Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010058

Physical Location & Seq

Genomic Coordinates Forward (+)

4456707 .. 4460245

Gene Structure 3539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42130

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTTATGTGATTTATTTACACACAGACTAAAACCAGTCTTCGTTTCTTCAAAGCCCCCAAAAAAAAAAACAAAAAACGCACATCTCTCTCTCTCGGACCAAAAACTCCAGAAAATAACCAGAAGAATCCCAAAAGAGAGAAAGAAGAAGATGCATTCTTTTGGGTACAGAGCCAATGCTTTGCTCACCTTCGCGGTCACAATTCTCGCCCTCATGTGCGCCATGGCCTCCATGTCTGACAATTTCAACACCCCATCTCCCACTTCTCAAGTCCAGGTGCTGAATATCAATTGGTTTCAGAAGCAACCAAATGGGAACGACGAGGTCAGCATGACACTGAATATATCAGCAGACTTGCAGTCATTGTTTACATGGAACACAAAGCAGGTTTTTGTTTTTCTAGCTGCTGAGTATGAAACCCCGAAGAATGCATTGAATCAGATCTCTCTTTGGGATGGTATCATACCTTCCCAAGAGCATGCCAAGTTTTGGATTCATACTTCAAACAAATACCGTTTTGTTGATCAGGGAAGCAATCTCCGAGGTAAAGAATTCAACTTGACATTGCACTGGCATGTCATGCCCAAGACGGGAAAAATGTTTGCTGACAAGATGGTCATGTCTGGATATCGCTTGCCACAAGAATATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0030312 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC22

Protein Analysis

217

Amino Acids

25.1

Weight (kDa)

