Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010058

Physical Location & Seq

Genomic Coordinates Forward (+)

9687339 .. 9690355

Gene Structure 3017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCATTCTTTTGGTTACAGAGCGAATGCTCTACTCACATTCGCCGTCACGATTCTAGCTTTCATTTGCGCGATTGCTTCCTTCTCTGATAACTTCAGTAACCAAAATCCCTCTGCTCAGATCCAGATATTGAATATCAATTGGTTTCAGAAGCAACCTCATGGAAATGATGAGGTCAGCTTGACACTGAACATAACAGCTGACTTGCAGTCACTATTTACTTGGAACACAAAGCAGGTATTTGCTTTTGTAGCAGCAGAGTATGAAACCTCCAAGAACGCCCTGAATCAGGTTTCACTATGGGATGCCATAATACCAGAGAAAGAGCATGCCAAATTCTGGATACAAATCTCAAACAAGTACCGTTTCATAGATCAGGGACATAACCTCCGAGGGAAGGACTTTAACTTGACATTGCACTGGCATGTCATGCCCAAGACAGGCAAGATGTTTGCTGACAAAATAGTTATGTCTGGTTATCGTTTACCTAATGCATACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0030312 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC22

Protein Analysis

167

Amino Acids

19.22

Weight (kDa)

9.04

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC22	PF04573	1 - 164	1.1e-55	Signal peptidase subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05230 AT3G05230 AT5G27430
fragaria_vesca	FvH4_6g05520
malus_domestica	MD04G1208000.v1.1 MD12G1222000.v1.1
prunus_persica	Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1
pyrus_communis	pycom04g18410 pycom12g20820
rosa_chinensis	RchiOBHm_Chr3g0454281
rosa_laevigata	RLG00000025466
rosa_multiflora	Rmu_sc0005231.1_g000002
rosa_roxburghii	Rroxscaffold_165G00437100 Rroxscaffold_6G00425240
rosa_rugosa	Rorug02G0654000
rosa_samantha	Rh3BG059500 Rh3CG058700 Rh3DG060000
rosa_wichuraiana	Rw3G004430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	226
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccII	CGCG	1 cut(s)	71
AclWI	GGATC	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	79
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	4 cut(s)	289, 339, 397, 440
AgsI	TTSAA	1 cut(s)	133
AhdI	GACNNNNNGTC	1 cut(s)	208
AluBI	AGCT	3 cut(s)	59, 180, 200
AluI	AGCT	3 cut(s)	59, 180, 200
AlwI	GGATC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	29
BciVI	GTATCC	1 cut(s)	336
BfaI	CTAG	1 cut(s)	56
BfuAI	ACCTGC	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	336
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmsI	GCATC	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	391
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 339, 397, 440
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	1 cut(s)	310
BseJI	GATNNNNATC	1 cut(s)	347
BseLI	CCNNNNNNNGG	4 cut(s)	289, 339, 397, 440
BseMI	GCAATG	1 cut(s)	413
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	4 cut(s)	289, 339, 397, 440
BsmFI	GGGAC	1 cut(s)	393
BsmI	GAATGC	2 cut(s)	4, 31
Bsp143I	GATC	2 cut(s)	120, 373
BspCNI	CTCAG	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	71
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	2 cut(s)	120, 373
Bst4CI	ACNGT	1 cut(s)	365
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	117
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	2 cut(s)	123, 376
BstMBI	GATC	2 cut(s)	120, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 430
BstNSI	RCATGY	2 cut(s)	332, 428
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
BsuI	GTATCC	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	2 cut(s)	185, 418
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	330
CfoI	GCGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	4 cut(s)	161, 329, 425, 430
CviJI	RGCY	3 cut(s)	59, 180, 200
CviKI_1	RGCY	3 cut(s)	59, 180, 200
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	122, 375
DpnII	GATC	2 cut(s)	120, 373
DriI	GACNNNNNGTC	1 cut(s)	208
Eam1105I	GACNNNNNGTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	79
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoT22I	ATGCAT	2 cut(s)	6, 496
FaeI	CATG	4 cut(s)	164, 332, 428, 433
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	4 cut(s)	160, 328, 424, 429
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	1 cut(s)	255
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	4 cut(s)	164, 332, 428, 433
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HinfI	GANTC	2 cut(s)	52, 286
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	4 cut(s)	88, 120, 150, 392
Hpy188III	TCNNGA	3 cut(s)	49, 124, 340
Hpy8I	GTNNAC	1 cut(s)	485
HpyAV	CCTTC	2 cut(s)	91, 391
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4V	TGCA	4 cut(s)	4, 208, 418, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 430
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	4 cut(s)	164, 332, 428, 433
HspAI	GCGC	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	120, 373
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	4 cut(s)	14, 46, 98, 210
MalI	GATC	2 cut(s)	122, 375
MboI	GATC	2 cut(s)	120, 373
MfeI	CAATTG	1 cut(s)	139
MflI	RGATCY	1 cut(s)	120
MluCI	AATT	2 cut(s)	139, 335
MnlI	CCTC	6 cut(s)	121, 166, 168, 280, 386, 398
Mph1103I	ATGCAT	2 cut(s)	6, 496
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	3 cut(s)	165, 423, 499
MspA1I	CMGCKG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	139
Mva1269I	GAATGC	2 cut(s)	4, 31
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	251, 430
NdeII	GATC	2 cut(s)	120, 373
NlaIII	CATG	4 cut(s)	164, 332, 428, 433
NmuCI	GTSAC	2 cut(s)	46, 210
NsiI	ATGCAT	2 cut(s)	6, 496
NspI	RCATGY	2 cut(s)	332, 428
PaeI	GCATGC	1 cut(s)	332
PctI	GAATGC	2 cut(s)	4, 31
PfeI	GAWTC	2 cut(s)	52, 286
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	120
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	3 cut(s)	165, 423, 499
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	120, 373
SfaNI	GCATC	1 cut(s)	295
SmiMI	CAYNNNNRTG	3 cut(s)	165, 423, 499
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	2 cut(s)	139, 335
SspMI	CTAG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	365
TasI	AATT	2 cut(s)	139, 335
TfiI	GAWTC	2 cut(s)	52, 286
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	2 cut(s)	192, 425
TseFI	GTSAC	2 cut(s)	46, 210
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	2 cut(s)	46, 210
TspDTI	ATGAA	3 cut(s)	52, 279, 358
TspRI	CASTG	2 cut(s)	192, 425
Van91I	CCANNNNNTGG	1 cut(s)	339
XagI	CCTNNNNNAGG	1 cut(s)	287
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	2 cut(s)	332, 428
XspI	CTAG	1 cut(s)	56
Zsp2I	ATGCAT	2 cut(s)	6, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.