Rroxscaffold_6G00428810

PITH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013361
Physical Location & Seq
Reverse (-)
49165813 .. 49168610
2798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428810.1

Sequence Viewer

Length: 456 bp
ATGTCTGCGGAATCAGCCAGCGCAATTCAAAGAAGCCAAGTTGATCTGATGGACTTCATAGATTGGTCTGGGGTTGAATGCCTCAACCAAAGCACCAGTCACTCTGTTGCTAACGCTCTTAAGCAGGGATACAGAGACGATGATGGTTTGAATCTAGAGAGTGATGCAGATGAGCAGCTTCTGATCTACATTCCTTTTCTTCAAGTCATTAAGCTGCACTCTATTGTCATCAAAGGACCGGAAGAGGAAGGTCCCAAGACAGTGAAGCTTTTTTCAAACAAGGAGCACATGGGTTTCAGCAATGTCAATGACTACCCGGCAAGTGACACAGTTGTTTTATCCCCTGATCATCTAAAGGGAAAACCAGTTGTTTTGAAGTATGTCAAATTTCAAAATGTTCGCAGGGTGGAAACAACTGACATGAAGGGTTTGAAGAAGATTGAGGATGGACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PITH

Protein Analysis

151

Amino Acids

16.88

Weight (kDa)

