Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010058

Physical Location & Seq

Genomic Coordinates Reverse (-)

46217199 .. 46220167

Gene Structure 2969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCATTCTTTTGGGTACAGAGCCAATGCTTTGCTCACCTTCGCAGTCACAATTCTGGCCCTCATGTGCGCCATGGCCTCCATGTCTGACAATTTCAACACCCCATCTCCCACTTCTCAAGTCCAGGTGCTGAATATCAATTGGTTTCAGAAGCAACCAAATGGGAACGACGAGATCTCTCTTTGGGATGGTATCATACCTTCCCAAGAGCATGCCAAGTTTTGGATTCATACTTCAAACAAATACCGTTTTGTTGATCAGGGAAGCAATCTCCGAGGTAAAGAATTCAACTTGACATTGCACTGGCATGTCATGCCCAAGACAGGAAAATGTTTGCTGACAAGATGGTCATGTCTGGATATCGCTTGCCACAAGAATATAGATGAGGGTGTCCTGTGTATCTTGTTGTTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0030312 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC22

Protein Analysis

138

Amino Acids

15.78

Weight (kDa)

7.7

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC22	PF04573	1 - 57	8.1e-08	Signal peptidase subunit
SPC22	PF04573	40 - 112	3.9e-18	Signal peptidase subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05230 AT3G05230 AT5G27430
fragaria_vesca	FvH4_6g05520
malus_domestica	MD04G1208000.v1.1 MD12G1222000.v1.1
prunus_persica	Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1
pyrus_communis	pycom04g18410 pycom12g20820
rosa_chinensis	RchiOBHm_Chr3g0454281
rosa_laevigata	RLG00000025466
rosa_multiflora	Rmu_sc0005231.1_g000002
rosa_roxburghii	Rroxscaffold_165G00437100 Rroxscaffold_6G00425240
rosa_rugosa	Rorug02G0654000
rosa_samantha	Rh3BG059500 Rh3CG058700 Rh3DG060000
rosa_wichuraiana	Rw3G004430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	346
AccB7I	CCANNNNNTGG	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	222, 323
AgsI	TTSAA	3 cut(s)	97, 237, 289
AjnI	CCWGG	1 cut(s)	123
AlwNI	CAGNNNCTG	1 cut(s)	130
AoxI	GGCC	2 cut(s)	57, 75
ApoI	RAATTY	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	28
BarI	GAAGNNNNNNTAC	2 cut(s)	184, 216
BccI	CCATC	3 cut(s)	112, 182, 339
BciT130I	CCWGG	1 cut(s)	125
BclI	TGATCA	1 cut(s)	256
BglII	AGATCT	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	72, 274
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 323
Bse1I	ACTGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	72, 274
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	2 cut(s)	222, 323
BseMI	GCAATG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	308
BshFI	GGCC	2 cut(s)	59, 77
BslI	CCNNNNNNNGG	2 cut(s)	222, 323
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	2 cut(s)	59, 77
Bsp143I	GATC	2 cut(s)	174, 256
Bsp19I	CCATGG	1 cut(s)	72
BspANI	GGCC	2 cut(s)	59, 77
BsrDI	GCAATG	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	72, 274
BssMI	GATC	2 cut(s)	174, 256
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	248
BstAPI	GCANNNNNTGC	1 cut(s)	313
BstC8I	GCNNGC	2 cut(s)	213, 367
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	2 cut(s)	177, 259
BstMBI	GATC	2 cut(s)	174, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	125
BstNSI	RCATGY	2 cut(s)	215, 311
BstSCI	CCNGG	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	2 cut(s)	59, 77
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	213, 367
CaiI	CAGNNNCTG	1 cut(s)	130
CfoI	GCGC	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	7 cut(s)	64, 73, 82, 212, 308, 313, 351
CviJI	RGCY	3 cut(s)	23, 59, 77
CviKI_1	RGCY	3 cut(s)	23, 59, 77
CviQI	GTAC	1 cut(s)	16
DpnI	GATC	2 cut(s)	176, 258
DpnII	GATC	2 cut(s)	174, 256
DrdI	GACNNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	361
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	7 cut(s)	67, 76, 85, 215, 311, 316, 354
FatI	CATG	7 cut(s)	63, 72, 81, 211, 307, 312, 350
FbaI	TGATCA	1 cut(s)	256
FokI	GGATG	1 cut(s)	200
GlaI	GCGC	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	59, 77
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	7 cut(s)	67, 76, 85, 215, 311, 316, 354
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HinfI	GANTC	1 cut(s)	226
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	3 cut(s)	88, 150, 275
Hpy188III	TCNNGA	1 cut(s)	356
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	2 cut(s)	49, 210
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4V	TGCA	2 cut(s)	4, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
Hsp92II	CATG	7 cut(s)	67, 76, 85, 215, 311, 316, 354
HspAI	GCGC	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	174, 256
LpnPI	CCDG	8 cut(s)	41, 110, 137, 245, 289, 309, 341, 407
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	2 cut(s)	176, 258
MboI	GATC	2 cut(s)	174, 256
MfeI	CAATTG	1 cut(s)	139
MflI	RGATCY	1 cut(s)	174
MluCI	AATT	4 cut(s)	51, 91, 139, 284
MnlI	CCTC	4 cut(s)	71, 88, 269, 379
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	125
MunI	CAATTG	1 cut(s)	139
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	313
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	2 cut(s)	174, 256
NlaIII	CATG	7 cut(s)	67, 76, 85, 215, 311, 316, 354
NmuCI	GTSAC	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	215, 311
PaeI	GCATGC	1 cut(s)	215
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	1 cut(s)	226
PflMI	CCANNNNNTGG	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	174, 256
Sau96I	GGNCC	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	4 cut(s)	41, 129, 202, 280
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	4 cut(s)	51, 91, 139, 284
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	248
TasI	AATT	4 cut(s)	51, 91, 139, 284
TfiI	GAWTC	1 cut(s)	226
TscAI	CASTG	1 cut(s)	308
TseFI	GTSAC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	308
Van91I	CCANNNNNTGG	1 cut(s)	222
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	2 cut(s)	215, 311
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.