AT3G05345

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015987
Physical Location & Seq
Reverse (-)
1522449 .. 1523889
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05345.1

Sequence Viewer

Length: 735 bp
ATGGAATGTCTTCGTGTATTTGCTTCGGTACCTAAAATCTCTTTCTTCTCCAATTCAAGATACTCAACTTCTCAGCGATTCATTCCCAGTTGCAGAGGAAAAAACAGAGAGGATCCTCTCTCCAGCTCTTCACCGTACTCTATACTTGGCGTAGAGCCAAGCTGCTCATCTTCCGAGCTAAAGGCAGCTTTTCGTGCCAAAGTGAAACAATACCATCCAGATGTAAACAAAGACGGAAGCAACTCTGATATTATGATCCGTCGCATAATCCAGGCATATGAGATGTTAACAAACTATAGCCGGTCAGAGATAATTGAAGGAGAATGCTTGGATCCTTTTGACCATCCAGAGTGCGAGGCACTTGACGTGTTTGTGAATGAAGTCCTATGTGTTGGAAAAAGATGTTCATACCCATGCTTTGAAACAGCTTCTCATGTCTTCTCGTGTGATTCATCTGGGACAGCTCGAGCAATGTCCCAAGGACATGGCGAAGATTACCGTGTACAGTCTGCAGTTAATCAGTGTCCGAGAAATTGTATACATTATGTCACACCATCACAGAGAATTATTCTAGAAGAGTTACTTGACAGCGTCGTGGACAAACCTTACGATTGTTCCGCAGAAGCAGAATTTCTATATGCTCTTATTGTGAAAGCTAAATTTGAGAACAATCGGTATCAGAAGCCAAAGAAGAAACAACCTGAATCTTCAGGAAAACATGTAGACTGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Fer4_15

Protein Analysis

244

Amino Acids

27.65

Weight (kDa)

6.32

Isoelectric Point (pI)

