Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010058

Physical Location & Seq

Genomic Coordinates Reverse (-)

20425841 .. 20428489

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18410.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAATGAAAAAACCCCTCAAGTCTTCGTTTCTTCAAAACCCCCCCCAAAAACGCACTCAACATTTTCCCTTCTTCCTATCTGTCTTCTCGGACCAAAACCTGAAGAACCAGAAATCCAAGGAGAAAAAAAAAAAAAATCCCAGAACGAGAACAAAATGCATTCGTTTGGGTACAGAGCCAATGCTCTGCTGACCTTCGCAGTCACAATTTTGGCTCTGATGTGCGCCATGGCCTCCATCTCCGATAATCTCAACCACCCCACTCCCACTACCCAAGTCCAGGTGTTGAACATCAATTGGTTTCAGAAGCAACCAAATGGGAACGAGGAGGTCAGCATGACTATGAATATATCAGCAGATTTGCAGTCATTGTTTACATGGAACACAAAGCAGGTTTTTGTTTTTCTAGCCGCTGAGTATGGAACCCCAAAGAACTCACTGAATCAGATTTCTCTTTGGGATGGTATCTTACCAACAAAAGAACATGCCAAGTTTTGGATTCATACTTCAAACAAGTACCGTTTCATTGATCAGGGAACCAATCTCCGAGGTAAAGAATTCAACTTGACGTTGCACTGGCATGTGATGCCCAAGACGGGCAAAATGTTCGCCGACAAGATCGTCATGCCGGGATATCGCTTGCCACAGGAGTACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0030312 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC22

Protein Analysis

220

Amino Acids

25.04

Weight (kDa)

