FvH4_7g03590

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015987
Physical Location & Seq
Forward (+)
3966382 .. 3968488
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03590.t1

Sequence Viewer

Length: 744 bp
ATGGAACGTTTATCACTTTGCACTAGTCTTGTTCCATTTCGAAAAGCCATTAAAACCGTTAACCGCCGCGGTTGCAACTTCACGGTGACGAATTGCAGCGGTGGCCACGGCGGGGAGGATGCTCCCCTCTCAGGTTCTTCCTCCGCTTACTCTGTTCTTGGTGTCCACCCAACATGCTCACAGGCCGAGCTGAAAGCTGCTTTCCGAGCCAGAGTGAAGGAGTTTCATCCTGATGTTAATAGGAATCGAAAAGGTTCTGATACCATGATCCGCCGTGTTATTAAGGCATATGAGATGCTATCCAATTTCAGCCGATCAGAGATCATCGAAGAGGAATGTTTAGATCCTTTTGATAATCCAGAATGTGAAGCGTTTGATGTTTTTGTGAATGAGGCCTTCTGTGTTGGAAAAGGTTGTCCATACTCATGTGTACAAAGGGCTCCTCATGCCTTCACCTATGCTTCAACTGGGACTGCAAGAGCGACTTCTCAAGGACATGGAGAAGATTACCAAGTTCAGCTTGCAGTTGGTCAGTGCCCAAGAAGCTGCATTCATTATGTTACACCTTCTCAGAGGGATGTTTTGGAGGAGCTACTTGACAGCATCTTGAACACACCTTTTGATAATTCAGCTGAGGTGGATCTGCTATACTCTCTTATAGTTAAAGCCAGGTTTGAGAACGATCGATATCGAAAGCCAAAGAAGCCACCCAAAGCTTCAACAGAACATGTAGATTGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Fer4_15

Protein Analysis

248

Amino Acids

27.57

Weight (kDa)