58.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 45 - 100 2.8e-13 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015987)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05345
fragaria_vesca FvH4_7g03590 FvH4_7g03590
malus_domestica MD12G1219200.v1.1
prunus_persica Prupe.6G325800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454761
rosa_laevigata RLG00000025417
rosa_multiflora Rmu_sc0001792.1_g000019
rosa_roxburghii Rroxscaffold_6G00424770
rosa_rugosa Rorug03G0002300
rosa_samantha Rh3AG062300 Rh3BG064200 Rh3CG063100 Rh3DG063900
rosa_wichuraiana Rw3G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 28
AccI GTMKAC 2 cut(s) 538, 723
AciI CCGC 1 cut(s) 618
AclWI GGATC 5 cut(s) 107, 120, 250, 326, 339
AcsI RAATTY 2 cut(s) 629, 659
AcuI CTGAAG 1 cut(s) 693
AfaI GTAC 3 cut(s) 30, 137, 504
AflIII ACRYGT 2 cut(s) 366, 718
AgsI TTSAA 3 cut(s) 57, 317, 422
AjiI CACGTC 1 cut(s) 367
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 7 cut(s) 126, 162, 178, 188, 428, 464, 656
AluI AGCT 7 cut(s) 126, 162, 178, 188, 428, 464, 656
AlwI GGATC 5 cut(s) 107, 120, 250, 326, 339
Ama87I CYCGRG 1 cut(s) 465
ApeKI GCWGC 2 cut(s) 162, 185
ApoI RAATTY 2 cut(s) 629, 659
Asp700I GAANNNNTTC 1 cut(s) 9
Asp718I GGTACC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 123
AvaI CYCGRG 1 cut(s) 465
BamHI GGATCC 2 cut(s) 112, 331
BanI GGYRCC 1 cut(s) 28
BauI CACGAG 1 cut(s) 442
BbsI GAAGAC 2 cut(s) 2, 430
BbvI GCAGC 2 cut(s) 149, 197
BccI CCATC 3 cut(s) 222, 351, 562
BciT130I CCWGG 1 cut(s) 272
BfaI CTAG 1 cut(s) 572
BfmI CTRYAG 2 cut(s) 295, 510
BisI GCNGC 2 cut(s) 163, 186
BlsI GCNGC 2 cut(s) 164, 187
Bme1390I CCNGG 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 465
BmgBI CACGTC 1 cut(s) 367
BmiI GGNNCC 3 cut(s) 30, 114, 333
BmrFI CCNGG 1 cut(s) 272
BmrI ACTGGG 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 81
BpiI GAAGAC 2 cut(s) 2, 430
BpmI CTGGAG 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 478
Bse118I RCCGGY 1 cut(s) 300
Bse1I ACTGG 2 cut(s) 87, 731
Bse3DI GCAATG 1 cut(s) 477
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 478
BseGI GGATG 2 cut(s) 214, 343
BseMI GCAATG 1 cut(s) 477
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 2 cut(s) 87, 731
BseXI GCAGC 2 cut(s) 149, 197
BshNI GGYRCC 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 465
BsiSI CCGG 1 cut(s) 301
BslFI GGGAC 2 cut(s) 460, 472
BsmFI GGGAC 2 cut(s) 460, 472
BsmI GAATGC 1 cut(s) 329
BsoBI CYCGRG 1 cut(s) 465
Bsp1407I TGTACA 1 cut(s) 502
Bsp143I GATC 3 cut(s) 112, 255, 331
BspACI CCGC 1 cut(s) 618
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 3 cut(s) 30, 114, 333
BspMAI CTGCAG 1 cut(s) 514
BspPI GGATC 5 cut(s) 107, 120, 250, 326, 339
BspQI GCTCTTC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 477
BsrFI RCCGGY 1 cut(s) 300
BsrGI TGTACA 1 cut(s) 502
BsrI ACTGG 2 cut(s) 87, 731
BssAI RCCGGY 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 478
BssMI GATC 3 cut(s) 112, 255, 331
BssNAI GTATAC 1 cut(s) 539
BssSI CACGAG 1 cut(s) 442
BssT1I CCWWGG 1 cut(s) 478
Bst1107I GTATAC 1 cut(s) 539
Bst2BI CACGAG 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 3 cut(s) 135, 500, 507
Bst6I CTCTTC 2 cut(s) 133, 570
BstAUI TGTACA 1 cut(s) 502
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 214, 343
BstKTI GATC 3 cut(s) 115, 258, 334
BstMBI GATC 3 cut(s) 112, 255, 331
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 722
BstSCI CCNGG 1 cut(s) 270
BstSFI CTRYAG 2 cut(s) 295, 510
BstV1I GCAGC 2 cut(s) 149, 197
BstV2I GAAGAC 2 cut(s) 2, 430
BstX2I RGATCY 2 cut(s) 112, 331
BstXI CCANNNNNNTGG 1 cut(s) 485
BstYI RGATCY 2 cut(s) 112, 331
BstZ17I GTATAC 1 cut(s) 539
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 214, 343
BtsIMutI CAGTG 1 cut(s) 527
Cfr10I RCCGGY 1 cut(s) 300
CseI GACGC 1 cut(s) 580
Csp6I GTAC 3 cut(s) 29, 136, 503
CviAII CATG 4 cut(s) 414, 434, 485, 719
CviQI GTAC 3 cut(s) 29, 136, 503
DdeI CTNAG 1 cut(s) 72
DpnI GATC 3 cut(s) 114, 257, 333
