Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010058

Physical Location & Seq

Genomic Coordinates Forward (+)

4061794 .. 4064916

Gene Structure 3123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG060000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCATTCTTTTGGGTACAGAGCCAATGCTTTGCTCACCTTCGCAGTCACAATTCTTGCCCTCATGTGCGCCATGGCCTCCATGTCTGACAATTTCAACACCCCATCTCCCACTTCTCAAGTCCAGGTGCTGAATATCAATTGGTTTCAGAAGCAACCAAATGGGAACGACGAGGTCAGCATGACACTGAATATATCAGCAGACTTGCAGTCATTGTTTACATGGAACACAAAGCAGGTTTTTGTTTTTCTAGCTGCTGAGTATGAAACCCCGAAGAACGCATTGAATCAGATCTCTCTTTGGGATGGTATCATACCTTCCCAAGAGCATGCCAAGTTTTGGATTCATACTTCAAACAAATACCGTTTTGTTGATCAGGGAAGCAATCTCCGAGGTAAAGAATTCAACTTGACATTGCACTGGCATGTCATGCCCAAGACGGGAAAAATGTTTGCTGACAAGATGGTCATGTCTGGATATCGCTTGCCACAAGAATATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0030312 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC22

Protein Analysis

167

Amino Acids

19.19

Weight (kDa)

8.71

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC22	PF04573	1 - 165	5.2e-56	Signal peptidase subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05230 AT3G05230 AT5G27430
fragaria_vesca	FvH4_6g05520
malus_domestica	MD04G1208000.v1.1 MD12G1222000.v1.1
prunus_persica	Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1
pyrus_communis	pycom04g18410 pycom12g20820
rosa_chinensis	RchiOBHm_Chr3g0454281
rosa_laevigata	RLG00000025466
rosa_multiflora	Rmu_sc0005231.1_g000002
rosa_roxburghii	Rroxscaffold_165G00437100 Rroxscaffold_6G00425240
rosa_rugosa	Rorug02G0654000
rosa_samantha	Rh3BG059500 Rh3CG058700 Rh3DG060000
rosa_wichuraiana	Rw3G004430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
Acc36I	ACCTGC	1 cut(s)	226
AccB7I	CCANNNNNTGG	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	339, 440
AgsI	TTSAA	4 cut(s)	97, 286, 354, 406
AhdI	GACNNNNNGTC	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
AlwNI	CAGNNNCTG	1 cut(s)	130
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	28
BarI	GAAGNNNNNNTAC	2 cut(s)	301, 333
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	3 cut(s)	112, 299, 457
BciT130I	CCWGG	1 cut(s)	125
BclI	TGATCA	1 cut(s)	373
BfaI	CTAG	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	226
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	125
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	72, 391
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	2 cut(s)	339, 440
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	72, 391
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	339, 440
BseMI	GCAATG	1 cut(s)	413
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	241
BshFI	GGCC	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	339, 440
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	291, 373
Bsp19I	CCATGG	1 cut(s)	72
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	2 cut(s)	72, 391
BssMI	GATC	2 cut(s)	291, 373
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	365
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstC8I	GCNNGC	2 cut(s)	330, 485
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	2 cut(s)	294, 376
BstMBI	GATC	2 cut(s)	291, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstNI	CCWGG	1 cut(s)	125
BstNSI	RCATGY	2 cut(s)	332, 428
BstSCI	CCNGG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	2 cut(s)	185, 418
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	330, 485
CaiI	CAGNNNCTG	1 cut(s)	130
CfoI	GCGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	9 cut(s)	64, 73, 82, 181, 222, 329, 425, 430, 469
CviJI	RGCY	3 cut(s)	23, 77, 254
CviKI_1	RGCY	3 cut(s)	23, 77, 254
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	2 cut(s)	293, 375
DpnII	GATC	2 cut(s)	291, 373
DrdI	GACNNNNNNGTC	1 cut(s)	464
DriI	GACNNNNNGTC	1 cut(s)	208
DseDI	GACNNNNNNGTC	1 cut(s)	464
Eam1105I	GACNNNNNGTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	479
EcoT14I	CCWWGG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	9 cut(s)	67, 76, 85, 184, 225, 332, 428, 433, 472
FatI	CATG	9 cut(s)	63, 72, 81, 180, 221, 328, 424, 429, 468
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	9 cut(s)	67, 76, 85, 184, 225, 332, 428, 433, 472
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HinfI	GANTC	2 cut(s)	286, 343
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	4 cut(s)	88, 150, 291, 392
Hpy188III	TCNNGA	1 cut(s)	474
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	2 cut(s)	49, 327
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4V	TGCA	3 cut(s)	4, 208, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
HpyF3I	CTNAG	1 cut(s)	258
Hsp92II	CATG	9 cut(s)	67, 76, 85, 184, 225, 332, 428, 433, 472
HspAI	GCGC	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	291, 373
LpnPI	CCDG	6 cut(s)	110, 137, 221, 362, 406, 459
Lsp1109I	GCAGC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	2 cut(s)	293, 375
MboI	GATC	2 cut(s)	291, 373
MboII	GAAGA	1 cut(s)	286
MfeI	CAATTG	1 cut(s)	139
MflI	RGATCY	1 cut(s)	291
MluCI	AATT	4 cut(s)	51, 91, 139, 401
MnlI	CCTC	4 cut(s)	71, 88, 166, 386
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	125
MunI	CAATTG	1 cut(s)	139
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	430
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	2 cut(s)	291, 373
NlaIII	CATG	9 cut(s)	67, 76, 85, 184, 225, 332, 428, 433, 472
NmuCI	GTSAC	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	332, 428
PaeI	GCATGC	1 cut(s)	332
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	2 cut(s)	286, 343
PflFI	GACNNNGTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	291
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	423
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	291, 373
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	7 cut(s)	41, 129, 177, 240, 256, 319, 397
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	4 cut(s)	51, 91, 139, 401
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	365
TasI	AATT	4 cut(s)	51, 91, 139, 401
TfiI	GAWTC	2 cut(s)	286, 343
TscAI	CASTG	2 cut(s)	192, 425
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	279, 335
TspRI	CASTG	2 cut(s)	192, 425
Tth111I	GACNNNGTC	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	339
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	2 cut(s)	332, 428
XspI	CTAG	1 cut(s)	251
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.