6.65

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 49 - 103 3.7e-13 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015987)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05345
fragaria_vesca FvH4_7g03590 FvH4_7g03590
malus_domestica MD12G1219200.v1.1
prunus_persica Prupe.6G325800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454761
rosa_laevigata RLG00000025417
rosa_multiflora Rmu_sc0001792.1_g000019
rosa_roxburghii Rroxscaffold_6G00424770
rosa_rugosa Rorug03G0002300
rosa_samantha Rh3AG062300 Rh3BG064200 Rh3CG063100 Rh3DG063900
rosa_wichuraiana Rw3G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 69
AciI CCGC 7 cut(s) 64, 67, 69, 99, 111, 144, 271
AclI AACGTT 1 cut(s) 7
AclWI GGATC 3 cut(s) 262, 338, 648
AcoI YGGCCR 1 cut(s) 103
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 2 cut(s) 112, 131
AflIII ACRYGT 1 cut(s) 727
AgsI TTSAA 3 cut(s) 465, 610, 720
AhlI ACTAGT 1 cut(s) 23
AjnI CCWGG 1 cut(s) 668
AluBI AGCT 7 cut(s) 190, 197, 520, 546, 592, 632, 716
AluI AGCT 7 cut(s) 190, 197, 520, 546, 592, 632, 716
AlwI GGATC 3 cut(s) 262, 338, 648
AoxI GGCC 3 cut(s) 103, 183, 393
ApeKI GCWGC 3 cut(s) 96, 197, 546
Asp700I GAANNNNTTC 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 97, 445
AsuII TTCGAA 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 539
BalI TGGCCA 1 cut(s) 105
BanII GRGCYC 1 cut(s) 442
BbvCI CCTCAGC 1 cut(s) 633
BbvI GCAGC 3 cut(s) 108, 184, 533
BceAI ACGGC 2 cut(s) 124, 258
BciT130I CCWGG 1 cut(s) 670
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 1 cut(s) 24
BisI GCNGC 4 cut(s) 67, 97, 198, 547
BlsI GCNGC 4 cut(s) 68, 98, 199, 548
Bme1390I CCNGG 1 cut(s) 670
BmiI GGNNCC 1 cut(s) 441
BmrFI CCNGG 1 cut(s) 670
BmrI ACTGGG 1 cut(s) 477
BmsI GCATC 3 cut(s) 109, 285, 612
BmuI ACTGGG 1 cut(s) 477
Bpu10I CCTNAGC 1 cut(s) 633
Bpu14I TTCGAA 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 474
Bsa29I ATCGAT 1 cut(s) 685
BsaBI GATNNNNATC 1 cut(s) 687
BsaJI CCNNGG 2 cut(s) 67, 106
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 131
Bse1I ACTGG 1 cut(s) 472
Bse8I GATNNNNATC 1 cut(s) 687
BseBI CCWGG 1 cut(s) 670
BseCI ATCGAT 1 cut(s) 685
BseDI CCNNGG 2 cut(s) 67, 106
BseGI GGATG 3 cut(s) 124, 226, 583
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 2 cut(s) 112, 131
BseMII CTCAG 3 cut(s) 144, 584, 624
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 2 cut(s) 432, 602
BseSI GKGCMC 1 cut(s) 539
BseXI GCAGC 3 cut(s) 108, 184, 533
Bsh1236I CGCG 1 cut(s) 69
Bsh1285I CGRYCG 1 cut(s) 685
BshFI GGCC 3 cut(s) 105, 185, 395
BshVI ATCGAT 1 cut(s) 685
BsiEI CGRYCG 1 cut(s) 685
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 2 cut(s) 112, 131
BsmFI GGGAC 1 cut(s) 484
BsmI GAATGC 1 cut(s) 549
BsnI GGCC 3 cut(s) 105, 185, 395
Bsp119I TTCGAA 1 cut(s) 40
Bsp1286I GDGCHC 2 cut(s) 442, 539
Bsp1407I TGTACA 1 cut(s) 430
Bsp143I GATC 6 cut(s) 267, 314, 321, 343, 640, 682
BspACI CCGC 7 cut(s) 64, 67, 69, 99, 111, 144, 271
BspANI GGCC 3 cut(s) 105, 185, 395
BspCNI CTCAG 3 cut(s) 143, 583, 625
