Rh3DG063900

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0015987
Physical Location & Seq
Reverse (-)
4248900 .. 4250508
1609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG063900.1

Sequence Viewer

Length: 744 bp
ATGGAACGTTTATCAATGTGCGGTAGCGGTAGTGTTGTTCCATTTCGAAAAGCCGTTAAAACCGTTAACTACCGCCACAACTTCAACTTCACGGTGAAGAATAGCCTCACCGGAGAGGATGCTCCCCTCTCCGGTTCTTCCTCTGCTTACTCTATTCTTGGCGTCCACCCAACTTGCTCGGCGGCTGAGCTCAAAGCCGCTTTCCGAGCCAAAGTTAAGCAGTTTCATCCTGATGTTAATAGGAATGCAAAAGGTTCTGATACCATGATCCGCCGTGTCATTCAGGCCTATGAGATGCTATCCAATTTCAGCCGATCGGAGATCATCGAAGGGGAATGTTTAGATCCTTTTGATAATCCAGAATGTGAAGCGTTTGATGTGTTTGTTAATGAGGCTCTTTGTGTTGGAAAAGGTTGTCCATACTCATGTGTACAAAGAGCTCCTCATGCCTTCACTTATGCTTCAACTGGGACTGCAAGAGCGACTTCTCAAGGACATGGAGAAGATTACCAAGTGCAGCTTGCAGTTGGTCAGTGCCCAAGAAGTTGCATTCATTATGTTACACCTTCTCAGAGGATCGTTTTGGAGGAGCTTCTTGACAGCATCTTGATCAAACCTTATGATAGTTCAGCCGAGGCAGATCTGCTATACTCTCTTATAGTTAAAGCCAGGTTTGAGAACAATCGATATCAAAAGCCAAAGAAGCAACCCAAAGCTTCAACACAACAAGTAGATTGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Fer4_15

Protein Analysis

247

Amino Acids

27.45

Weight (kDa)

