Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010058

Physical Location & Seq

Genomic Coordinates Forward (+)

1492084 .. 1495397

Gene Structure 3314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCATACTTTTGGTTACAGAGCAAATGCTCTGCTCACTTTCGCAGTCACGGCTCTTGCTTTCATTTGCGCAATCGCGTCCTTCTCAGACAAATTCAGCAACCAAAATCCTTCTGCTGAGATCCAGATACTTAATATCAATCGGTTTAAGAAGCAATCTCATGGTAACGATGAGGTCAGCTTGACACTGGACATATCAGCAGACTTGCAATCACTTTTTACTTGGAACACCAAACAGGTTTTTGTTTTCGTAGCAGCAGAGTATGAAACCCCAAAGAATTCCCTGAATCAGGTTTCTCTATGGGATGCCATTATTCCTGCCAAGGAACATGCCAAATTCCGGATTCAAGTCTCAAACAAGTACCGTTTCATCGATCAGGGACAGAATCTTCGGGGCAAAGACTTCAACTTGACATTACACTGGCATGTCATGCCCAAGACCGGGAAGATGTTTGCTGACAAGATAGTCTTGCCTGGTTACAGTTTACCAGATGCATACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0005911 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009506 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0030054 GO:0030312 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0055044 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC22

Protein Analysis

167

Amino Acids

19.02

Weight (kDa)

9.21

Isoelectric Point (pI)

