Prupe.6G325800_v2.0.a1

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015987
Physical Location & Seq
Forward (+)
28654734 .. 28656784
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G325800.1

Sequence Viewer

Length: 744 bp
ATGGAACGTTTATCCGTGTGCGGTTGGACACCTCCAATTTTTCCATTTCAAAAAGCCGTTAAAACTCACCGCGGTCACAAATTCACACTGAAGAATTGCAGAGAGCGCACCGGAGAGGATGCTCCTCCCTCCGGTACTTCATCCGCTTTCGCTATTCTCGGCGTCCAGCCAACCTGCTCAGCCACCGAGCTTAAAGCCGCTTTCCGCGCCAAAGTGAAGCAGTTTCATCCTGATGTAAATAGGACTGGGAAAGATTCTGGTGTGATGATTCGCCGTGTAATTCAGGCCTATGAGATGTTATCAAATTACAGCCGATCGGAGATAATTGAAAGGGAATGTGTAGATCCCTTTGATAATCCAGAATGTGAAGCATTTGATGTTTTCGTTAACGAGGTTCTTTGTGTTGGAAAAGGTTGTCCATATTCATGTGTACAAAGAGCTCCTCATGCCTTCACTTATGCTTCAACCGGGACAGCGAGAGCAGCTTCTCCAGGAGTTGGGGATGATTACCAAGTTCAGCTTGCAGTTGGTCAGTGCCCAAGAAGTTGCATTCATTATGTTACACCTTTACAGAGAATTATCTTGGAGGAGTTACTTGACAGTATCTTGAACATGCCTTATGATAGTTCAGCCGAGGCAGATTTGCTATACTCGCTTATAGTTAAAGCCAGGTTTGAGAACAATCGGTATCGAAAGCCGAAGAAGCAACCCAAAGCTTCAACACAACATGTAGACTGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Fer4_15

Protein Analysis

248

Amino Acids

27.69

Weight (kDa)