8.04

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 49 - 103 4.3e-13 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015987)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05345
fragaria_vesca FvH4_7g03590 FvH4_7g03590
malus_domestica MD12G1219200.v1.1
prunus_persica Prupe.6G325800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454761
rosa_laevigata RLG00000025417
rosa_multiflora Rmu_sc0001792.1_g000019
rosa_roxburghii Rroxscaffold_6G00424770
rosa_rugosa Rorug03G0002300
rosa_samantha Rh3AG062300 Rh3BG064200 Rh3CG063100 Rh3DG063900
rosa_wichuraiana Rw3G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 21, 27, 73, 182, 198, 271
AclI AACGTT 1 cut(s) 7
AclWI GGATC 3 cut(s) 262, 338, 584
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 3 cut(s) 85, 465, 720
AjnI CCWGG 1 cut(s) 668
AluBI AGCT 5 cut(s) 190, 440, 520, 592, 716
AluI AGCT 5 cut(s) 190, 440, 520, 592, 716
Alw21I GWGCWC 2 cut(s) 192, 442
AlwI GGATC 3 cut(s) 262, 338, 584
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 517
AsuHPI GGTGA 2 cut(s) 100, 106
AsuII TTCGAA 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 539
BanII GRGCYC 2 cut(s) 192, 442
Bbv12I GWGCWC 2 cut(s) 192, 442
BbvI GCAGC 1 cut(s) 529
BceAI ACGGC 2 cut(s) 38, 258
BciT130I CCWGG 1 cut(s) 670
BclI TGATCA 1 cut(s) 609
BglII AGATCT 1 cut(s) 640
BisI GCNGC 3 cut(s) 183, 198, 518
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 3 cut(s) 184, 199, 519
Bme1390I CCNGG 1 cut(s) 670
BmrFI CCNGG 1 cut(s) 670
BmrI ACTGGG 1 cut(s) 477
BmsI GCATC 3 cut(s) 109, 285, 612
BmuI ACTGGG 1 cut(s) 477
Bpu1102I GCTNAGC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 474
Bsa29I ATCGAT 1 cut(s) 685
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 633
BsaWI WCCGGW 2 cut(s) 110, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 472
BseBI CCWGG 1 cut(s) 670
BseCI ATCGAT 1 cut(s) 685
BseDI CCNNGG 1 cut(s) 633
BseGI GGATG 2 cut(s) 124, 226
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 2 cut(s) 177, 584
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 2 cut(s) 432, 602
BseSI GKGCMC 1 cut(s) 539
BseXI GCAGC 1 cut(s) 529
BsgI GTGCAG 1 cut(s) 536
Bsh1285I CGRYCG 1 cut(s) 317
BshFI GGCC 1 cut(s) 287
BshVI ATCGAT 1 cut(s) 685
BsiEI CGRYCG 1 cut(s) 317
BsiHKAI GWGCWC 2 cut(s) 192, 442
BsiSI CCGG 2 cut(s) 111, 132
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 484
BsmI GAATGC 2 cut(s) 250, 549
BsnI GGCC 1 cut(s) 287
Bsp119I TTCGAA 1 cut(s) 46
Bsp1286I GDGCHC 3 cut(s) 192, 442, 539
Bsp1407I TGTACA 1 cut(s) 430
Bsp143I GATC 7 cut(s) 267, 314, 321, 343, 576, 609, 640
Bsp1720I GCTNAGC 1 cut(s) 186
BspACI CCGC 6 cut(s) 21, 27, 73, 182, 198, 271
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 2 cut(s) 178, 583
BspDI ATCGAT 1 cut(s) 685
BspPI GGATC 3 cut(s) 262, 338, 584
BspT104I TTCGAA 1 cut(s) 46
BsrGI TGTACA 1 cut(s) 430
BsrI ACTGG 1 cut(s) 472
BssECI CCNNGG 1 cut(s) 633
BssMI GATC 7 cut(s) 267, 314, 321, 343, 576, 609, 640
BssNI GRCGYC 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 670
Bst4CI ACNGT 2 cut(s) 64, 94
BstACI GRCGYC 1 cut(s) 162
BstAUI TGTACA 1 cut(s) 430
BstBI TTCGAA 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 522
BstDEI CTNAG 2 cut(s) 186, 570
BstF5I GGATG 2 cut(s) 124, 226
BstKTI GATC 7 cut(s) 270, 317, 324, 346, 579, 612, 643
BstMBI GATC 7 cut(s) 267, 314, 321, 343, 576, 609, 640
BstMCI CGRYCG 1 cut(s) 317
BstMWI GCNNNNNNNGC 3 cut(s) 206, 446, 703
BstNI CCWGG 1 cut(s) 670
BstSCI CCNGG 1 cut(s) 668
BstSLI GKGCMC 1 cut(s) 539
BstV1I GCAGC 1 cut(s) 529
BstX2I RGATCY 2 cut(s) 343, 640
BstYI RGATCY 2 cut(s) 343, 640
Bsu15I ATCGAT 1 cut(s) 685
BsuRI GGCC 1 cut(s) 287
BsuTUI ATCGAT 1 cut(s) 685
BtsCI GGATG 2 cut(s) 124, 226
BtsIMutI CAGTG 1 cut(s) 539
Cac8I GCNNGC 1 cut(s) 522
ClaI ATCGAT 1 cut(s) 685
CseI GACGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 431
CspCI CAANNNNNGTGG 2 cut(s) 155, 190
CviAII CATG 4 cut(s) 265, 426, 446, 497
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 2 cut(s) 186, 570
