) 476, 708, 719, 1085
AcoI YGGCCR 2 cut(s) 233, 465
AcuI CTGAAG 1 cut(s) 644
AfaI GTAC 4 cut(s) 418, 742, 831, 1122
AfiI CCNNNNNNNGG 2 cut(s) 615, 661
AflIII ACRYGT 2 cut(s) 413, 737
AgsI TTSAA 4 cut(s) 26, 49, 695, 1060
AluBI AGCT 6 cut(s) 11, 402, 652, 658, 779, 1078
AluI AGCT 6 cut(s) 11, 402, 652, 658, 779, 1078
Alw26I GTCTC 2 cut(s) 207, 902
AlwI GGATC 4 cut(s) 476, 708, 719, 1085
AoxI GGCC 2 cut(s) 233, 465
ApeKI GCWGC 7 cut(s) 11, 16, 320, 365, 374, 578, 851
AseI ATTAAT 1 cut(s) 38
AspLEI GCGC 2 cut(s) 16, 241
AsuHPI GGTGA 1 cut(s) 598
BaeI ACNNNNGTAYC 2 cut(s) 759, 792
BbvI GCAGC 6 cut(s) 3, 307, 361, 377, 565, 838
BccI CCATC 5 cut(s) 94, 438, 442, 1010, 1063
BceAI ACGGC 4 cut(s) 251, 308, 480, 591
BcoDI GTCTC 2 cut(s) 207, 902
BfaI CTAG 3 cut(s) 135, 629, 843
BfmI CTRYAG 1 cut(s) 723
BfoI RGCGCY 1 cut(s) 242
BisI GCNGC 9 cut(s) 12, 17, 321, 366, 375, 579, 849, 852, 1152
BlsI GCNGC 9 cut(s) 13, 18, 322, 367, 376, 580, 850, 853, 1153
BmiI GGNNCC 1 cut(s) 309
BmsI GCATC 1 cut(s) 1091
BoxI GACNNNNGTC 1 cut(s) 914
BpmI CTGGAG 1 cut(s) 638
BsaAI YACGTR 1 cut(s) 740
BsaBI GATNNNNATC 1 cut(s) 705
BsaI GGTCTC 1 cut(s) 902
BsaWI WCCGGW 2 cut(s) 379, 809
BsaXI ACNNNNNCTCC 2 cut(s) 1104, 1134
Bsc4I CCNNNNNNNGG 2 cut(s) 615, 661
Bse1I ACTGG 1 cut(s) 685
Bse3DI GCAATG 2 cut(s) 321, 866
Bse8I GATNNNNATC 1 cut(s) 705
BseGI GGATG 3 cut(s) 190, 430, 1082
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 2 cut(s) 615, 661
BseMI GCAATG 2 cut(s) 321, 866
BseMII CTCAG 4 cut(s) 212, 218, 375, 1148
BseNI ACTGG 1 cut(s) 685
BseRI GAGGAG 1 cut(s) 1122
BseX3I CGGCCG 1 cut(s) 465
BseXI GCAGC 6 cut(s) 3, 307, 361, 377, 565, 838
BseYI CCCAGC 1 cut(s) 1094
BsgI GTGCAG 1 cut(s) 837
Bsh1236I CGCG 1 cut(s) 415
Bsh1285I CGRYCG 1 cut(s) 468
BshFI GGCC 2 cut(s) 235, 467
BsiEI CGRYCG 1 cut(s) 468
BsiSI CCGG 2 cut(s) 380, 810
BsiWI CGTACG 2 cut(s) 416, 740
BslFI GGGAC 2 cut(s) 193, 610
BslI CCNNNNNNNGG 2 cut(s) 615, 661
BsmAI GTCTC 2 cut(s) 207, 902
BsmFI GGGAC 2 cut(s) 193, 610
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 2 cut(s) 235, 467
Bso31I GGTCTC 1 cut(s) 902
Bsp143I GATC 6 cut(s) 481, 486, 700, 711, 959, 1090
BspACI CCGC 4 cut(s) 174, 609, 848, 1151
BspANI GGCC 2 cut(s) 235, 467
BspCNI CTCAG 4 cut(s) 211, 217, 374, 1147
BspFNI CGCG 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 309
BspMAI CTGCAG 1 cut(s) 727
BspPI GGATC 4 cut(s) 476, 708, 719, 1085
BspQI GCTCTTC 1 cut(s) 1068
BspTNI GGTCTC 1 cut(s) 902
BsrBI CCGCTC 1 cut(s) 848
BsrDI GCAATG 2 cut(s) 321, 866
BsrI ACTGG 1 cut(s) 685
BssMI GATC 6 cut(s) 481, 486, 700, 711, 959, 1090
Bst4CI ACNGT 3 cut(s) 262, 601, 1125
Bst6I CTCTTC 4 cut(s) 87, 900, 1068, 1147
BstAPI GCANNNNNTGC 2 cut(s) 11, 320
BstBAI YACGTR 1 cut(s) 740
BstC8I GCNNGC 5 cut(s) 174, 237, 243, 1080, 1156
BstDEI CTNAG 5 cut(s) 198, 204, 361, 1026, 1134
BstF5I GGATG 3 cut(s) 190, 430, 1082