BspDI ATCGAT 1 cut(s) 685
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 441
BspPI GGATC 3 cut(s) 262, 338, 648
BspT104I TTCGAA 1 cut(s) 40
BsrGI TGTACA 1 cut(s) 430
BsrI ACTGG 1 cut(s) 472
BssECI CCNNGG 2 cut(s) 67, 106
BssMI GATC 6 cut(s) 267, 314, 321, 343, 640, 682
Bst2UI CCWGG 1 cut(s) 670
Bst4CI ACNGT 2 cut(s) 58, 85
Bst6I CTCTTC 1 cut(s) 324
BstAUI TGTACA 1 cut(s) 430
BstBI TTCGAA 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 522
BstDEI CTNAG 3 cut(s) 130, 570, 633
BstDSI CCRYGG 2 cut(s) 67, 106
BstF5I GGATG 3 cut(s) 124, 226, 583
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 6 cut(s) 270, 317, 324, 346, 643, 685
BstMBI GATC 6 cut(s) 267, 314, 321, 343, 640, 682
BstMCI CGRYCG 1 cut(s) 685
BstMWI GCNNNNNNNGC 6 cut(s) 72, 102, 206, 446, 543, 703
BstNI CCWGG 1 cut(s) 670
BstNSI RCATGY 2 cut(s) 177, 731
BstSCI CCNGG 1 cut(s) 668
BstSLI GKGCMC 1 cut(s) 539
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 3 cut(s) 108, 184, 533
BstX2I RGATCY 2 cut(s) 343, 640
BstYI RGATCY 2 cut(s) 343, 640
Bsu15I ATCGAT 1 cut(s) 685
BsuRI GGCC 3 cut(s) 105, 185, 395
BsuTUI ATCGAT 1 cut(s) 685
BtgI CCRYGG 2 cut(s) 67, 106
BtsCI GGATG 3 cut(s) 124, 226, 583
BtsIMutI CAGTG 1 cut(s) 539
Cac8I GCNNGC 1 cut(s) 522
Cfr42I CCGCGG 1 cut(s) 70
ClaI ATCGAT 1 cut(s) 685
Csp6I GTAC 1 cut(s) 431
CviAII CATG 6 cut(s) 174, 265, 426, 446, 497, 728
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 3 cut(s) 130, 570, 633
DpnI GATC 6 cut(s) 269, 316, 323, 345, 642, 684
DpnII GATC 6 cut(s) 267, 314, 321, 343, 640, 682
EaeI YGGCCR 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
EciI GGCGGA 1 cut(s) 260
Eco147I AGGCCT 1 cut(s) 395
Eco24I GRGCYC 1 cut(s) 442
Eco32I GATATC 1 cut(s) 689
EcoRII CCWGG 1 cut(s) 668
EcoRV GATATC 1 cut(s) 689
EcoT38I GRGCYC 1 cut(s) 442
FaeI CATG 6 cut(s) 177, 268, 429, 449, 500, 731
FalI AAGNNNNNCTT 4 cut(s) 469, 501, 504, 536
FaqI GGGAC 1 cut(s) 484
FatI CATG 6 cut(s) 173, 264, 425, 445, 496, 727
FauI CCCGC 1 cut(s) 104
FauNDI CATATG 1 cut(s) 289
Fnu4HI GCNGC 4 cut(s) 67, 97, 198, 547
FokI GGATG 3 cut(s) 131, 213, 590
FriOI GRGCYC 1 cut(s) 442
Fsp4HI GCNGC 4 cut(s) 67, 97, 198, 547
FspBI CTAG 1 cut(s) 24
GluI GCNGC 4 cut(s) 67, 97, 198, 547
HaeIII GGCC 3 cut(s) 105, 185, 395
Hin1II CATG 6 cut(s) 177, 268, 429, 449, 500, 731
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 714
HinfI GANTC 1 cut(s) 244
HpaI GTTAAC 1 cut(s) 61
HphI GGTGA 2 cut(s) 97, 445
Hpy166II GTNNAC 3 cut(s) 61, 166, 431
Hpy188I TCNGA 4 cut(s) 206, 259, 319, 573
Hpy188III TCNNGA 3 cut(s) 230, 359, 607
Hpy8I GTNNAC 3 cut(s) 61, 166, 431
HpyAV CCTTC 4 cut(s) 211, 406, 460, 576
HpyCH4III ACNGT 2 cut(s) 58, 85
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 6 cut(s) 21, 75, 96, 476, 524, 549
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 102, 206, 446, 543, 703
HpyF3I CTNAG 3 cut(s) 130, 570, 633
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 6 cut(s) 177, 268, 429, 449, 500, 731
KspAI GTTAAC 1 cut(s) 61
