Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005231.1

Orthogroup ID

OG0010058

Physical Location & Seq

Genomic Coordinates Reverse (-)

3697 .. 6328

Gene Structure 2632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005231.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgcattcttttgggtacagagccaatgctttgctcaccttcgcggtcacaattctcgccctcatgtgcgccatggcctccatgtctgacaatttcaacaccccatctcccacttctcaagtccaggtgctgaatatcaattggtttcagaagcaaccaaatgggaacgacgaggtcagcatgacactgaatatatcagcagacttgcagtcattgtttacatggaacacaaagcaggttgctgctgagtatgaaaccccgaagaacgcattgaatcagatctctctttgggatggtatcataccttcccaagagcatgccaagttttggattcatacttcaaacaaataccgttttgttgatcagggaagcaatctccgaggtaaagaattcaacttgacattgcactggcatgtcatgcccaagacgggaaaaatgtttgctgacaagatggtcatgtctggatatcgcttgccacaagaatatagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0030312 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC22

Protein Analysis

163

Amino Acids

18.68

Weight (kDa)

8.71

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05230 AT3G05230 AT5G27430
fragaria_vesca	FvH4_6g05520
malus_domestica	MD04G1208000.v1.1 MD12G1222000.v1.1
prunus_persica	Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1
pyrus_communis	pycom04g18410 pycom12g20820
rosa_chinensis	RchiOBHm_Chr3g0454281
rosa_laevigata	RLG00000025466
rosa_multiflora	Rmu_sc0005231.1_g000002
rosa_roxburghii	Rroxscaffold_165G00437100 Rroxscaffold_6G00425240
rosa_rugosa	Rorug02G0654000
rosa_samantha	Rh3BG059500 Rh3CG058700 Rh3DG060000
rosa_wichuraiana	Rw3G004430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	452
Acc36I	ACCTGC	1 cut(s)	226
AccB7I	CCANNNNNTGG	1 cut(s)	327
AccII	CGCG	1 cut(s)	44
AciI	CCGC	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	389
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	327, 428
AgsI	TTSAA	4 cut(s)	97, 274, 342, 394
AhdI	GACNNNNNGTC	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	123
AlwNI	CAGNNNCTG	1 cut(s)	130
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	28
BarI	GAAGNNNNNNTAC	2 cut(s)	289, 321
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	3 cut(s)	112, 287, 445
BciT130I	CCWGG	1 cut(s)	125
BclI	TGATCA	1 cut(s)	361
BfuAI	ACCTGC	1 cut(s)	226
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	125
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	72, 379
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	2 cut(s)	327, 428
Bse1I	ACTGG	1 cut(s)	413
Bse3DI	GCAATG	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	72, 379
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	2 cut(s)	327, 428
BseMI	GCAATG	1 cut(s)	401
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	327, 428
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	279, 361
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	44
BspMI	ACCTGC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	413
BssECI	CCNNGG	2 cut(s)	72, 379
BssMI	GATC	2 cut(s)	279, 361
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	418
BstC8I	GCNNGC	2 cut(s)	318, 473
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	298
BstFNI	CGCG	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	2 cut(s)	282, 364
BstMBI	GATC	2 cut(s)	279, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	418
BstNI	CCWGG	1 cut(s)	125
BstNSI	RCATGY	2 cut(s)	320, 416
BstSCI	CCNGG	1 cut(s)	123
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	185, 406
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	318, 473
CaiI	CAGNNNCTG	1 cut(s)	130
CfoI	GCGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	9 cut(s)	64, 73, 82, 181, 222, 317, 413, 418, 457
CviJI	RGCY	2 cut(s)	23, 77
CviKI_1	RGCY	2 cut(s)	23, 77
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	2 cut(s)	281, 363
DpnII	GATC	2 cut(s)	279, 361
DrdI	GACNNNNNNGTC	1 cut(s)	452
DriI	GACNNNNNGTC	1 cut(s)	208
DseDI	GACNNNNNNGTC	1 cut(s)	452
Eam1105I	GACNNNNNGTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	467
EcoRI	GAATTC	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	9 cut(s)	67, 76, 85, 184, 225, 320, 416, 421, 460
FatI	CATG	9 cut(s)	63, 72, 81, 180, 221, 316, 412, 417, 456
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	243
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	9 cut(s)	67, 76, 85, 184, 225, 320, 416, 421, 460
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HinfI	GANTC	2 cut(s)	274, 331
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	4 cut(s)	88, 150, 279, 380
Hpy188III	TCNNGA	1 cut(s)	462
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	2 cut(s)	49, 315
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	3 cut(s)	4, 208, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	418
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	9 cut(s)	67, 76, 85, 184, 225, 320, 416, 421, 460
HspAI	GCGC	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	279, 361
LpnPI	CCDG	6 cut(s)	110, 137, 221, 350, 394, 447
Lsp1109I	GCAGC	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	2 cut(s)	281, 363
MboI	GATC	2 cut(s)	279, 361
MboII	GAAGA	1 cut(s)	274
MfeI	CAATTG	1 cut(s)	139
MflI	RGATCY	1 cut(s)	279
MluCI	AATT	4 cut(s)	51, 91, 139, 389
MnlI	CCTC	4 cut(s)	71, 88, 166, 374
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	411
MspR9I	CCNGG	1 cut(s)	125
MunI	CAATTG	1 cut(s)	139
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	418
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	2 cut(s)	279, 361
NlaIII	CATG	9 cut(s)	67, 76, 85, 184, 225, 320, 416, 421, 460
NmuCI	GTSAC	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	320, 416
PaeI	GCATGC	1 cut(s)	320
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	2 cut(s)	274, 331
PflFI	GACNNNGTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	327
PkrI	GCNGC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	279
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	411
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	279, 361
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	6 cut(s)	41, 129, 177, 240, 307, 385
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
SphI	GCATGC	1 cut(s)	320
Sse9I	AATT	4 cut(s)	51, 91, 139, 389
SsiI	CCGC	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	353
TasI	AATT	4 cut(s)	51, 91, 139, 389
TfiI	GAWTC	2 cut(s)	274, 331
TscAI	CASTG	2 cut(s)	192, 413
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	267, 323
TspRI	CASTG	2 cut(s)	192, 413
Tth111I	GACNNNGTC	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	327
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	2 cut(s)	320, 416
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.