Rh3AG062300

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0015987
Physical Location & Seq
Reverse (-)
4302265 .. 4303896
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG062300.1

Sequence Viewer

Length: 723 bp
ATGTGCGGTAGTGTTGTTCCATTTCGAAAAGCCGTTAAAACAGTTAACCACCGCCACAACTTCAACTTCACGGTGAAGAATAGCCGCACCGGAGAGGACGCTCCCCTCTCCGGTTCTTCCTCCGCTTACTCTATTCTTGGCGTCCACCCAACTTGCTCGGCCGCCGAGCTCAAAGCCGCTTTCCGAGCCAAAGTGAAGCAGTTTCATCCTGATGTTAATAGGAATGCAAAAGGTTCTGATACCATGATCCGCCGTGTCATTCAGGCCTATGAGATGCTATCCAATTGCAGCCGATCGGAGATCATCGAAGGGGAATGTTTAGATCCTTTTGATAATCCAGAATGTGAAGCGTTTGATGTTTTTGTTAATGAGGCTCTTTGTGCTGGAAAAGGTTGTCCATACTCATGTGTACAAAGAGCTCCTCATGCCTTCACTTATGCTTCAACCGGGACTGCAAGAGCGACTTCTCAAGGACATGGAGAAGATTACCAAGTGCAGCTTGCAGTTGGTCAGTGCCCAAGAAGTTGCATTCATTATGTTACACCTTCTCAGAGGATTGTTTTGGAGGAGCTTCTTGACAGCATCTTGAACAAACCTTATGATAGTTCAGCCGAGGCAGATCTGCTTTACTCTCTTATAGTTAAAGCCAGCTTTGAGAACAATCGATATCAAAAGCCAAAGAAGCAACCCAAAGCTTCAACACAACATGTAGATTGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Fer4_15

Protein Analysis

240

Amino Acids

26.57

Weight (kDa)

