Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010058

Physical Location & Seq

Genomic Coordinates Reverse (-)

29890472 .. 29893427

Gene Structure 2956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1222000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCATTCGTTCGGGTACAGAGCCAATGCTCTGCTGACCTTCGCAGTTACAATTTTGGCACTGATGTGCGCCATGGCCTCCATCTCCGATAATCTCAACCACCCCACTCCCACTACGCAAGTCCAGGTGCTGAATATTAATTGGTTGCAGAAGCAACTGAACGGGAACGACGAGGTCAGCATGACTATGAATATATCAGCAGACTTGCAGTCATTGTTTACATGGAATACAAAGCAGGTTTTTGTTTTTCTAGCCGCTGAGTATGGAACCCCAAAGAACTCACTGAATCAGATCTCTCTTTGGGATGGTATCTTACCAACCAAAGAACATGCCAAGTTTTGGATTCATACTTCAAACAAGTACCGCTTCATTGATCAGGGAACCAATCTCCGGGGTAAAGAATTCAACTTGACATTGCACTGGCACGTCATGCCCAAGACGGGCAAAATGTTCGCTGACAAGGTCGTAATGCCGGGATATCGCTTGCCACAAGAGTACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0030312 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC22

Protein Analysis

168

Amino Acids

19.17

Weight (kDa)

9.27

Isoelectric Point (pI)