DpnI GATC 7 cut(s) 269, 316, 323, 345, 578, 611, 642
DpnII GATC 7 cut(s) 267, 314, 321, 343, 576, 609, 640
EciI GGCGGA 1 cut(s) 260
Ecl136II GAGCTC 2 cut(s) 190, 440
Eco147I AGGCCT 1 cut(s) 287
Eco24I GRGCYC 2 cut(s) 192, 442
Eco32I GATATC 1 cut(s) 689
Eco53kI GAGCTC 2 cut(s) 190, 440
EcoICRI GAGCTC 2 cut(s) 190, 440
EcoRII CCWGG 1 cut(s) 668
EcoRV GATATC 1 cut(s) 689
EcoT38I GRGCYC 2 cut(s) 192, 442
FaeI CATG 4 cut(s) 268, 429, 449, 500
FalI AAGNNNNNCTT 4 cut(s) 469, 501, 504, 536
FaqI GGGAC 1 cut(s) 484
FatI CATG 4 cut(s) 264, 425, 445, 496
FbaI TGATCA 1 cut(s) 609
Fnu4HI GCNGC 3 cut(s) 183, 198, 518
FokI GGATG 2 cut(s) 131, 213
FriOI GRGCYC 2 cut(s) 192, 442
Fsp4HI GCNGC 3 cut(s) 183, 198, 518
GluI GCNGC 3 cut(s) 183, 198, 518
HaeIII GGCC 1 cut(s) 287
HapII CCGG 2 cut(s) 111, 132
HgaI GACGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 4 cut(s) 268, 429, 449, 500
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 714
HpaI GTTAAC 1 cut(s) 67
HpaII CCGG 2 cut(s) 111, 132
HphI GGTGA 2 cut(s) 100, 106
Hpy166II GTNNAC 3 cut(s) 67, 166, 431
Hpy188I TCNGA 4 cut(s) 206, 259, 319, 573
Hpy188III TCNNGA 4 cut(s) 230, 359, 596, 607
Hpy8I GTNNAC 3 cut(s) 67, 166, 431
HpyAV CCTTC 3 cut(s) 323, 460, 576
HpyCH4III ACNGT 2 cut(s) 64, 94
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 5 cut(s) 248, 476, 517, 524, 549
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 446, 703
HpyF3I CTNAG 2 cut(s) 186, 570
HpySE526I ACGT 1 cut(s) 7
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 4 cut(s) 268, 429, 449, 500
Ksp22I TGATCA 1 cut(s) 609
KspAI GTTAAC 1 cut(s) 67
Kzo9I GATC 7 cut(s) 267, 314, 321, 343, 576, 609, 640
LmnI GCTCC 3 cut(s) 127, 445, 589
LpnPI CCDG 8 cut(s) 124, 145, 243, 269, 372, 453, 655, 682
Lsp1109I GCAGC 1 cut(s) 529
LweI GCATC 3 cut(s) 109, 285, 612
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 1 cut(s) 559
MalI GATC 7 cut(s) 269, 316, 323, 345, 578, 611, 642
MboI GATC 7 cut(s) 267, 314, 321, 343, 576, 609, 640
MboII GAAGA 3 cut(s) 109, 129, 515
MflI RGATCY 2 cut(s) 343, 640
MhlI GDGCHC 3 cut(s) 192, 442, 539
MluCI AATT 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 9 cut(s) 109, 116, 137, 151, 385, 453, 567, 580, 628
MseI TTAA 6 cut(s) 57, 66, 216, 237, 387, 663
MslI CAYNNNNRTG 2 cut(s) 231, 424
MspI CCGG 2 cut(s) 111, 132
MspR9I CCNGG 1 cut(s) 670
Mva1269I GAATGC 2 cut(s) 250, 549
MvaI CCWGG 1 cut(s) 670
MwoI GCNNNNNNNGC 3 cut(s) 206, 446, 703
NdeII GATC 7 cut(s) 267, 314, 321, 343, 576, 609, 640
NlaIII CATG 4 cut(s) 268, 429, 449, 500
NmeAIII GCCGAG 2 cut(s) 158, 658
NspV TTCGAA 1 cut(s) 46
PceI AGGCCT 1 cut(s) 287
PctI GAATGC 2 cut(s) 250, 549
PkrI GCNGC 3 cut(s) 184, 199, 519
Ple19I CGATCG 1 cut(s) 317
Psp124BI GAGCTC 2 cut(s) 192, 442
Psp1406I AACGTT 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 668
PspGI CCWGG 1 cut(s) 668
PsuI RGATCY 2 cut(s) 343, 640
PvuI CGATCG 1 cut(s) 317
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
RseI CAYNNNNRTG 2 cut(s) 231, 424
SacI GAGCTC 2 cut(s) 192, 442
SaqAI TTAA 6 cut(s) 57, 66, 216, 237, 387, 663
SatI GCNGC 3 cut(s) 183, 198, 518
Sau3AI GATC 7 cut(s) 267, 314, 321, 343, 576, 609, 640
ScrFI CCNGG 1 cut(s) 670
SduI GDGCHC 3 cut(s) 192, 442, 539
SfaNI GCATC 3 cut(s) 109, 285, 612
SfuI TTCGAA 1 cut(s) 46
SmiMI CAYNNNNRTG 2 cut(s) 231, 424
SmlI CTYRAG 1 cut(s) 489
SmoI CTYRAG 1 cut(s) 489
Sse9I AATT 1 cut(s) 304
SseBI AGGCCT 1 cut(s) 287
SsiI CCGC 6 cut(s) 21, 27, 73, 182, 198, 271
SstI GAGCTC 2 cut(s) 192, 442
StuI AGGCCT 1 cut(s) 287
StyD4I CCNGG 1 cut(s) 668
TaaI ACNGT 2 cut(s) 64, 94
TaiI ACGT 1 cut(s) 10
TaqI TCGA 3 cut(s) 46, 327, 685
TasI AATT 1 cut(s) 304
TatI WGTACW 1 cut(s) 430
TauI GCSGC 2 cut(s) 185, 200
Tru1I TTAA 6 cut(s) 57, 66, 216, 237, 387, 663
Tru9I TTAA 6 cut(s) 57, 66, 216, 237, 387, 663
TscAI CASTG 1 cut(s) 539
TseI GCWGC 1 cut(s) 517
TspDTI ATGAA 2 cut(s) 215, 542
TspRI CASTG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.