Prupe.6G341600_v2.0.a1

PITH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013361
Physical Location & Seq
Forward (+)
29481071 .. 29484297
3227 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G341600.1

Sequence Viewer

Length: 534 bp
ATGTCTGCAGAATCAGCCAGTGCAATTCAAAGAAACCAAGTTGATCTATTGGACTTCATAGATTGGTCTGGAGTTGAATGCCTCAACCAAAGCACTAGTCACTCTGTTGCCAACGCTCTCAAGCAGGGTTATAGAGAAGATGATGGTTTGAATCTGGAGAGTGATGCAGATGAGCAGCTTTTGCTTTACATACCTTTTCTTCAAGTCATTAAGCTGCATTCTATTGTCATCAAAGGACCTGAAGAGGAAGGTCCTAAGACGGTGAAACTTTTTTCAAACAAGGAGCATATGGGGTTCAGCAATGTCAATGACTTCCCAGGAAGTGATACACTTGATTTATCCCCTGAGAATCTAAAGGGCAAACCAGTTGTCTTAAAGTATGTCAAATTTCAAAATGTTCGCAGCTTGACGATCTTTATTGAGGATAATCAATCTGGCTCCGAACTCACAAAAGTTCAAAAGATTGTTCTGTGTGGAACAACGGTGGAAACTACAGACATGAAGGGCTTGAAGAAGATTGAAGACGGACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PITH

Protein Analysis

178

Amino Acids

19.64

Weight (kDa)