8.01

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 42 - 97 3.4e-13 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015987)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05345
fragaria_vesca FvH4_7g03590 FvH4_7g03590
malus_domestica MD12G1219200.v1.1
prunus_persica Prupe.6G325800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454761
rosa_laevigata RLG00000025417
rosa_multiflora Rmu_sc0001792.1_g000019
rosa_roxburghii Rroxscaffold_6G00424770
rosa_rugosa Rorug03G0002300
rosa_samantha Rh3AG062300 Rh3BG064200 Rh3CG063100 Rh3DG063900
rosa_wichuraiana Rw3G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 6, 52, 85, 123, 162, 177, 250
AclWI GGATC 2 cut(s) 241, 317
AcoI YGGCCR 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 706
AgsI TTSAA 4 cut(s) 64, 444, 589, 699
AluBI AGCT 6 cut(s) 169, 419, 499, 571, 651, 695
AluI AGCT 6 cut(s) 169, 419, 499, 571, 651, 695
Alw21I GWGCWC 2 cut(s) 171, 421
AlwI GGATC 2 cut(s) 241, 317
AoxI GGCC 2 cut(s) 159, 264
ApeKI GCWGC 2 cut(s) 288, 496
AsuC2I CCSGG 1 cut(s) 448
AsuHPI GGTGA 1 cut(s) 85
AsuII TTCGAA 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 518
BanII GRGCYC 2 cut(s) 171, 421
Bbv12I GWGCWC 2 cut(s) 171, 421
BbvI GCAGC 2 cut(s) 300, 508
BceAI ACGGC 2 cut(s) 17, 237
BcnI CCSGG 1 cut(s) 448
BglII AGATCT 1 cut(s) 619
BisI GCNGC 5 cut(s) 85, 162, 177, 289, 497
BlsI GCNGC 5 cut(s) 86, 163, 178, 290, 498
Bme1390I CCNGG 1 cut(s) 448
BmrFI CCNGG 1 cut(s) 448
BmsI GCATC 2 cut(s) 264, 591
Bpu14I TTCGAA 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 453
BpuMI CCSGG 1 cut(s) 448
Bsa29I ATCGAT 1 cut(s) 664
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 612
BsaWI WCCGGW 2 cut(s) 89, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 110
BseCI ATCGAT 1 cut(s) 664
BseDI CCNNGG 1 cut(s) 612
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 563
BseRI GAGGAG 2 cut(s) 411, 581
BseSI GKGCMC 1 cut(s) 518
BseX3I CGGCCG 1 cut(s) 159
BseXI GCAGC 2 cut(s) 300, 508
BsgI GTGCAG 1 cut(s) 515
Bsh1285I CGRYCG 2 cut(s) 162, 296
BshFI GGCC 2 cut(s) 161, 266
BshVI ATCGAT 1 cut(s) 664
BsiEI CGRYCG 2 cut(s) 162, 296
BsiHKAI GWGCWC 2 cut(s) 171, 421
BsiSI CCGG 3 cut(s) 90, 111, 447
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 463
BsmI GAATGC 2 cut(s) 229, 528
BsnI GGCC 2 cut(s) 161, 266
Bsp119I TTCGAA 1 cut(s) 25
Bsp1286I GDGCHC 3 cut(s) 171, 421, 518
Bsp1407I TGTACA 1 cut(s) 409
Bsp143I GATC 5 cut(s) 246, 293, 300, 322, 619
BspACI CCGC 7 cut(s) 6, 52, 85, 123, 162, 177, 250
BspANI GGCC 2 cut(s) 161, 266
BspCNI CTCAG 1 cut(s) 562
BspDI ATCGAT 1 cut(s) 664
BspPI GGATC 2 cut(s) 241, 317
BspT104I TTCGAA 1 cut(s) 25
BsrGI TGTACA 1 cut(s) 409
BssECI CCNNGG 1 cut(s) 612
BssMI GATC 5 cut(s) 246, 293, 300, 322, 619
BssNI GRCGYC 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 43, 73
BstACI GRCGYC 1 cut(s) 141
BstAUI TGTACA 1 cut(s) 409
BstBI TTCGAA 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 501, 649
BstDEI CTNAG 1 cut(s) 549
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 5 cut(s) 249, 296, 303, 325, 622
BstMBI GATC 5 cut(s) 246, 293, 300, 322, 619
BstMCI CGRYCG 2 cut(s) 162, 296
BstMWI GCNNNNNNNGC 4 cut(s) 185, 380, 425, 682
BstNSI RCATGY 1 cut(s) 710
BstSCI CCNGG 1 cut(s) 446
BstSLI GKGCMC 1 cut(s) 518
BstV1I GCAGC 2 cut(s) 300, 508
BstX2I RGATCY 2 cut(s) 322, 619
BstYI RGATCY 2 cut(s) 322, 619
BstZI CGGCCG 1 cut(s) 159
Bsu15I ATCGAT 1 cut(s) 664
BsuRI GGCC 2 cut(s) 161, 266
BsuTUI ATCGAT 1 cut(s) 664
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 518
Cac8I GCNNGC 2 cut(s) 501, 649
ClaI ATCGAT 1 cut(s) 664
CseI GACGC 2 cut(s) 107, 130
Csp6I GTAC 1 cut(s) 410
CspCI CAANNNNNGTGG 2 cut(s) 134, 169
CviAII CATG 5 cut(s) 244, 405, 425, 476, 707
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 1 cut(s) 549
DpnI GATC 5 cut(s) 248, 295, 302, 324, 621