9.94

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC22	PF04573	51 - 215	1.3e-55	Signal peptidase subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05230 AT3G05230 AT5G27430
fragaria_vesca	FvH4_6g05520
malus_domestica	MD04G1208000.v1.1 MD12G1222000.v1.1
prunus_persica	Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1
pyrus_communis	pycom04g18410 pycom12g20820
rosa_chinensis	RchiOBHm_Chr3g0454281
rosa_laevigata	RLG00000025466
rosa_multiflora	Rmu_sc0005231.1_g000002
rosa_roxburghii	Rroxscaffold_165G00437100 Rroxscaffold_6G00425240
rosa_rugosa	Rorug02G0654000
rosa_samantha	Rh3BG059500 Rh3CG058700 Rh3DG060000
rosa_wichuraiana	Rw3G004430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	614
Acc36I	ACCTGC	1 cut(s)	376
AccB7I	CCANNNNNTGG	1 cut(s)	489
AccII	CGCG	1 cut(s)	194
AciI	CCGC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	551
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	489, 590
AgsI	TTSAA	5 cut(s)	51, 247, 436, 504, 556
AhdI	GACNNNNNGTC	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	1 cut(s)	404
AluI	AGCT	1 cut(s)	404
AlwNI	CAGNNNCTG	1 cut(s)	280
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	551
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	97
BarI	GAAGNNNNNNTAC	2 cut(s)	451, 483
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	3 cut(s)	262, 449, 607
BciT130I	CCWGG	1 cut(s)	275
BclI	TGATCA	1 cut(s)	523
BfaI	CTAG	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	441
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	97
BmeRI	GACNNNNNGTC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	222, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	2 cut(s)	489, 590
Bse1I	ACTGG	2 cut(s)	35, 575
Bse3DI	GCAATG	1 cut(s)	563
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	222, 541
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	489, 590
BseMI	GCAATG	1 cut(s)	563
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	2 cut(s)	35, 575
BseXI	GCAGC	1 cut(s)	391
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	489, 590
BsmI	GAATGC	2 cut(s)	154, 433
BsnI	GGCC	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	441, 523
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	194
BspMI	ACCTGC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	563
BsrI	ACTGG	2 cut(s)	35, 575
BssECI	CCNNGG	2 cut(s)	222, 541
BssMI	GATC	2 cut(s)	441, 523
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	515
BstAPI	GCANNNNNTGC	1 cut(s)	580
BstC8I	GCNNGC	2 cut(s)	480, 635
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	2 cut(s)	444, 526
BstMBI	GATC	2 cut(s)	441, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	580
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	2 cut(s)	482, 578
BstSCI	CCNGG	1 cut(s)	273
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	335, 568
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	2 cut(s)	480, 635
CaiI	CAGNNNCTG	1 cut(s)	280
CfoI	GCGC	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	9 cut(s)	214, 223, 232, 331, 372, 479, 575, 580, 619
CviJI	RGCY	4 cut(s)	55, 173, 227, 404
CviKI_1	RGCY	4 cut(s)	55, 173, 227, 404
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	2 cut(s)	443, 525
DpnII	GATC	2 cut(s)	441, 523
DrdI	GACNNNNNNGTC	1 cut(s)	614
DriI	GACNNNNNGTC	1 cut(s)	358
DseDI	GACNNNNNNGTC	1 cut(s)	614
Eam1105I	GACNNNNNGTC	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	222
Eco32I	GATATC	1 cut(s)	629
Eco47I	GGWCC	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	273
EcoRV	GATATC	1 cut(s)	629
EcoT14I	CCWWGG	1 cut(s)	222
EcoT22I	ATGCAT	2 cut(s)	156, 433
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	9 cut(s)	217, 226, 235, 334, 375, 482, 578, 583, 622
FatI	CATG	9 cut(s)	213, 222, 231, 330, 371, 478, 574, 579, 618
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	9 cut(s)	217, 226, 235, 334, 375, 482, 578, 583, 622
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	3 cut(s)	126, 436, 493
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	369
Hpy188I	TCNGA	5 cut(s)	97, 238, 300, 441, 542
Hpy188III	TCNNGA	2 cut(s)	109, 624
Hpy8I	GTNNAC	1 cut(s)	369
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	2 cut(s)	199, 477
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4V	TGCA	4 cut(s)	154, 358, 431, 568
HpyF10VI	GCNNNNNNNGC	1 cut(s)	580
HpyF3I	CTNAG	1 cut(s)	408
Hsp92II	CATG	9 cut(s)	217, 226, 235, 334, 375, 482, 578, 583, 622
HspAI	GCGC	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	441, 523
LpnPI	CCDG	9 cut(s)	48, 122, 133, 260, 287, 371, 512, 556, 609
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	401
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	443, 525
MboI	GATC	2 cut(s)	441, 523
MboII	GAAGA	6 cut(s)	31, 39, 135, 157, 160, 436
MfeI	CAATTG	1 cut(s)	289
MflI	RGATCY	1 cut(s)	441
MluCI	AATT	4 cut(s)	201, 241, 289, 551
MnlI	CCTC	4 cut(s)	221, 238, 316, 536
Mph1103I	ATGCAT	2 cut(s)	156, 433
MslI	CAYNNNNRTG	1 cut(s)	573
MspR9I	CCNGG	1 cut(s)	275
MunI	CAATTG	1 cut(s)	289
Mva1269I	GAATGC	2 cut(s)	154, 433
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	580
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	2 cut(s)	441, 523
NlaIII	CATG	9 cut(s)	217, 226, 235, 334, 375, 482, 578, 583, 622
NmuCI	GTSAC	1 cut(s)	196
NsiI	ATGCAT	2 cut(s)	156, 433
NspI	RCATGY	2 cut(s)	482, 578
PaeI	GCATGC	1 cut(s)	482
PctI	GAATGC	2 cut(s)	154, 433
PfeI	GAWTC	3 cut(s)	126, 436, 493
PflFI	GACNNNGTC	1 cut(s)	323
PflMI	CCANNNNNTGG	1 cut(s)	489
PkrI	GCNGC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	441
PsyI	GACNNNGTC	1 cut(s)	323
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	573
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	2 cut(s)	441, 523
Sau96I	GGNCC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	275
SetI	ASST	7 cut(s)	191, 279, 327, 390, 406, 469, 547
SfaNI	GCATC	1 cut(s)	141
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
SphI	GCATGC	1 cut(s)	482
Sse9I	AATT	4 cut(s)	201, 241, 289, 551
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	515
TasI	AATT	4 cut(s)	201, 241, 289, 551
TfiI	GAWTC	3 cut(s)	126, 436, 493
TscAI	CASTG	2 cut(s)	342, 575
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	429, 485
TspRI	CASTG	2 cut(s)	342, 575
Tth111I	GACNNNGTC	1 cut(s)	323
Van91I	CCANNNNNTGG	1 cut(s)	489
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	551
XceI	RCATGY	2 cut(s)	482, 578
XspI	CTAG	1 cut(s)	401
Zsp2I	ATGCAT	2 cut(s)	156, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.