DpnII GATC 3 cut(s) 112, 255, 331
Eam1104I CTCTTC 2 cut(s) 133, 570
EarI CTCTTC 2 cut(s) 133, 570
Eco130I CCWWGG 1 cut(s) 478
Eco57I CTGAAG 1 cut(s) 693
Eco88I CYCGRG 1 cut(s) 465
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 478
ErhI CCWWGG 1 cut(s) 478
FaeI CATG 4 cut(s) 417, 437, 488, 722
FalI AAGNNNNNCTT 2 cut(s) 567, 599
FaqI GGGAC 2 cut(s) 460, 472
FatI CATG 4 cut(s) 413, 433, 484, 718
FauNDI CATATG 1 cut(s) 277
FblI GTMKAC 2 cut(s) 538, 723
Fnu4HI GCNGC 2 cut(s) 163, 186
FokI GGATG 2 cut(s) 201, 330
Fsp4HI GCNGC 2 cut(s) 163, 186
FspBI CTAG 1 cut(s) 572
GluI GCNGC 2 cut(s) 163, 186
GsuI CTGGAG 1 cut(s) 106
HapII CCGG 1 cut(s) 301
HgaI GACGC 1 cut(s) 580
Hin1II CATG 4 cut(s) 417, 437, 488, 722
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 3 cut(s) 78, 449, 704
HpaI GTTAAC 1 cut(s) 288
HpaII CCGG 1 cut(s) 301
HphI GGTGA 1 cut(s) 123
Hpy166II GTNNAC 6 cut(s) 226, 288, 503, 539, 598, 724
Hpy188I TCNGA 6 cut(s) 175, 247, 307, 528, 681, 734
Hpy188III TCNNGA 5 cut(s) 57, 218, 347, 572, 711
Hpy8I GTNNAC 6 cut(s) 226, 288, 503, 539, 598, 724
Hpy99I CGWCG 2 cut(s) 264, 596
HpyAV CCTTC 1 cut(s) 311
HpyCH4III ACNGT 3 cut(s) 135, 500, 507
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 2 cut(s) 93, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 4 cut(s) 417, 437, 488, 722
KpnI GGTACC 1 cut(s) 32
KspAI GTTAAC 1 cut(s) 288
Kzo9I GATC 3 cut(s) 112, 255, 331
LguI GCTCTTC 1 cut(s) 133
Lsp1109I GCAGC 2 cut(s) 149, 197
MaeI CTAG 1 cut(s) 572
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 2 cut(s) 547, 579
MalI GATC 3 cut(s) 114, 257, 333
MboI GATC 3 cut(s) 112, 255, 331
MboII GAAGA 8 cut(s) 37, 120, 162, 430, 503, 587, 699, 703
MflI RGATCY 2 cut(s) 112, 331
MluCI AATT 6 cut(s) 52, 312, 532, 564, 629, 659
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 4 cut(s) 89, 103, 126, 349
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 2 cut(s) 287, 516
MslI CAYNNNNRTG 2 cut(s) 219, 412
MspI CCGG 1 cut(s) 301
MspR9I CCNGG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 329
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeI CATATG 1 cut(s) 277
NdeII GATC 3 cut(s) 112, 255, 331
NlaIII CATG 4 cut(s) 417, 437, 488, 722
NlaIV GGNNCC 3 cut(s) 30, 114, 333
NmuCI GTSAC 1 cut(s) 547
NspI RCATGY 1 cut(s) 722
PaeR7I CTCGAG 1 cut(s) 465
PciI ACATGT 1 cut(s) 718
PciSI GCTCTTC 1 cut(s) 133
PctI GAATGC 1 cut(s) 329
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 3 cut(s) 78, 449, 704
PflFI GACNNNGTC 1 cut(s) 590
PkrI GCNGC 2 cut(s) 164, 187
PscI ACATGT 1 cut(s) 718
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 3 cut(s) 30, 114, 333
PspXI VCTCGAGB 1 cut(s) 465
PstI CTGCAG 1 cut(s) 514
PsuI RGATCY 2 cut(s) 112, 331
PsyI GACNNNGTC 1 cut(s) 590
RsaI GTAC 3 cut(s) 30, 137, 504
RsaNI GTAC 3 cut(s) 29, 136, 503
RseI CAYNNNNRTG 2 cut(s) 219, 412
SapI GCTCTTC 1 cut(s) 133
SaqAI TTAA 2 cut(s) 287, 516
SatI GCNGC 2 cut(s) 163, 186
Sau3AI GATC 3 cut(s) 112, 255, 331
ScrFI CCNGG 1 cut(s) 272
SfcI CTRYAG 2 cut(s) 295, 510
Sfr274I CTCGAG 1 cut(s) 465
SlaI CTCGAG 1 cut(s) 465
SmiMI CAYNNNNRTG 2 cut(s) 219, 412
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
Sse9I AATT 6 cut(s) 52, 312, 532, 564, 629, 659
SsiI CCGC 1 cut(s) 618
SspMI CTAG 1 cut(s) 572
StyD4I CCNGG 1 cut(s) 270
StyI CCWWGG 1 cut(s) 478
TaaI ACNGT 3 cut(s) 135, 500, 507
TaiI ACGT 1 cut(s) 369
TaqI TCGA 1 cut(s) 466
TasI AATT 6 cut(s) 52, 312, 532, 564, 629, 659
TatI WGTACW 1 cut(s) 502
TfiI GAWTC 3 cut(s) 78, 449, 704
Tru1I TTAA 2 cut(s) 287, 516
Tru9I TTAA 2 cut(s) 287, 516
TscAI CASTG 1 cut(s) 527
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 2 cut(s) 162, 185
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 4 cut(s) 70, 393, 396, 441
TspGWI ACGGA 2 cut(s) 248, 249
TspRI CASTG 1 cut(s) 527
Tth111I GACNNNGTC 1 cut(s) 590
XapI RAATTY 2 cut(s) 629, 659
XbaI TCTAGA 1 cut(s) 571
XceI RCATGY 1 cut(s) 722
XhoI CTCGAG 1 cut(s) 465
XmiI GTMKAC 2 cut(s) 538, 723
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.