27.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC22	PF04573	1 - 164	2.5e-56	Signal peptidase subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05230 AT3G05230 AT5G27430
fragaria_vesca	FvH4_6g05520
malus_domestica	MD04G1208000.v1.1 MD12G1222000.v1.1
prunus_persica	Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1
pyrus_communis	pycom04g18410 pycom12g20820
rosa_chinensis	RchiOBHm_Chr3g0454281
rosa_laevigata	RLG00000025466
rosa_multiflora	Rmu_sc0005231.1_g000002
rosa_roxburghii	Rroxscaffold_165G00437100 Rroxscaffold_6G00425240
rosa_rugosa	Rorug02G0654000
rosa_samantha	Rh3BG059500 Rh3CG058700 Rh3DG060000
rosa_wichuraiana	Rw3G004430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
Acc16I	TGCGCA	1 cut(s)	70
AccII	CGCG	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	339
AclWI	GGATC	1 cut(s)	115
AcsI	RAATTY	3 cut(s)	92, 277, 335
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	4 cut(s)	289, 339, 440, 441
AgsI	TTSAA	2 cut(s)	347, 406
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	1 cut(s)	115
Aor13HI	TCCGGA	1 cut(s)	339
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	3 cut(s)	92, 277, 335
ArsI	GACNNNNNNTTYG	2 cut(s)	372, 404
AspLEI	GCGC	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	66
BciT130I	CCWGG	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	442
BcoDI	GTCTC	1 cut(s)	355
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	2 cut(s)	442, 474
BmrFI	CCNGG	2 cut(s)	442, 474
BmsI	GCATC	2 cut(s)	295, 481
BpuMI	CCSGG	1 cut(s)	442
Bsa29I	ATCGAT	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	321
BsaWI	WCCGGW	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 339, 440, 441
Bse1I	ACTGG	2 cut(s)	192, 425
BseAI	TCCGGA	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	474
BseCI	ATCGAT	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	4 cut(s)	289, 339, 440, 441
BseMII	CTCAG	2 cut(s)	99, 108
BseNI	ACTGG	2 cut(s)	192, 425
BseXI	GCAGC	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	77
BshVI	ATCGAT	1 cut(s)	372
BsiSI	CCGG	2 cut(s)	340, 441
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	4 cut(s)	289, 339, 440, 441
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	393
Bsp13I	TCCGGA	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	120, 373
BspCNI	CTCAG	2 cut(s)	98, 109
BspDI	ATCGAT	1 cut(s)	372
BspEI	TCCGGA	1 cut(s)	339
BspFNI	CGCG	1 cut(s)	77
BspPI	GGATC	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	192, 425
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	2 cut(s)	120, 373
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	365, 482
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstDEI	CTNAG	2 cut(s)	85, 117
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	2 cut(s)	123, 376
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	2 cut(s)	120, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 430
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	2 cut(s)	332, 428
BstSCI	CCNGG	2 cut(s)	440, 472
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
Bsu15I	ATCGAT	1 cut(s)	372
BsuTUI	ATCGAT	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	2 cut(s)	185, 418
CfoI	GCGC	1 cut(s)	71
ClaI	ATCGAT	1 cut(s)	372
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	4 cut(s)	161, 329, 425, 430
CviJI	RGCY	2 cut(s)	53, 180
CviKI_1	RGCY	2 cut(s)	53, 180
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	2 cut(s)	85, 117
DpnI	GATC	2 cut(s)	122, 375
DpnII	GATC	2 cut(s)	120, 373
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	321
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	321
EcoT22I	ATGCAT	2 cut(s)	6, 496
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	4 cut(s)	164, 332, 428, 433
FaiI	YATR	9 cut(s)	6, 162, 194, 264, 301, 330, 426, 431, 496
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	4 cut(s)	160, 328, 424, 429
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	255
FspI	TGCGCA	1 cut(s)	70
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	1 cut(s)	255
HapII	CCGG	2 cut(s)	340, 441
HgaI	GACGC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	4 cut(s)	164, 332, 428, 433
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HinfI	GANTC	3 cut(s)	286, 343, 385
HpaII	CCGG	2 cut(s)	340, 441
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	2 cut(s)	124, 340
Hpy8I	GTNNAC	1 cut(s)	485
HpyAV	CCTTC	2 cut(s)	91, 120
HpyCH4III	ACNGT	2 cut(s)	365, 482
HpyCH4V	TGCA	3 cut(s)	4, 208, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 430
HpyF3I	CTNAG	2 cut(s)	85, 117
Hsp92II	CATG	4 cut(s)	164, 332, 428, 433
HspAI	GCGC	1 cut(s)	69
Kpn2I	TCCGGA	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	120, 373
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	2 cut(s)	295, 481
MaeIII	GTNAC	4 cut(s)	14, 46, 164, 476
MalI	GATC	2 cut(s)	122, 375
MboI	GATC	2 cut(s)	120, 373
MboII	GAAGA	2 cut(s)	380, 457
MflI	RGATCY	1 cut(s)	120
MluCI	AATT	3 cut(s)	92, 277, 335
MnlI	CCTC	1 cut(s)	166
Mph1103I	ATGCAT	2 cut(s)	6, 496
MroI	TCCGGA	1 cut(s)	339
MseI	TTAA	2 cut(s)	132, 147
MslI	CAYNNNNRTG	2 cut(s)	423, 499
MspI	CCGG	2 cut(s)	340, 441
MspR9I	CCNGG	2 cut(s)	442, 474
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	50, 430
NciI	CCSGG	1 cut(s)	442
NdeII	GATC	2 cut(s)	120, 373
NlaIII	CATG	4 cut(s)	164, 332, 428, 433
NmuCI	GTSAC	1 cut(s)	46
NsbI	TGCGCA	1 cut(s)	70
NsiI	ATGCAT	2 cut(s)	6, 496
NspI	RCATGY	2 cut(s)	332, 428
PfeI	GAWTC	3 cut(s)	286, 343, 385
PkrI	GCNGC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	120
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	2 cut(s)	423, 499
SaqAI	TTAA	2 cut(s)	132, 147
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	120, 373
ScrFI	CCNGG	2 cut(s)	442, 474
SetI	ASST	4 cut(s)	177, 182, 240, 294
SfaNI	GCATC	2 cut(s)	295, 481
SmiMI	CAYNNNNRTG	2 cut(s)	423, 499
Sse9I	AATT	3 cut(s)	92, 277, 335
StyD4I	CCNGG	2 cut(s)	440, 472
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	365, 482
TaqI	TCGA	1 cut(s)	372
TasI	AATT	3 cut(s)	92, 277, 335
TfiI	GAWTC	3 cut(s)	286, 343, 385
Tru1I	TTAA	2 cut(s)	132, 147
Tru9I	TTAA	2 cut(s)	132, 147
TscAI	CASTG	2 cut(s)	192, 425
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	52, 279, 358
TspRI	CASTG	2 cut(s)	192, 425
XagI	CCTNNNNNAGG	1 cut(s)	287
XapI	RAATTY	3 cut(s)	92, 277, 335
XceI	RCATGY	2 cut(s)	332, 428
Zsp2I	ATGCAT	2 cut(s)	6, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.