Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000165

Orthogroup ID

OG0010058

Physical Location & Seq

Genomic Coordinates Forward (+)

215143 .. 218107

Gene Structure 2965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_165G00437100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCATTCTTTTGGGTACAGAGCCAATGCTTTGCTCACCTTCGCAGTCACAATTCTGGCCCTCATGTGCGCCATGGCCTCCATGTCTGACAATTTCAACACCCCATCTCCCACTTCTCAAGTCCAGGTGCTGAATATCAATTGGTTTCAGAAGCAACCAAATGGGAACGACGAGGTTTTTGTTTTTCTAGCTGCTGAGTATGAAACCCCGAAGAACGCATTGAATCAGATCTCTCTTTGGGATGGTATCATACCTTCCCAAGAGCATGCCAAGTTTTGGATTCATACTTCAAACAAATACCGTTTTGTTGATCAGGGAAGCAATCTCCGAGGTAAAGAATTCAACTTGACATTGCACTGGCATGTCATGCCCAAGACAGGAAAAATGTTTGCTGACAAGATGGTCATGTCTGGATATCGCTTGCCACAAGAATATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0030312 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC22

Protein Analysis

146

Amino Acids

16.81

Weight (kDa)

8.74

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC22	PF04573	1 - 59	3.8e-08	Signal peptidase subunit
SPC22	PF04573	58 - 144	1.6e-28	Signal peptidase subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05230 AT3G05230 AT5G27430
fragaria_vesca	FvH4_6g05520
malus_domestica	MD04G1208000.v1.1 MD12G1222000.v1.1
prunus_persica	Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1 Prupe.6G328900_v2.0.a1
pyrus_communis	pycom04g18410 pycom12g20820
rosa_chinensis	RchiOBHm_Chr3g0454281
rosa_laevigata	RLG00000025466
rosa_multiflora	Rmu_sc0005231.1_g000002
rosa_roxburghii	Rroxscaffold_165G00437100 Rroxscaffold_6G00425240
rosa_rugosa	Rorug02G0654000
rosa_samantha	Rh3BG059500 Rh3CG058700 Rh3DG060000
rosa_wichuraiana	Rw3G004430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	401
AccB7I	CCANNNNNTGG	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	338
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	276, 377
AgsI	TTSAA	4 cut(s)	97, 223, 291, 343
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	130
AoxI	GGCC	2 cut(s)	57, 75
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	338
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	28
BarI	GAAGNNNNNNTAC	2 cut(s)	238, 270
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	3 cut(s)	112, 236, 394
BciT130I	CCWGG	1 cut(s)	125
BclI	TGATCA	1 cut(s)	310
BfaI	CTAG	1 cut(s)	188
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	72, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 377
Bse1I	ACTGG	1 cut(s)	362
Bse3DI	GCAATG	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	72, 328
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	2 cut(s)	276, 377
BseMI	GCAATG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	2 cut(s)	59, 77
BslI	CCNNNNNNNGG	2 cut(s)	276, 377
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	2 cut(s)	59, 77
Bsp143I	GATC	2 cut(s)	228, 310
Bsp19I	CCATGG	1 cut(s)	72
BspANI	GGCC	2 cut(s)	59, 77
BspCNI	CTCAG	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	2 cut(s)	72, 328
BssMI	GATC	2 cut(s)	228, 310
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	267, 422
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	2 cut(s)	231, 313
BstMBI	GATC	2 cut(s)	228, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNI	CCWGG	1 cut(s)	125
BstNSI	RCATGY	2 cut(s)	269, 365
BstSCI	CCNGG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	59, 77
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	355
Cac8I	GCNNGC	2 cut(s)	267, 422
CaiI	CAGNNNCTG	1 cut(s)	130
CfoI	GCGC	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	7 cut(s)	64, 73, 82, 266, 362, 367, 406
CviJI	RGCY	4 cut(s)	23, 59, 77, 191
CviKI_1	RGCY	4 cut(s)	23, 59, 77, 191
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	230, 312
DpnII	GATC	2 cut(s)	228, 310
DrdI	GACNNNNNNGTC	1 cut(s)	401
DseDI	GACNNNNNNGTC	1 cut(s)	401
Eco130I	CCWWGG	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	7 cut(s)	67, 76, 85, 269, 365, 370, 409
FatI	CATG	7 cut(s)	63, 72, 81, 265, 361, 366, 405
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	59, 77
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	7 cut(s)	67, 76, 85, 269, 365, 370, 409
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HinfI	GANTC	2 cut(s)	223, 280
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	4 cut(s)	88, 150, 228, 329
Hpy188III	TCNNGA	1 cut(s)	411
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	2 cut(s)	49, 264
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4V	TGCA	2 cut(s)	4, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	7 cut(s)	67, 76, 85, 269, 365, 370, 409
HspAI	GCGC	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	2 cut(s)	228, 310
LpnPI	CCDG	7 cut(s)	41, 110, 137, 299, 343, 363, 396
Lsp1109I	GCAGC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	2 cut(s)	230, 312
MboI	GATC	2 cut(s)	228, 310
MboII	GAAGA	1 cut(s)	223
MfeI	CAATTG	1 cut(s)	139
MflI	RGATCY	1 cut(s)	228
MluCI	AATT	4 cut(s)	51, 91, 139, 338
MnlI	CCTC	4 cut(s)	71, 88, 166, 323
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	125
MunI	CAATTG	1 cut(s)	139
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	2 cut(s)	228, 310
NlaIII	CATG	7 cut(s)	67, 76, 85, 269, 365, 370, 409
NmuCI	GTSAC	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	269, 365
PaeI	GCATGC	1 cut(s)	269
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	2 cut(s)	223, 280
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	360
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	228, 310
Sau96I	GGNCC	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	6 cut(s)	41, 129, 177, 193, 256, 334
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
SphI	GCATGC	1 cut(s)	269
Sse9I	AATT	4 cut(s)	51, 91, 139, 338
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	302
TasI	AATT	4 cut(s)	51, 91, 139, 338
TfiI	GAWTC	2 cut(s)	223, 280
TscAI	CASTG	1 cut(s)	362
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	216, 272
TspRI	CASTG	1 cut(s)	362
Van91I	CCANNNNNTGG	1 cut(s)	276
XapI	RAATTY	1 cut(s)	338
XceI	RCATGY	2 cut(s)	269, 365
XspI	CTAG	1 cut(s)	188
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.