5.31

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PITH PF06201 8 - 136 2.9e-40 PITH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04780
fragaria_vesca FvH4_6g03140
malus_domestica MD04G1222600.v1.1 MD12G1238700.v1.1
prunus_persica Prupe.6G341600_v2.0.a1
pyrus_communis pycom04g19690 pycom12g21940
rosa_chinensis RchiOBHm_Chr3g0451391
rosa_laevigata RLG00000025663
rosa_multiflora Rmu_sc0021369.1_g000001
rosa_roxburghii Rroxscaffold_164G00436530 Rroxscaffold_6G00428810
rosa_rugosa Rorug02G0633500
rosa_samantha Rh3AG036500 Rh3BG037100 Rh3CG035700 Rh3DG036600
rosa_wichuraiana Rw3G002690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 386
AflII CTTAAG 1 cut(s) 119
AgsI TTSAA 8 cut(s) 29, 77, 151, 203, 276, 376, 392, 433
AluBI AGCT 3 cut(s) 178, 214, 268
AluI AGCT 3 cut(s) 178, 214, 268
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 129
AlwNI CAGNNNCTG 1 cut(s) 181
ApeKI GCWGC 2 cut(s) 175, 214
ApoI RAATTY 1 cut(s) 386
ArsI GACNNNNNNTTYG 2 cut(s) 82, 114
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 236, 251
AsuC2I CCSGG 1 cut(s) 317
AvaII GGWCC 2 cut(s) 236, 251
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 2 cut(s) 187, 201
BccI CCATC 3 cut(s) 43, 137, 440
BciVI GTATCC 1 cut(s) 122
BclI TGATCA 1 cut(s) 346
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 1 cut(s) 155
BfrI CTTAAG 1 cut(s) 119
BfuI GTATCC 1 cut(s) 122
BisI GCNGC 2 cut(s) 176, 215
BlsI GCNGC 2 cut(s) 177, 216
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 2 cut(s) 236, 251
BmgT120I GGNCC 2 cut(s) 236, 251
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 1 cut(s) 154
BpuMI CCSGG 1 cut(s) 317
BsaWI WCCGGW 1 cut(s) 238
Bse1I ACTGG 2 cut(s) 96, 365
Bse3DI GCAATG 1 cut(s) 307
BseGI GGATG 1 cut(s) 451
BseMI GCAATG 1 cut(s) 307
BseNI ACTGG 2 cut(s) 96, 365
BseXI GCAGC 2 cut(s) 187, 201
BsgI GTGCAG 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 2 cut(s) 239, 317
BslFI GGGAC 1 cut(s) 237
BsmAI GTCTC 1 cut(s) 129
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 3 cut(s) 43, 183, 346
BspACI CCGC 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 253
BspTI CTTAAG 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 307
BsrI ACTGG 2 cut(s) 96, 365
BssMI GATC 3 cut(s) 43, 183, 346
Bst4CI ACNGT 2 cut(s) 262, 331
Bst6I CTCTTC 1 cut(s) 237
BstAFI CTTAAG 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 19
BstF5I GGATG 1 cut(s) 451
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 3 cut(s) 46, 186, 349
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 3 cut(s) 43, 183, 346
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 315
BstV1I GCAGC 2 cut(s) 187, 201
BsuI GTATCC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 451
BtsIMutI CAGTG 2 cut(s) 267, 451
Cac8I GCNNGC 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 181
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 236, 251
CviAII CATG 2 cut(s) 289, 421
CviJI RGCY 5 cut(s) 17, 36, 178, 214, 268
CviKI_1 RGCY 5 cut(s) 17, 36, 178, 214, 268
DpnI GATC 3 cut(s) 45, 185, 348
DpnII GATC 3 cut(s) 43, 183, 346
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco47I GGWCC 2 cut(s) 236, 251
EcoO109I RGGNCCY 1 cut(s) 251
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 2 cut(s) 292, 424
FaiI YATR 4 cut(s) 59, 290, 381, 422
FaqI GGGAC 1 cut(s) 237
FatI CATG 2 cut(s) 288, 420
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 176, 215
Fsp4HI GCNGC 2 cut(s) 176, 215
FspBI CTAG 1 cut(s) 155
GlaI GCGC 1 cut(s) 22
GluI GCNGC 2 cut(s) 176, 215
HapII CCGG 2 cut(s) 239, 317
HhaI GCGC 1 cut(s) 23
Hin1II CATG 2 cut(s) 292, 424
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 2 cut(s) 11, 151
HpaII CCGG 2 cut(s) 239, 317
Hpy188I TCNGA 2 cut(s) 48, 183
Hpy188III TCNNGA 1 cut(s) 155
HpyAV CCTTC 2 cut(s) 242, 418
HpyCH4III ACNGT 2 cut(s) 262, 331
HpyCH4V TGCA 2 cut(s) 167, 217
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
Hsp92II CATG 2 cut(s) 292, 424
HspAI GCGC 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 3 cut(s) 43, 183, 346
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 9 cut(s) 31, 54, 109, 110, 252, 330, 357, 378, 388
Lsp1109I GCAGC 2 cut(s) 187, 201
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 98, 323
MalI GATC 3 cut(s) 45, 185, 348
MboI GATC 3 cut(s) 43, 183, 346
MboII GAAGA 4 cut(s) 191, 254, 445, 448
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 2 cut(s) 24, 386
MnlI CCTC 3 cut(s) 92, 238, 436
MseI TTAA 2 cut(s) 120, 210
MspCI CTTAAG 1 cut(s) 119
MspI CCGG 2 cut(s) 239, 317
MspR9I CCNGG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 317
NdeII GATC 3 cut(s) 43, 183, 346
NlaIII CATG 2 cut(s) 292, 424
NlaIV GGNNCC 1 cut(s) 253
NmuCI GTSAC 2 cut(s) 98, 323
PctI GAATGC 1 cut(s) 83
PfeI GAWTC 2 cut(s) 11, 151
PkrI GCNGC 2 cut(s) 177, 216
PpuMI RGGWCCY 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 2 cut(s) 236, 251
PspPPI RGGWCCY 1 cut(s) 251
PstNI CAGNNNCTG 1 cut(s) 181
SaqAI TTAA 2 cut(s) 120, 210
SatI GCNGC 2 cut(s) 176, 215
Sau3AI GATC 3 cut(s) 43, 183, 346
Sau96I GGNCC 2 cut(s) 236, 251
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 1 cut(s) 288
SetI ASST 4 cut(s) 180, 216, 253, 270
SfaNI GCATC 1 cut(s) 154
SinI GGWCC 2 cut(s) 236, 251
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 2 cut(s) 24, 386
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 315
TaaI ACNGT 2 cut(s) 262, 331
TasI AATT 2 cut(s) 24, 386
TfiI GAWTC 2 cut(s) 11, 151
Tru1I TTAA 2 cut(s) 120, 210
Tru9I TTAA 2 cut(s) 120, 210
TscAI CASTG 1 cut(s) 267
TseFI GTSAC 2 cut(s) 98, 323
TseI GCWGC 2 cut(s) 175, 214
Tsp45I GTSAC 2 cut(s) 98, 323
TspDTI ATGAA 2 cut(s) 46, 437
TspRI CASTG 1 cut(s) 267
Vha464I CTTAAG 1 cut(s) 119
VpaK11BI GGWCC 2 cut(s) 236, 251
XapI RAATTY 1 cut(s) 386
XbaI TCTAGA 1 cut(s) 154
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.