DpnII GATC 5 cut(s) 246, 293, 300, 322, 619
EaeI YGGCCR 1 cut(s) 159
EagI CGGCCG 1 cut(s) 159
EciI GGCGGA 1 cut(s) 239
Ecl136II GAGCTC 2 cut(s) 169, 419
EclXI CGGCCG 1 cut(s) 159
Eco147I AGGCCT 1 cut(s) 266
Eco24I GRGCYC 2 cut(s) 171, 421
Eco32I GATATC 1 cut(s) 668
Eco52I CGGCCG 1 cut(s) 159
Eco53kI GAGCTC 2 cut(s) 169, 419
EcoICRI GAGCTC 2 cut(s) 169, 419
EcoRV GATATC 1 cut(s) 668
EcoT38I GRGCYC 2 cut(s) 171, 421
FaeI CATG 5 cut(s) 247, 408, 428, 479, 710
FalI AAGNNNNNCTT 4 cut(s) 448, 480, 483, 515
FaqI GGGAC 1 cut(s) 463
FatI CATG 5 cut(s) 243, 404, 424, 475, 706
Fnu4HI GCNGC 5 cut(s) 85, 162, 177, 289, 497
FokI GGATG 1 cut(s) 192
FriOI GRGCYC 2 cut(s) 171, 421
Fsp4HI GCNGC 5 cut(s) 85, 162, 177, 289, 497
GluI GCNGC 5 cut(s) 85, 162, 177, 289, 497
HaeIII GGCC 2 cut(s) 161, 266
HapII CCGG 3 cut(s) 90, 111, 447
HgaI GACGC 2 cut(s) 107, 130
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 5 cut(s) 247, 408, 428, 479, 710
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 693
HpaI GTTAAC 1 cut(s) 46
HpaII CCGG 3 cut(s) 90, 111, 447
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 3 cut(s) 46, 145, 410
Hpy188I TCNGA 4 cut(s) 185, 238, 298, 552
Hpy188III TCNNGA 4 cut(s) 209, 338, 575, 586
Hpy8I GTNNAC 3 cut(s) 46, 145, 410
HpyAV CCTTC 3 cut(s) 302, 439, 555
HpyCH4III ACNGT 2 cut(s) 43, 73
HpyCH4V TGCA 6 cut(s) 227, 288, 455, 496, 503, 528
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 380, 425, 682
HpyF3I CTNAG 1 cut(s) 549
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 5 cut(s) 247, 408, 428, 479, 710
KspAI GTTAAC 1 cut(s) 46
Kzo9I GATC 5 cut(s) 246, 293, 300, 322, 619
LmnI GCTCC 3 cut(s) 106, 424, 568
LpnPI CCDG 8 cut(s) 103, 124, 222, 248, 351, 369, 460, 661
Lsp1109I GCAGC 2 cut(s) 300, 508
LweI GCATC 2 cut(s) 264, 591
MaeIII GTNAC 1 cut(s) 538
MalI GATC 5 cut(s) 248, 295, 302, 324, 621
MboI GATC 5 cut(s) 246, 293, 300, 322, 619
MboII GAAGA 3 cut(s) 88, 108, 494
MfeI CAATTG 1 cut(s) 283
MflI RGATCY 2 cut(s) 322, 619
MhlI GDGCHC 3 cut(s) 171, 421, 518
MluCI AATT 1 cut(s) 283
MnlI CCTC 8 cut(s) 88, 116, 130, 364, 432, 546, 559, 607
MseI TTAA 5 cut(s) 36, 45, 216, 366, 642
MslI CAYNNNNRTG 2 cut(s) 210, 403
MspI CCGG 3 cut(s) 90, 111, 447
MspR9I CCNGG 1 cut(s) 448
MunI CAATTG 1 cut(s) 283
Mva1269I GAATGC 2 cut(s) 229, 528
MwoI GCNNNNNNNGC 4 cut(s) 185, 380, 425, 682
NciI CCSGG 1 cut(s) 448
NdeII GATC 5 cut(s) 246, 293, 300, 322, 619
NlaIII CATG 5 cut(s) 247, 408, 428, 479, 710
NmeAIII GCCGAG 3 cut(s) 137, 190, 637
NspI RCATGY 1 cut(s) 710
NspV TTCGAA 1 cut(s) 25
PceI AGGCCT 1 cut(s) 266
PciI ACATGT 1 cut(s) 706
PctI GAATGC 2 cut(s) 229, 528
PkrI GCNGC 5 cut(s) 86, 163, 178, 290, 498
Ple19I CGATCG 1 cut(s) 296
PscI ACATGT 1 cut(s) 706
Psp124BI GAGCTC 2 cut(s) 171, 421
PsuI RGATCY 2 cut(s) 322, 619
PvuI CGATCG 1 cut(s) 296
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
RseI CAYNNNNRTG 2 cut(s) 210, 403
SacI GAGCTC 2 cut(s) 171, 421
SaqAI TTAA 5 cut(s) 36, 45, 216, 366, 642
SatI GCNGC 5 cut(s) 85, 162, 177, 289, 497
Sau3AI GATC 5 cut(s) 246, 293, 300, 322, 619
ScrFI CCNGG 1 cut(s) 448
SduI GDGCHC 3 cut(s) 171, 421, 518
SfaNI GCATC 2 cut(s) 264, 591
SfuI TTCGAA 1 cut(s) 25
SmiMI CAYNNNNRTG 2 cut(s) 210, 403
SmlI CTYRAG 1 cut(s) 468
SmoI CTYRAG 1 cut(s) 468
Sse9I AATT 1 cut(s) 283
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 7 cut(s) 6, 52, 85, 123, 162, 177, 250
SstI GAGCTC 2 cut(s) 171, 421
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 446
TaaI ACNGT 2 cut(s) 43, 73
TaqI TCGA 3 cut(s) 25, 306, 664
TasI AATT 1 cut(s) 283
TatI WGTACW 1 cut(s) 409
TauI GCSGC 3 cut(s) 87, 164, 179
Tru1I TTAA 5 cut(s) 36, 45, 216, 366, 642
Tru9I TTAA 5 cut(s) 36, 45, 216, 366, 642
TscAI CASTG 1 cut(s) 518
TseI GCWGC 2 cut(s) 288, 496
TspDTI ATGAA 2 cut(s) 194, 521
TspRI CASTG 1 cut(s) 518
XceI RCATGY 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.