BstFNI CGCG 1 cut(s) 415
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 2 cut(s) 16, 241
BstKTI GATC 6 cut(s) 484, 489, 703, 714, 962, 1093
BstMAI GTCTC 2 cut(s) 207, 902
BstMBI GATC 6 cut(s) 481, 486, 700, 711, 959, 1090
BstMCI CGRYCG 1 cut(s) 468
BstMWI GCNNNNNNNGC 5 cut(s) 11, 320, 371, 374, 722
BstNSI RCATGY 1 cut(s) 1151
BstPAI GACNNNNGTC 1 cut(s) 914
BstSFI CTRYAG 1 cut(s) 723
BstUI CGCG 1 cut(s) 415
BstV1I GCAGC 6 cut(s) 3, 307, 361, 377, 565, 838
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
BstZI CGGCCG 1 cut(s) 465
BsuRI GGCC 2 cut(s) 235, 467
BtsCI GGATG 3 cut(s) 190, 430, 1082
BtsI GCAGTG 1 cut(s) 1057
BtsIMutI CAGTG 2 cut(s) 678, 1057
Cac8I GCNNGC 5 cut(s) 174, 237, 243, 1080, 1156
CfoI GCGC 2 cut(s) 16, 241
Csp6I GTAC 4 cut(s) 417, 741, 830, 1121
CspCI CAANNNNNGTGG 2 cut(s) 1024, 1059
CviAII CATG 3 cut(s) 346, 819, 1148
CviQI GTAC 4 cut(s) 417, 741, 830, 1121
DdeI CTNAG 5 cut(s) 198, 204, 361, 1026, 1134
DpnI GATC 6 cut(s) 483, 488, 702, 713, 961, 1092
DpnII GATC 6 cut(s) 481, 486, 700, 711, 959, 1090
EaeI YGGCCR 2 cut(s) 233, 465
EagI CGGCCG 1 cut(s) 465
Eam1104I CTCTTC 4 cut(s) 87, 900, 1068, 1147
EarI CTCTTC 4 cut(s) 87, 900, 1068, 1147
EclXI CGGCCG 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 902
Eco52I CGGCCG 1 cut(s) 465
Eco57I CTGAAG 1 cut(s) 644
FaeI CATG 3 cut(s) 349, 822, 1151
FaiI YATR 8 cut(s) 280, 347, 523, 756, 820, 900, 932, 1149
FaqI GGGAC 2 cut(s) 193, 610
FatI CATG 3 cut(s) 345, 818, 1147
FauI CCCGC 1 cut(s) 181
Fnu4HI GCNGC 9 cut(s) 12, 17, 321, 366, 375, 579, 849, 852, 1152
FokI GGATG 3 cut(s) 177, 417, 1069
Fsp4HI GCNGC 9 cut(s) 12, 17, 321, 366, 375, 579, 849, 852, 1152
FspBI CTAG 3 cut(s) 135, 629, 843
GlaI GCGC 2 cut(s) 15, 240
GluI GCNGC 9 cut(s) 12, 17, 321, 366, 375, 579, 849, 852, 1152
GsaI CCCAGC 1 cut(s) 1098
GsuI CTGGAG 1 cut(s) 638
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 2 cut(s) 235, 467
HapII CCGG 2 cut(s) 380, 810
HhaI GCGC 2 cut(s) 16, 241
Hin1II CATG 3 cut(s) 349, 822, 1151
Hin6I GCGC 2 cut(s) 14, 239
HinP1I GCGC 2 cut(s) 14, 239
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 3 cut(s) 179, 971, 1129
HpaII CCGG 2 cut(s) 380, 810
HphI GGTGA 1 cut(s) 598
Hpy166II GTNNAC 5 cut(s) 622, 830, 840, 925, 1128
Hpy188I TCNGA 4 cut(s) 486, 711, 884, 957
Hpy188III TCNNGA 1 cut(s) 595
Hpy8I GTNNAC 5 cut(s) 622, 830, 840, 925, 1128
Hpy99I CGWCG 1 cut(s) 424
HpyCH4III ACNGT 3 cut(s) 262, 601, 1125
HpyCH4IV ACGT 4 cut(s) 107, 121, 422, 739
HpyCH4V TGCA 7 cut(s) 351, 427, 500, 725, 804, 854, 1082
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 320, 371, 374, 722
HpyF3I CTNAG 5 cut(s) 198, 204, 361, 1026, 1134
HpySE526I ACGT 4 cut(s) 107, 121, 422, 739
Hsp92II CATG 3 cut(s) 349, 822, 1151
HspAI GCGC 2 cut(s) 14, 239
Kzo9I GATC 6 cut(s) 481, 486, 700, 711, 959, 1090
LguI GCTCTTC 1 cut(s) 1068