8.49

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015987)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05345
fragaria_vesca FvH4_7g03590 FvH4_7g03590
malus_domestica MD12G1219200.v1.1
prunus_persica Prupe.6G325800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454761
rosa_laevigata RLG00000025417
rosa_multiflora Rmu_sc0001792.1_g000019
rosa_roxburghii Rroxscaffold_6G00424770
rosa_rugosa Rorug03G0002300
rosa_samantha Rh3AG062300 Rh3BG064200 Rh3CG063100 Rh3DG063900
rosa_wichuraiana Rw3G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 182
AccB7I CCANNNNNTGG 1 cut(s) 497
AccI GTMKAC 1 cut(s) 732
AccII CGCG 2 cut(s) 72, 207
AciI CCGC 6 cut(s) 21, 70, 72, 144, 198, 205
AclI AACGTT 1 cut(s) 7
AclWI GGATC 1 cut(s) 338
AcsI RAATTY 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 2 cut(s) 136, 432
AfiI CCNNNNNNNGG 2 cut(s) 131, 497
AflIII ACRYGT 1 cut(s) 727
AgsI TTSAA 5 cut(s) 50, 329, 465, 610, 720
AjnI CCWGG 2 cut(s) 490, 668
AluBI AGCT 5 cut(s) 190, 440, 485, 520, 716
AluI AGCT 5 cut(s) 190, 440, 485, 520, 716
Alw21I GWGCWC 1 cut(s) 442
AlwI GGATC 1 cut(s) 338
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 482
ApoI RAATTY 1 cut(s) 80
AspLEI GCGC 2 cut(s) 108, 209
AsuC2I CCSGG 1 cut(s) 469
AsuHPI GGTGA 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 539
BanII GRGCYC 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 442
BbvI GCAGC 1 cut(s) 494
BceAI ACGGC 2 cut(s) 41, 258
BciT130I CCWGG 2 cut(s) 492, 670
BcnI CCSGG 1 cut(s) 469
BfuAI ACCTGC 1 cut(s) 182
BisI GCNGC 2 cut(s) 198, 483
BlpI GCTNAGC 1 cut(s) 178
BlsI GCNGC 2 cut(s) 199, 484
Bme1390I CCNGG 3 cut(s) 469, 492, 670
BmrFI CCNGG 3 cut(s) 469, 492, 670
BmrI ACTGGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 255
BpmI CTGGAG 1 cut(s) 474
Bpu1102I GCTNAGC 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 469
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 70, 633
BsaWI WCCGGW 2 cut(s) 110, 131
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 497
Bse1I ACTGG 2 cut(s) 250, 740
BseBI CCWGG 2 cut(s) 492, 670
BseDI CCNNGG 2 cut(s) 70, 633
BseGI GGATG 4 cut(s) 124, 140, 226, 508
BseLI CCNNNNNNNGG 2 cut(s) 131, 497
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 2 cut(s) 250, 740
BseRI GAGGAG 3 cut(s) 114, 432, 602
BseSI GKGCMC 1 cut(s) 539
BseXI GCAGC 1 cut(s) 494
Bsh1236I CGCG 2 cut(s) 72, 207
Bsh1285I CGRYCG 1 cut(s) 317
BshFI GGCC 1 cut(s) 287
BsiEI CGRYCG 1 cut(s) 317
BsiHKAI GWGCWC 1 cut(s) 442
BsiSI CCGG 3 cut(s) 111, 132, 468
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 2 cut(s) 131, 497
BsmFI GGGAC 1 cut(s) 484
BsmI GAATGC 1 cut(s) 549
BsnI GGCC 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 442, 539
Bsp1407I TGTACA 1 cut(s) 430
Bsp143I GATC 2 cut(s) 314, 343
Bsp1720I GCTNAGC 1 cut(s) 178
BspACI CCGC 6 cut(s) 21, 70, 72, 144, 198, 205
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 1 cut(s) 191
BspFNI CGCG 2 cut(s) 72, 207
BspMI ACCTGC 1 cut(s) 182
BspPI GGATC 1 cut(s) 338
BsrGI TGTACA 1 cut(s) 430
BsrI ACTGG 2 cut(s) 250, 740
BssECI CCNNGG 2 cut(s) 70, 633
BssMI GATC 2 cut(s) 314, 343
BssNI GRCGYC 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 492, 670
Bst4CI ACNGT 1 cut(s) 602
BstACI GRCGYC 1 cut(s) 162
BstAUI TGTACA 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 522
BstDEI CTNAG 1 cut(s) 178
BstDSI CCRYGG 1 cut(s) 70
BstF5I GGATG 4 cut(s) 124, 140, 226, 508
BstFNI CGCG 2 cut(s) 72, 207
BstHHI GCGC 2 cut(s) 108, 209
BstKTI GATC 2 cut(s) 317, 346
BstMBI GATC 2 cut(s) 314, 343
BstMCI CGRYCG 1 cut(s) 317
BstMWI GCNNNNNNNGC 6 cut(s) 105, 206, 446, 482, 652, 703
BstNI CCWGG 2 cut(s) 492, 670
BstNSI RCATGY 2 cut(s) 616, 731
BstSCI CCNGG 3 cut(s) 467, 490, 668
BstSLI GKGCMC 1 cut(s) 539
BstUI CGCG 2 cut(s) 72, 207
BstV1I GCAGC 1 cut(s) 494
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 1 cut(s) 287
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 4 cut(s) 124, 140, 226, 508
BtsIMutI CAGTG 2 cut(s) 86, 539
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 522
CfoI GCGC 2 cut(s) 108, 209
Cfr42I CCGCGG 1 cut(s) 73
CseI GACGC 1 cut(s) 151
Csp6I GTAC 2 cut(s) 135, 431
CviAII CATG 4 cut(s) 426, 446, 613, 728
CviQI GTAC 2 cut(s) 135, 431
DdeI CTNAG 1 cut(s) 178
DpnI GATC 2 cut(s) 316, 345
DpnII GATC 2 cut(s) 314, 343
Ecl136II GAGCTC 1 cut(s) 440