KspI CCGCGG 1 cut(s) 70
Kzo9I GATC 6 cut(s) 267, 314, 321, 343, 640, 682
LmnI GCTCC 3 cut(s) 127, 445, 589
LpnPI CCDG 8 cut(s) 117, 167, 223, 243, 372, 453, 655, 682
Lsp1109I GCAGC 3 cut(s) 108, 184, 533
LweI GCATC 3 cut(s) 109, 285, 612
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 2 cut(s) 85, 559
MalI GATC 6 cut(s) 269, 316, 323, 345, 642, 684
MboI GATC 6 cut(s) 267, 314, 321, 343, 640, 682
MboII GAAGA 3 cut(s) 129, 341, 515
MflI RGATCY 2 cut(s) 343, 640
MhlI GDGCHC 2 cut(s) 442, 539
MlsI TGGCCA 1 cut(s) 105
MluCI AATT 3 cut(s) 91, 304, 625
MluNI TGGCCA 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 9 cut(s) 109, 137, 151, 325, 385, 453, 567, 580, 628
Mox20I TGGCCA 1 cut(s) 105
MroXI GAANNNNTTC 1 cut(s) 253
MscI TGGCCA 1 cut(s) 105
MseI TTAA 5 cut(s) 51, 60, 237, 282, 663
MslI CAYNNNNRTG 2 cut(s) 231, 424
Msp20I TGGCCA 1 cut(s) 105
MspA1I CMGCKG 3 cut(s) 69, 99, 632
MspR9I CCNGG 1 cut(s) 670
Mva1269I GAATGC 1 cut(s) 549
MvaI CCWGG 1 cut(s) 670
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 6 cut(s) 72, 102, 206, 446, 543, 703
NdeI CATATG 1 cut(s) 289
NdeII GATC 6 cut(s) 267, 314, 321, 343, 640, 682
NlaIII CATG 6 cut(s) 177, 268, 429, 449, 500, 731
NlaIV GGNNCC 1 cut(s) 441
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 2 cut(s) 177, 731
NspV TTCGAA 1 cut(s) 40
PceI AGGCCT 1 cut(s) 395
PciI ACATGT 1 cut(s) 727
PctI GAATGC 1 cut(s) 549
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 4 cut(s) 68, 98, 199, 548
Ple19I CGATCG 1 cut(s) 685
PscI ACATGT 1 cut(s) 727
Psp1406I AACGTT 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 668
PspGI CCWGG 1 cut(s) 668
PspN4I GGNNCC 1 cut(s) 441
PsuI RGATCY 2 cut(s) 343, 640
PvuI CGATCG 1 cut(s) 685
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
RseI CAYNNNNRTG 2 cut(s) 231, 424
SacII CCGCGG 1 cut(s) 70
SaqAI TTAA 5 cut(s) 51, 60, 237, 282, 663
SatI GCNGC 4 cut(s) 67, 97, 198, 547
Sau3AI GATC 6 cut(s) 267, 314, 321, 343, 640, 682
ScrFI CCNGG 1 cut(s) 670
SduI GDGCHC 2 cut(s) 442, 539
SfaNI GCATC 3 cut(s) 109, 285, 612
Sfr303I CCGCGG 1 cut(s) 70
SfuI TTCGAA 1 cut(s) 40
SgrBI CCGCGG 1 cut(s) 70
SmiMI CAYNNNNRTG 2 cut(s) 231, 424
SmlI CTYRAG 1 cut(s) 489
SmoI CTYRAG 1 cut(s) 489
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 3 cut(s) 91, 304, 625
SseBI AGGCCT 1 cut(s) 395
SsiI CCGC 7 cut(s) 64, 67, 69, 99, 111, 144, 271
SspMI CTAG 1 cut(s) 24
StuI AGGCCT 1 cut(s) 395
StyD4I CCNGG 1 cut(s) 668
TaaI ACNGT 2 cut(s) 58, 85
TaiI ACGT 1 cut(s) 10
TaqI TCGA 5 cut(s) 40, 247, 327, 685, 691
TasI AATT 3 cut(s) 91, 304, 625
TatI WGTACW 1 cut(s) 430
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 5 cut(s) 51, 60, 237, 282, 663
Tru9I TTAA 5 cut(s) 51, 60, 237, 282, 663
TscAI CASTG 1 cut(s) 539
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 3 cut(s) 96, 197, 546
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 215, 542
TspRI CASTG 1 cut(s) 539
XceI RCATGY 2 cut(s) 177, 731
XmnI GAANNNNTTC 1 cut(s) 253
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.