FvH4_6g03140

PITH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013361
Physical Location & Seq
Reverse (-)
1754268 .. 1757589
3322 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03140.t1

Sequence Viewer

Length: 534 bp
ATGTCTGCCGAATCAGCCAACGCAATTCAGAGAAGCCAAGTTGATCTGATGGACTTAATAGATTGGTCTGGAGTTGAATGCCTCAACCAAAGCACCAGTCACTCTGTTGCTAACGCTCTCAAGCAGGGATACAGAGACGATGATGGTTTGAATCTAGAGAGTGATGCAGATGAGCAGCTTCTGATCTACATACCTTTTCTTCAAGTAATTAAGCTGCACTCAATTATCATCAAAGGACCTGAAGAGGATGGTCCCAAGACAGTGAAGCTTTTTTCAAACAAGGAGCACATGGGTTTCAGCAATGTCAATGACTACCCAGCAAGTGACACTGTTGTTTTATCCCCTGATGATCTCAAGGGAAAACCGGTTGTTTTGAAGTATGTCAAATTTCAAAATGTTCGCAGCTTGACAATTTTCATCGAGGATAATCAATCTGATTCAGAAGTCACAAAAGTTCAAAAGATTGGCCTGGTTGGAACAACGGTGGAAACAACTAACATGAAGGGTTTGAAGAAGATTGAGGATGGACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PITH

Protein Analysis

178

Amino Acids

19.59

Weight (kDa)