31.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC22	PF04573	1 - 165	8.5e-54	Signal peptidase subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05230 AT3G05230 AT5G27430
fragaria_vesca	FvH4_6g05520
malus_domestica	MD04G1208000.v1.1 MD12G1222000.v1.1
prunus_persica	Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1
pyrus_communis	pycom04g18410 pycom12g20820
rosa_chinensis	RchiOBHm_Chr3g0454281
rosa_laevigata	RLG00000025466
rosa_multiflora	Rmu_sc0005231.1_g000002
rosa_roxburghii	Rroxscaffold_165G00437100 Rroxscaffold_6G00425240
rosa_rugosa	Rorug02G0654000
rosa_samantha	Rh3BG059500 Rh3CG058700 Rh3DG060000
rosa_wichuraiana	Rw3G004430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	226
AccB7I	CCANNNNNTGG	1 cut(s)	339
AciI	CCGC	2 cut(s)	255, 364
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	3 cut(s)	17, 362, 497
AfiI	CCNNNNNNNGG	3 cut(s)	339, 390, 440
AgsI	TTSAA	2 cut(s)	354, 406
AhdI	GACNNNNNGTC	1 cut(s)	208
AjiI	CACGTC	1 cut(s)	427
AjnI	CCWGG	1 cut(s)	123
AleI	CACNNNNGTG	1 cut(s)	64
AlwNI	CAGNNNCTG	1 cut(s)	130
AoxI	GGCC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	401
AseI	ATTAAT	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	71
AsuC2I	CCSGG	2 cut(s)	392, 474
BccI	CCATC	2 cut(s)	89, 299
BcgI	CGANNNNNNTGC	2 cut(s)	433, 467
BciT130I	CCWGG	1 cut(s)	125
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	2 cut(s)	392, 474
BfaI	CTAG	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	226
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	3 cut(s)	125, 392, 474
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmgBI	CACGTC	1 cut(s)	427
BmiI	GGNNCC	2 cut(s)	268, 382
BmrFI	CCNGG	3 cut(s)	125, 392, 474
BpuMI	CCSGG	2 cut(s)	392, 474
BsaJI	CCNNGG	2 cut(s)	72, 391
Bsc4I	CCNNNNNNNGG	3 cut(s)	339, 390, 440
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	72, 391
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	3 cut(s)	339, 390, 440
BseMI	GCAATG	1 cut(s)	413
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	425
BshFI	GGCC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	391, 473
BslI	CCNNNNNNNGG	3 cut(s)	339, 390, 440
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	291, 373
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	2 cut(s)	255, 364
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	268, 382
BspMI	ACCTGC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	2 cut(s)	72, 391
BssMI	GATC	2 cut(s)	291, 373
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	2 cut(s)	294, 376
BstMBI	GATC	2 cut(s)	291, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstNI	CCWGG	1 cut(s)	125
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	3 cut(s)	123, 390, 472
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	72
BtrI	CACGTC	1 cut(s)	427
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	3 cut(s)	59, 281, 418
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	485
CaiI	CAGNNNCTG	1 cut(s)	130
CfoI	GCGC	1 cut(s)	71
Csp6I	GTAC	3 cut(s)	16, 361, 496
CviAII	CATG	5 cut(s)	73, 181, 222, 329, 430
CviJI	RGCY	3 cut(s)	23, 77, 254
CviKI_1	RGCY	3 cut(s)	23, 77, 254
CviQI	GTAC	3 cut(s)	16, 361, 496
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	2 cut(s)	293, 375
DpnII	GATC	2 cut(s)	291, 373
DriI	GACNNNNNGTC	1 cut(s)	208
Eam1105I	GACNNNNNGTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	479
EcoT14I	CCWWGG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	5 cut(s)	76, 184, 225, 332, 433
FaiI	YATR	9 cut(s)	74, 182, 188, 194, 223, 264, 330, 348, 431
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FatI	CATG	5 cut(s)	72, 180, 221, 328, 429
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	2 cut(s)	391, 473
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	5 cut(s)	76, 184, 225, 332, 433
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HinfI	GANTC	2 cut(s)	286, 343
HpaII	CCGG	2 cut(s)	391, 473
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	2 cut(s)	88, 291
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	4 cut(s)	4, 148, 208, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	5 cut(s)	76, 184, 225, 332, 433
HspAI	GCGC	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	291, 373
LpnPI	CCDG	7 cut(s)	110, 137, 221, 362, 404, 406, 486
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	2 cut(s)	293, 375
MboI	GATC	2 cut(s)	291, 373
MflI	RGATCY	1 cut(s)	291
MluCI	AATT	3 cut(s)	51, 139, 401
MnlI	CCTC	2 cut(s)	88, 166
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	2 cut(s)	64, 185
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	2 cut(s)	391, 473
MspR9I	CCNGG	3 cut(s)	125, 392, 474
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	430
NciI	CCSGG	2 cut(s)	392, 474
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	2 cut(s)	291, 373
NlaIII	CATG	5 cut(s)	76, 184, 225, 332, 433
NlaIV	GGNNCC	2 cut(s)	268, 382
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	332
OliI	CACNNNNGTG	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	2 cut(s)	286, 343
PflFI	GACNNNGTC	2 cut(s)	173, 461
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	256
PshBI	ATTAAT	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	268, 382
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	291
PsyI	GACNNNGTC	2 cut(s)	173, 461
RsaI	GTAC	3 cut(s)	17, 362, 497
RsaNI	GTAC	3 cut(s)	16, 361, 496
RseI	CAYNNNNRTG	2 cut(s)	64, 185
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	291, 373
ScrFI	CCNGG	3 cut(s)	125, 392, 474
SetI	ASST	6 cut(s)	41, 129, 177, 240, 429, 465
SmiMI	CAYNNNNRTG	2 cut(s)	64, 185
Sse9I	AATT	3 cut(s)	51, 139, 401
SsiI	CCGC	2 cut(s)	255, 364
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	3 cut(s)	123, 390, 472
StyI	CCWWGG	1 cut(s)	72
TaiI	ACGT	1 cut(s)	429
TasI	AATT	3 cut(s)	51, 139, 401
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	286, 343
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	3 cut(s)	66, 288, 425
TspDTI	ATGAA	3 cut(s)	203, 335, 358
TspRI	CASTG	3 cut(s)	66, 288, 425
Tth111I	GACNNNGTC	2 cut(s)	173, 461
Van91I	CCANNNNNTGG	1 cut(s)	339
VspI	ATTAAT	1 cut(s)	138
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	1 cut(s)	332
XspI	CTAG	1 cut(s)	251
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.