Eco147I AGGCCT 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 442
Eco53kI GAGCTC 1 cut(s) 440
Eco57I CTGAAG 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 440
EcoRII CCWGG 2 cut(s) 490, 668
EcoT38I GRGCYC 1 cut(s) 442
FaeI CATG 4 cut(s) 429, 449, 616, 731
FalI AAGNNNNNCTT 2 cut(s) 504, 536
FaqI GGGAC 1 cut(s) 484
FatI CATG 4 cut(s) 425, 445, 612, 727
FblI GTMKAC 1 cut(s) 732
Fnu4HI GCNGC 2 cut(s) 198, 483
FokI GGATG 4 cut(s) 127, 131, 213, 515
FriOI GRGCYC 1 cut(s) 442
Fsp4HI GCNGC 2 cut(s) 198, 483
GlaI GCGC 2 cut(s) 107, 208
GluI GCNGC 2 cut(s) 198, 483
GsuI CTGGAG 1 cut(s) 474
HaeIII GGCC 1 cut(s) 287
HapII CCGG 3 cut(s) 111, 132, 468
HgaI GACGC 1 cut(s) 151
HhaI GCGC 2 cut(s) 108, 209
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 4 cut(s) 429, 449, 616, 731
Hin6I GCGC 2 cut(s) 106, 207
HinP1I GCGC 2 cut(s) 106, 207
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 714
HinfI GANTC 2 cut(s) 254, 268
HpaI GTTAAC 1 cut(s) 388
HpaII CCGG 3 cut(s) 111, 132, 468
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 3 cut(s) 388, 431, 733
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 3 cut(s) 230, 359, 607
Hpy8I GTNNAC 3 cut(s) 388, 431, 733
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 1 cut(s) 602
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 3 cut(s) 99, 524, 549
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 206, 446, 482, 652, 703
HpyF3I CTNAG 1 cut(s) 178
HpySE526I ACGT 1 cut(s) 7
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 4 cut(s) 429, 449, 616, 731
HspAI GCGC 2 cut(s) 106, 207
KspAI GTTAAC 1 cut(s) 388
KspI CCGCGG 1 cut(s) 73
Kzo9I GATC 2 cut(s) 314, 343
LmnI GCTCC 2 cut(s) 127, 445
Lsp1109I GCAGC 1 cut(s) 494
LweI GCATC 1 cut(s) 109
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 3 cut(s) 74, 559, 591
MalI GATC 2 cut(s) 316, 345
MboI GATC 2 cut(s) 314, 343
MboII GAAGA 2 cut(s) 103, 712
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 2 cut(s) 442, 539
MluCI AATT 7 cut(s) 36, 80, 94, 279, 304, 324, 576
MmeI TCCRAC 2 cut(s) 5, 385
MnlI CCTC 8 cut(s) 42, 109, 135, 139, 385, 453, 580, 628
MseI TTAA 4 cut(s) 60, 192, 387, 663
MslI CAYNNNNRTG 2 cut(s) 231, 424
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 3 cut(s) 111, 132, 468
MspR9I CCNGG 3 cut(s) 469, 492, 670
Mva1269I GAATGC 1 cut(s) 549
MvaI CCWGG 2 cut(s) 492, 670
MvnI CGCG 2 cut(s) 72, 207
MwoI GCNNNNNNNGC 6 cut(s) 105, 206, 446, 482, 652, 703
NciI CCSGG 1 cut(s) 469
NdeII GATC 2 cut(s) 314, 343
NlaIII CATG 4 cut(s) 429, 449, 616, 731
NmeAIII GCCGAG 2 cut(s) 138, 658
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 2 cut(s) 616, 731
PceI AGGCCT 1 cut(s) 287
PciI ACATGT 1 cut(s) 727
PctI GAATGC 1 cut(s) 549
PfeI GAWTC 2 cut(s) 254, 268
PflMI CCANNNNNTGG 1 cut(s) 497
PfoI TCCNGGA 1 cut(s) 490
PkrI GCNGC 2 cut(s) 199, 484
Ple19I CGATCG 1 cut(s) 317
PscI ACATGT 1 cut(s) 727
Psp124BI GAGCTC 1 cut(s) 442
Psp1406I AACGTT 1 cut(s) 7
Psp6I CCWGG 2 cut(s) 490, 668
PspGI CCWGG 2 cut(s) 490, 668
PsuI RGATCY 1 cut(s) 343
PvuI CGATCG 1 cut(s) 317
RsaI GTAC 2 cut(s) 136, 432
RsaNI GTAC 2 cut(s) 135, 431
RseI CAYNNNNRTG 2 cut(s) 231, 424
SacI GAGCTC 1 cut(s) 442
SacII CCGCGG 1 cut(s) 73
SaqAI TTAA 4 cut(s) 60, 192, 387, 663
SatI GCNGC 2 cut(s) 198, 483
Sau3AI GATC 2 cut(s) 314, 343
ScrFI CCNGG 3 cut(s) 469, 492, 670
SduI GDGCHC 2 cut(s) 442, 539
SfaNI GCATC 1 cut(s) 109
Sfr303I CCGCGG 1 cut(s) 73
SgrBI CCGCGG 1 cut(s) 73
SmiMI CAYNNNNRTG 2 cut(s) 231, 424
Sse9I AATT 7 cut(s) 36, 80, 94, 279, 304, 324, 576
SseBI AGGCCT 1 cut(s) 287
SsiI CCGC 6 cut(s) 21, 70, 72, 144, 198, 205
SstI GAGCTC 1 cut(s) 442
StuI AGGCCT 1 cut(s) 287
StyD4I CCNGG 3 cut(s) 467, 490, 668
TaaI ACNGT 1 cut(s) 602
TaiI ACGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 691
TasI AATT 7 cut(s) 36, 80, 94, 279, 304, 324, 576
TatI WGTACW 1 cut(s) 430
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 2 cut(s) 254, 268
Tru1I TTAA 4 cut(s) 60, 192, 387, 663
Tru9I TTAA 4 cut(s) 60, 192, 387, 663
TscAI CASTG 2 cut(s) 93, 539
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 1 cut(s) 482
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 4 cut(s) 129, 215, 414, 542
TspGWI ACGGA 1 cut(s) 4
TspRI CASTG 2 cut(s) 93, 539
Van91I CCANNNNNTGG 1 cut(s) 497
XapI RAATTY 1 cut(s) 80
XceI RCATGY 2 cut(s) 616, 731
XmiI GTMKAC 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.