9.37

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05230 AT3G05230 AT5G27430
fragaria_vesca	FvH4_6g05520
malus_domestica	MD04G1208000.v1.1 MD12G1222000.v1.1
prunus_persica	Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1
pyrus_communis	pycom04g18410 pycom12g20820
rosa_chinensis	RchiOBHm_Chr3g0454281
rosa_laevigata	RLG00000025466
rosa_multiflora	Rmu_sc0005231.1_g000002
rosa_roxburghii	Rroxscaffold_165G00437100 Rroxscaffold_6G00425240
rosa_rugosa	Rorug02G0654000
rosa_samantha	Rh3BG059500 Rh3CG058700 Rh3DG060000
rosa_wichuraiana	Rw3G004430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	620
Acc36I	ACCTGC	1 cut(s)	382
AccB7I	CCANNNNNTGG	1 cut(s)	495
AciI	CCGC	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	3 cut(s)	173, 518, 653
AfiI	CCNNNNNNNGG	3 cut(s)	280, 495, 596
AgsI	TTSAA	4 cut(s)	36, 289, 510, 562
AjnI	CCWGG	1 cut(s)	279
AloI	GAACNNNNNNTCC	2 cut(s)	99, 131
AoxI	GGCC	1 cut(s)	231
ApoI	RAATTY	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	92
AsuC2I	CCSGG	1 cut(s)	630
AvaII	GGWCC	1 cut(s)	92
BbsI	GAAGAC	2 cut(s)	16, 77
BccI	CCATC	2 cut(s)	245, 455
BcgI	CGANNNNNNTGC	2 cut(s)	589, 623
BciT130I	CCWGG	1 cut(s)	281
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	630
BfaI	CTAG	1 cut(s)	407
BfuAI	ACCTGC	1 cut(s)	382
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
Bme1390I	CCNGG	2 cut(s)	281, 630
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	2 cut(s)	424, 538
BmrFI	CCNGG	2 cut(s)	281, 630
BmsI	GCATC	1 cut(s)	576
BpiI	GAAGAC	2 cut(s)	16, 77
BpuMI	CCSGG	1 cut(s)	630
BsaJI	CCNNGG	3 cut(s)	118, 228, 547
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 495, 596
Bse1I	ACTGG	1 cut(s)	581
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	3 cut(s)	118, 228, 547
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	3 cut(s)	280, 495, 596
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	1 cut(s)	581
BseRI	GAGGAG	1 cut(s)	341
BshFI	GGCC	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	629
BslI	CCNNNNNNNGG	3 cut(s)	280, 495, 596
BsmI	GAATGC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	529, 618
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	1 cut(s)	411
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	424, 538
BspMI	ACCTGC	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	581
BssECI	CCNNGG	3 cut(s)	118, 228, 547
BssMI	GATC	2 cut(s)	529, 618
BssT1I	CCWWGG	2 cut(s)	118, 228
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	521
BstAPI	GCANNNNNTGC	1 cut(s)	586
BstC8I	GCNNGC	1 cut(s)	641
BstDEI	CTNAG	1 cut(s)	414
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	466
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	2 cut(s)	532, 621
BstMBI	GATC	2 cut(s)	529, 618
BstMWI	GCNNNNNNNGC	1 cut(s)	586
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	2 cut(s)	488, 584
BstSCI	CCNGG	2 cut(s)	279, 628
BstV2I	GAAGAC	2 cut(s)	16, 77
BsuRI	GGCC	1 cut(s)	233
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	466
BtsIMutI	CAGTG	2 cut(s)	437, 574
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	641
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	172, 517, 652
CviAII	CATG	6 cut(s)	229, 337, 378, 485, 581, 625
CviJI	RGCY	4 cut(s)	179, 215, 233, 410
CviKI_1	RGCY	4 cut(s)	179, 215, 233, 410
CviQI	GTAC	3 cut(s)	172, 517, 652
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	2 cut(s)	531, 620
DpnII	GATC	2 cut(s)	529, 618
DrdI	GACNNNNNNGTC	1 cut(s)	620
DseDI	GACNNNNNNGTC	1 cut(s)	620
Eco130I	CCWWGG	2 cut(s)	118, 228
Eco32I	GATATC	1 cut(s)	635
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	123
EcoRI	GAATTC	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	279
EcoRV	GATATC	1 cut(s)	635
EcoT14I	CCWWGG	2 cut(s)	118, 228
EcoT22I	ATGCAT	1 cut(s)	162
ErhI	CCWWGG	2 cut(s)	118, 228
FaeI	CATG	6 cut(s)	232, 340, 381, 488, 584, 628
FatI	CATG	6 cut(s)	228, 336, 377, 484, 580, 624
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	1 cut(s)	629
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	6 cut(s)	232, 340, 381, 488, 584, 628
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	2 cut(s)	442, 499
HpaII	CCGG	1 cut(s)	629
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	6 cut(s)	92, 219, 244, 306, 447, 548
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	2 cut(s)	80, 205
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4IV	ACGT	1 cut(s)	569
HpyCH4V	TGCA	3 cut(s)	160, 364, 574
HpyF10VI	GCNNNNNNNGC	1 cut(s)	586
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	569
Hsp92II	CATG	6 cut(s)	232, 340, 381, 488, 584, 628
HspAI	GCGC	1 cut(s)	225
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	2 cut(s)	529, 618
LweI	GCATC	1 cut(s)	576
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	1 cut(s)	569
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	2 cut(s)	531, 620
MboI	GATC	2 cut(s)	529, 618
MboII	GAAGA	5 cut(s)	16, 24, 65, 77, 116
MfeI	CAATTG	1 cut(s)	295
MluCI	AATT	3 cut(s)	207, 295, 557
MnlI	CCTC	5 cut(s)	27, 244, 319, 322, 542
Mph1103I	ATGCAT	1 cut(s)	162
MslI	CAYNNNNRTG	2 cut(s)	341, 579
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	1 cut(s)	629
MspR9I	CCNGG	2 cut(s)	281, 630
MunI	CAATTG	1 cut(s)	295
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	586
NciI	CCSGG	1 cut(s)	630
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	2 cut(s)	529, 618
NlaIII	CATG	6 cut(s)	232, 340, 381, 488, 584, 628
NlaIV	GGNNCC	2 cut(s)	424, 538
NmuCI	GTSAC	1 cut(s)	202
NsiI	ATGCAT	1 cut(s)	162
NspI	RCATGY	2 cut(s)	488, 584
PctI	GAATGC	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	442, 499
PflMI	CCANNNNNTGG	1 cut(s)	495
PkrI	GCNGC	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	424, 538
PspPI	GGNCC	1 cut(s)	92
RsaI	GTAC	3 cut(s)	173, 518, 653
RsaNI	GTAC	3 cut(s)	172, 517, 652
RseI	CAYNNNNRTG	2 cut(s)	341, 579
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	2 cut(s)	529, 618
Sau96I	GGNCC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	281, 630
SetI	ASST	7 cut(s)	103, 197, 285, 333, 396, 553, 572
SfaNI	GCATC	1 cut(s)	576
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	2 cut(s)	341, 579
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
Sse9I	AATT	3 cut(s)	207, 295, 557
SsiI	CCGC	1 cut(s)	411
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	2 cut(s)	279, 628
StyI	CCWWGG	2 cut(s)	118, 228
TaaI	ACNGT	1 cut(s)	521
TaiI	ACGT	1 cut(s)	572
TasI	AATT	3 cut(s)	207, 295, 557
TatI	WGTACW	1 cut(s)	651
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	2 cut(s)	442, 499
TscAI	CASTG	2 cut(s)	444, 581
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	5 cut(s)	17, 21, 359, 491, 514
TspRI	CASTG	2 cut(s)	444, 581
Van91I	CCANNNNNTGG	1 cut(s)	495
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	1 cut(s)	557
XceI	RCATGY	2 cut(s)	488, 584
XspI	CTAG	1 cut(s)	407
Zsp2I	ATGCAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.