LmnI GCTCC 3 cut(s) 136, 382, 657
Lsp1109I GCAGC 6 cut(s) 3, 307, 361, 377, 565, 838
LweI GCATC 1 cut(s) 1091
MaeI CTAG 3 cut(s) 135, 629, 843
MaeII ACGT 4 cut(s) 107, 121, 422, 739
MaeIII GTNAC 4 cut(s) 290, 664, 812, 994
MalI GATC 6 cut(s) 483, 488, 702, 713, 961, 1092
MbiI CCGCTC 1 cut(s) 848
MboI GATC 6 cut(s) 481, 486, 700, 711, 959, 1090
MboII GAAGA 6 cut(s) 74, 438, 917, 1072, 1085, 1134
MflI RGATCY 1 cut(s) 700
MluCI AATT 7 cut(s) 44, 253, 495, 517, 690, 873, 999
MluI ACGCGT 1 cut(s) 413
MlyI GAGTC 2 cut(s) 173, 1123
MseI TTAA 7 cut(s) 38, 104, 144, 222, 270, 516, 705
MslI CAYNNNNRTG 2 cut(s) 477, 859
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 2 cut(s) 380, 810
Mva1269I GAATGC 1 cut(s) 500
MvnI CGCG 1 cut(s) 415
MwoI GCNNNNNNNGC 5 cut(s) 11, 320, 371, 374, 722
NdeII GATC 6 cut(s) 481, 486, 700, 711, 959, 1090
NlaIII CATG 3 cut(s) 349, 822, 1151
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 1 cut(s) 1151
PciSI GCTCTTC 1 cut(s) 1068
PcsI WCGNNNNNNNCGW 2 cut(s) 73, 419
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 1 cut(s) 971
Pfl23II CGTACG 2 cut(s) 416, 740
PkrI GCNGC 9 cut(s) 13, 18, 322, 367, 376, 580, 850, 853, 1153
PleI GAGTC 2 cut(s) 173, 1123
PpsI GAGTC 2 cut(s) 173, 1123
Ppu21I YACGTR 1 cut(s) 740
PshAI GACNNNNGTC 1 cut(s) 914
PshBI ATTAAT 1 cut(s) 38
Psp1406I AACGTT 2 cut(s) 107, 121
PspFI CCCAGC 1 cut(s) 1094
PspLI CGTACG 2 cut(s) 416, 740
PspN4I GGNNCC 1 cut(s) 309
PstI CTGCAG 1 cut(s) 727
PsuI RGATCY 1 cut(s) 700
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 4 cut(s) 418, 742, 831, 1122
RsaNI GTAC 4 cut(s) 417, 741, 830, 1121
RseI CAYNNNNRTG 2 cut(s) 477, 859
SapI GCTCTTC 1 cut(s) 1068
SaqAI TTAA 7 cut(s) 38, 104, 144, 222, 270, 516, 705
SatI GCNGC 9 cut(s) 12, 17, 321, 366, 375, 579, 849, 852, 1152
Sau3AI GATC 6 cut(s) 481, 486, 700, 711, 959, 1090
SchI GAGTC 2 cut(s) 173, 1123
SfaNI GCATC 1 cut(s) 1091
SfcI CTRYAG 1 cut(s) 723
SmiMI CAYNNNNRTG 2 cut(s) 477, 859
Sse9I AATT 7 cut(s) 44, 253, 495, 517, 690, 873, 999
SsiI CCGC 4 cut(s) 174, 609, 848, 1151
SspI AATATT 2 cut(s) 141, 443
SspMI CTAG 3 cut(s) 135, 629, 843
TaaI ACNGT 3 cut(s) 262, 601, 1125
TaiI ACGT 4 cut(s) 110, 124, 425, 742
TaqI TCGA 2 cut(s) 449, 674
TasI AATT 7 cut(s) 44, 253, 495, 517, 690, 873, 999
TauI GCSGC 2 cut(s) 851, 1154
TfiI GAWTC 1 cut(s) 971
Tru1I TTAA 7 cut(s) 38, 104, 144, 222, 270, 516, 705
Tru9I TTAA 7 cut(s) 38, 104, 144, 222, 270, 516, 705
TscAI CASTG 2 cut(s) 685, 1057
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 7 cut(s) 11, 16, 320, 365, 374, 578, 851
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 56, 984
TspGWI ACGGA 1 cut(s) 713
TspRI CASTG 2 cut(s) 685, 1057
VspI ATTAAT 1 cut(s) 38
XceI RCATGY 1 cut(s) 1151
XcmI CCANNNNNNNNNTGG 1 cut(s) 919
XspI CTAG 3 cut(s) 135, 629, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.