4.9

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04780
fragaria_vesca FvH4_6g03140
malus_domestica MD04G1222600.v1.1 MD12G1238700.v1.1
prunus_persica Prupe.6G341600_v2.0.a1
pyrus_communis pycom04g19690 pycom12g21940
rosa_chinensis RchiOBHm_Chr3g0451391
rosa_laevigata RLG00000025663
rosa_multiflora Rmu_sc0021369.1_g000001
rosa_roxburghii Rroxscaffold_164G00436530 Rroxscaffold_6G00428810
rosa_rugosa Rorug02G0633500
rosa_samantha Rh3AG036500 Rh3BG037100 Rh3CG035700 Rh3DG036600
rosa_wichuraiana Rw3G002690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 1 cut(s) 261
AgsI TTSAA 9 cut(s) 29, 77, 151, 203, 276, 392, 458, 511, 521
AhlI ACTAGT 1 cut(s) 95
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 3 cut(s) 178, 214, 405
AluI AGCT 3 cut(s) 178, 214, 405
ApeKI GCWGC 3 cut(s) 175, 214, 402
ApoI RAATTY 1 cut(s) 386
ArsI GACNNNNNNTTYG 4 cut(s) 82, 114, 354, 386
AspS9I GGNCC 2 cut(s) 236, 251
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 2 cut(s) 236, 251
BbsI GAAGAC 1 cut(s) 528
BbvI GCAGC 3 cut(s) 187, 201, 414
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 318
BcuI ACTAGT 1 cut(s) 95
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 2 cut(s) 6, 492
BisI GCNGC 3 cut(s) 176, 215, 403
BlsI GCNGC 3 cut(s) 177, 216, 404
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 2 cut(s) 236, 251
BmgT120I GGNCC 2 cut(s) 236, 251
BmiI GGNNCC 1 cut(s) 439
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 528
BpmI CTGGAG 2 cut(s) 90, 176
BpuEI CTTGAG 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 316
Bse1I ACTGG 2 cut(s) 18, 365
Bse3DI GCAATG 1 cut(s) 307
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 316
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 2 cut(s) 18, 365
BseXI GCAGC 3 cut(s) 187, 201, 414
BsmI GAATGC 2 cut(s) 83, 217
Bsp143I GATC 2 cut(s) 43, 411
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 439
BspMAI CTGCAG 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 307
BsrI ACTGG 2 cut(s) 18, 365
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 2 cut(s) 43, 411
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 262, 484
Bst6I CTCTTC 1 cut(s) 237
BstAPI GCANNNNNTGC 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 255, 345
BstKTI GATC 2 cut(s) 46, 414
BstMBI GATC 2 cut(s) 43, 411
BstMWI GCNNNNNNNGC 2 cut(s) 14, 181
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 2 cut(s) 6, 492
BstV1I GCAGC 3 cut(s) 187, 201, 414
BstV2I GAAGAC 1 cut(s) 528
BtsIMutI CAGTG 2 cut(s) 25, 529
Cfr13I GGNCC 2 cut(s) 236, 251
CviAII CATG 1 cut(s) 499
CviJI RGCY 6 cut(s) 17, 178, 214, 405, 438, 507
CviKI_1 RGCY 6 cut(s) 17, 178, 214, 405, 438, 507
DdeI CTNAG 2 cut(s) 255, 345
DpnI GATC 2 cut(s) 45, 413
DpnII GATC 2 cut(s) 43, 411
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco47I GGWCC 2 cut(s) 236, 251
Eco57I CTGAAG 1 cut(s) 261
EcoO109I RGGNCCY 2 cut(s) 236, 251
EcoRII CCWGG 1 cut(s) 316
FaeI CATG 1 cut(s) 502
FaiI YATR 7 cut(s) 59, 132, 191, 288, 290, 381, 500
FatI CATG 1 cut(s) 498
FauNDI CATATG 1 cut(s) 288
Fnu4HI GCNGC 3 cut(s) 176, 215, 403
Fsp4HI GCNGC 3 cut(s) 176, 215, 403
FspBI CTAG 1 cut(s) 96
GluI GCNGC 3 cut(s) 176, 215, 403
GsuI CTGGAG 2 cut(s) 90, 176
Hin1II CATG 1 cut(s) 502
HinfI GANTC 3 cut(s) 11, 151, 349
HphI GGTGA 1 cut(s) 274
Hpy188I TCNGA 1 cut(s) 442
Hpy188III TCNNGA 2 cut(s) 69, 155
HpyAV CCTTC 2 cut(s) 242, 496
HpyCH4III ACNGT 2 cut(s) 262, 484
HpyCH4V TGCA 4 cut(s) 8, 23, 167, 217
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 181
HpyF3I CTNAG 2 cut(s) 255, 345
Hsp92II CATG 1 cut(s) 502
Kzo9I GATC 2 cut(s) 43, 411
LmnI GCTCC 2 cut(s) 283, 443
Lsp1109I GCAGC 3 cut(s) 187, 201, 414
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 98
MalI GATC 2 cut(s) 45, 413
MboI GATC 2 cut(s) 43, 411
MboII GAAGA 6 cut(s) 149, 191, 254, 523, 526, 533
MluCI AATT 2 cut(s) 24, 386
MnlI CCTC 3 cut(s) 92, 238, 415
MseI TTAA 2 cut(s) 210, 374
MspR9I CCNGG 1 cut(s) 318
Mva1269I GAATGC 2 cut(s) 83, 217
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 14, 181
NdeI CATATG 1 cut(s) 288
NdeII GATC 2 cut(s) 43, 411
NlaIII CATG 1 cut(s) 502
NlaIV GGNNCC 1 cut(s) 439
NmuCI GTSAC 1 cut(s) 98
PctI GAATGC 2 cut(s) 83, 217
PfeI GAWTC 3 cut(s) 11, 151, 349
PkrI GCNGC 3 cut(s) 177, 216, 404
PpuMI RGGWCCY 2 cut(s) 236, 251
Psp5II RGGWCCY 2 cut(s) 236, 251
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 439
PspPI GGNCC 2 cut(s) 236, 251
PspPPI RGGWCCY 2 cut(s) 236, 251
PstI CTGCAG 1 cut(s) 10
SaqAI TTAA 2 cut(s) 210, 374
SatI GCNGC 3 cut(s) 176, 215, 403
Sau3AI GATC 2 cut(s) 43, 411
Sau96I GGNCC 2 cut(s) 236, 251
ScrFI CCNGG 1 cut(s) 318
SetI ASST 6 cut(s) 180, 196, 216, 241, 253, 407
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 2 cut(s) 6, 492
SinI GGWCC 2 cut(s) 236, 251
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SpeI ACTAGT 1 cut(s) 95
Sse9I AATT 2 cut(s) 24, 386
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 316
TaaI ACNGT 2 cut(s) 262, 484
TasI AATT 2 cut(s) 24, 386
TfiI GAWTC 3 cut(s) 11, 151, 349
Tru1I TTAA 2 cut(s) 210, 374
Tru9I TTAA 2 cut(s) 210, 374
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 3 cut(s) 175, 214, 402
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 46, 515
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 2 cut(s) 236, 251
XapI RAATTY 1 cut(s) 386
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.