4.86

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PITH PF06201 8 - 173 2.4e-54 PITH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04780
fragaria_vesca FvH4_6g03140
malus_domestica MD04G1222600.v1.1 MD12G1238700.v1.1
prunus_persica Prupe.6G341600_v2.0.a1
pyrus_communis pycom04g19690 pycom12g21940
rosa_chinensis RchiOBHm_Chr3g0451391
rosa_laevigata RLG00000025663
rosa_multiflora Rmu_sc0021369.1_g000001
rosa_roxburghii Rroxscaffold_164G00436530 Rroxscaffold_6G00428810
rosa_rugosa Rorug02G0633500
rosa_samantha Rh3AG036500 Rh3BG037100 Rh3CG035700 Rh3DG036600
rosa_wichuraiana Rw3G002690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 1 cut(s) 261
AgeI ACCGGT 1 cut(s) 364
AgsI TTSAA 8 cut(s) 77, 151, 203, 276, 376, 392, 458, 511
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 4 cut(s) 178, 214, 268, 405
AluI AGCT 4 cut(s) 178, 214, 268, 405
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 129
AlwNI CAGNNNCTG 1 cut(s) 181
AoxI GGCC 1 cut(s) 466
ApeKI GCWGC 3 cut(s) 175, 214, 402
ApoI RAATTY 1 cut(s) 386
ArsI GACNNNNNNTTYG 2 cut(s) 82, 114
AsiGI ACCGGT 1 cut(s) 364
AspS9I GGNCC 2 cut(s) 236, 251
AvaII GGWCC 2 cut(s) 236, 251
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 3 cut(s) 187, 201, 414
BccI CCATC 4 cut(s) 43, 137, 242, 518
BciT130I CCWGG 1 cut(s) 470
BciVI GTATCC 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 1 cut(s) 155
BfuI GTATCC 1 cut(s) 122
BisI GCNGC 3 cut(s) 176, 215, 403
BlsI GCNGC 3 cut(s) 177, 216, 404
Bme1390I CCNGG 1 cut(s) 470
Bme18I GGWCC 2 cut(s) 236, 251
BmgT120I GGNCC 2 cut(s) 236, 251
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 90
BpuEI CTTGAG 2 cut(s) 104, 338
BsaWI WCCGGW 1 cut(s) 364
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 307
BseBI CCWGG 1 cut(s) 470
BseGI GGATG 2 cut(s) 253, 529
BseMI GCAATG 1 cut(s) 307
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 3 cut(s) 187, 201, 414
BseYI CCCAGC 1 cut(s) 316
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 1 cut(s) 468
BshTI ACCGGT 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 237
BsmAI GTCTC 1 cut(s) 129
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 83
BsnI GGCC 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 3 cut(s) 43, 183, 349
BspANI GGCC 1 cut(s) 468
BspLI GGNNCC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 364
BssMI GATC 3 cut(s) 43, 183, 349
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 3 cut(s) 262, 331, 484
Bst6I CTCTTC 1 cut(s) 237
BstF5I GGATG 2 cut(s) 253, 529
BstKTI GATC 3 cut(s) 46, 186, 352
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 3 cut(s) 43, 183, 349
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 468
BstV1I GCAGC 3 cut(s) 187, 201, 414
BsuI GTATCC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 468
BtsCI GGATG 2 cut(s) 253, 529
BtsIMutI CAGTG 3 cut(s) 267, 327, 529
CaiI CAGNNNCTG 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 236, 251
CspAI ACCGGT 1 cut(s) 364
CviAII CATG 2 cut(s) 289, 499
CviJI RGCY 7 cut(s) 17, 36, 178, 214, 268, 405, 468
CviKI_1 RGCY 7 cut(s) 17, 36, 178, 214, 268, 405, 468
DpnI GATC 3 cut(s) 45, 185, 351
DpnII GATC 3 cut(s) 43, 183, 349
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco47I GGWCC 2 cut(s) 236, 251
Eco57I CTGAAG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 468
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 2 cut(s) 292, 502
FaiI YATR 4 cut(s) 191, 290, 381, 500
FaqI GGGAC 1 cut(s) 237
FatI CATG 2 cut(s) 288, 498
Fnu4HI GCNGC 3 cut(s) 176, 215, 403
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 176, 215, 403
FspBI CTAG 1 cut(s) 155
GluI GCNGC 3 cut(s) 176, 215, 403
GsaI CCCAGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 1 cut(s) 468
HapII CCGG 1 cut(s) 365
Hin1II CATG 2 cut(s) 292, 502
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 3 cut(s) 11, 151, 437
HpaII CCGG 1 cut(s) 365
Hpy188I TCNGA 5 cut(s) 30, 48, 183, 436, 442
Hpy188III TCNNGA 2 cut(s) 69, 155
HpyAV CCTTC 1 cut(s) 496
HpyCH4III ACNGT 3 cut(s) 262, 331, 484
HpyCH4V TGCA 2 cut(s) 167, 217
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
Hsp92II CATG 2 cut(s) 292, 502
Kzo9I GATC 3 cut(s) 43, 183, 349
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 9 cut(s) 54, 109, 110, 252, 330, 357, 378, 455, 482
Lsp1109I GCAGC 3 cut(s) 187, 201, 414
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 155
MaeIII GTNAC 3 cut(s) 98, 323, 445
MalI GATC 3 cut(s) 45, 185, 351
MboI GATC 3 cut(s) 43, 183, 349
MboII GAAGA 4 cut(s) 191, 254, 523, 526
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 5 cut(s) 24, 207, 222, 386, 411
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 4 cut(s) 92, 238, 415, 514
MseI TTAA 2 cut(s) 56, 210
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 470
Mva1269I GAATGC 1 cut(s) 83
MvaI CCWGG 1 cut(s) 470
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 3 cut(s) 43, 183, 349
NlaIII CATG 2 cut(s) 292, 502
NlaIV GGNNCC 1 cut(s) 253
NmuCI GTSAC 3 cut(s) 98, 323, 445
PctI GAATGC 1 cut(s) 83
PfeI GAWTC 3 cut(s) 11, 151, 437
PinAI ACCGGT 1 cut(s) 364
PkrI GCNGC 3 cut(s) 177, 216, 404
PpuMI RGGWCCY 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 468
PspFI CCCAGC 1 cut(s) 316
PspGI CCWGG 1 cut(s) 468
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 2 cut(s) 236, 251
PspPPI RGGWCCY 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 181
SaqAI TTAA 2 cut(s) 56, 210
SatI GCNGC 3 cut(s) 176, 215, 403
Sau3AI GATC 3 cut(s) 43, 183, 349
Sau96I GGNCC 2 cut(s) 236, 251
ScrFI CCNGG 1 cut(s) 470
SduI GDGCHC 1 cut(s) 288
SetI ASST 6 cut(s) 180, 196, 216, 241, 270, 407
SfaNI GCATC 1 cut(s) 154
SinI GGWCC 2 cut(s) 236, 251
SmlI CTYRAG 2 cut(s) 119, 353
SmoI CTYRAG 2 cut(s) 119, 353
Sse9I AATT 5 cut(s) 24, 207, 222, 386, 411
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 468
TaaI ACNGT 3 cut(s) 262, 331, 484
TaqI TCGA 1 cut(s) 420
TasI AATT 5 cut(s) 24, 207, 222, 386, 411
TfiI GAWTC 3 cut(s) 11, 151, 437
Tru1I TTAA 2 cut(s) 56, 210
Tru9I TTAA 2 cut(s) 56, 210
TscAI CASTG 2 cut(s) 267, 334
TseFI GTSAC 3 cut(s) 98, 323, 445
TseI GCWGC 3 cut(s) 175, 214, 402
Tsp45I GTSAC 3 cut(s) 98, 323, 445
TspDTI ATGAA 2 cut(s) 406, 515
TspRI CASTG 2 cut(s) 267, 334
VpaK11BI GGWCC 2 cut(s) 236, 251
XapI RAATTY 1 cut(s) 386
XbaI TCTAGA 1 cut(s) 154
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.