Rroxscaffold_6G00424770

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015987
Physical Location & Seq
Forward (+)
45921440 .. 45924449
3010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00424770.1

Sequence Viewer

Length: 306 bp
ATGTGCAGCAGTGTTGTTCCATTTCGAAAAGCCGTTAAAACCGTTAACCACAGCCACAAATTCAACTTCGCGGTGAAGAATAGCCTCACCGGAGAGGACGCTCCCCTCTCTGGTGCTTCCTCCGCTTACTCTATTCCTGGCAATAATAGGAATGCAAAAGGTTCTGATACCATGATCCGCCTTGTCATTCAGGCCTATGAGGACATGGACAAGATTTCCAAGTGCAGCTTGCAGTTGGTCAGTGCTCAAGAAGTTGCATCCATTACGTACACCTTCTCAGAGGATTGGTTTGGAGAAGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Fer4_15

Protein Analysis

101

Amino Acids

10.98

Weight (kDa)

6.71

Isoelectric Point (pI)

25.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015987)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05345
fragaria_vesca FvH4_7g03590 FvH4_7g03590
malus_domestica MD12G1219200.v1.1
prunus_persica Prupe.6G325800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454761
rosa_laevigata RLG00000025417
rosa_multiflora Rmu_sc0001792.1_g000019
rosa_roxburghii Rroxscaffold_6G00424770
rosa_rugosa Rorug03G0002300
rosa_samantha Rh3AG062300 Rh3BG064200 Rh3CG063100 Rh3DG063900
rosa_wichuraiana Rw3G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 71
AciI CCGC 3 cut(s) 71, 123, 178
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 1 cut(s) 59
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 1 cut(s) 64
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 2 cut(s) 228, 299
AluI AGCT 2 cut(s) 228, 299
Alw21I GWGCWC 1 cut(s) 247
AlwI GGATC 1 cut(s) 169
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 6, 225
ApoI RAATTY 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 79, 85
AsuII TTCGAA 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 2 cut(s) 18, 237
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 138
BisI GCNGC 2 cut(s) 7, 226
BlsI GCNGC 2 cut(s) 8, 227
Bme1390I CCNGG 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 266
Bpu14I TTCGAA 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 231
BsaAI YACGTR 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 291
BseXI GCAGC 2 cut(s) 18, 237
BsgI GTGCAG 2 cut(s) 25, 244
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 247
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 110
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 1 cut(s) 194
Bsp119I TTCGAA 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 3 cut(s) 71, 123, 178
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 290
BspFNI CGCG 1 cut(s) 71
BspPI GGATC 1 cut(s) 169
BspT104I TTCGAA 1 cut(s) 25
BssMI GATC 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 43
BstBAI YACGTR 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 257
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstSNI TACGTA 1 cut(s) 267
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 18, 237
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 257
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 2 cut(s) 16, 247
Cac8I GCNNGC 1 cut(s) 230
CseI GACGC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 172, 205
CviJI RGCY 6 cut(s) 32, 54, 84, 194, 228, 299
CviKI_1 RGCY 6 cut(s) 32, 54, 84, 194, 228, 299
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 277
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
EciI GGCGGA 1 cut(s) 167
Eco105I TACGTA 1 cut(s) 267
Eco147I AGGCCT 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 136
FaeI CATG 2 cut(s) 175, 208
FaiI YATR 3 cut(s) 173, 198, 206
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 2 cut(s) 171, 204
Fnu4HI GCNGC 2 cut(s) 7, 226
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 2 cut(s) 7, 226
GluI GCNGC 2 cut(s) 7, 226
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 90
HgaI GACGC 1 cut(s) 107
Hin1II CATG 2 cut(s) 175, 208
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 297
HpaI GTTAAC 1 cut(s) 46
HpaII CCGG 1 cut(s) 90
HphI GGTGA 2 cut(s) 79, 85
Hpy166II GTNNAC 2 cut(s) 46, 270
Hpy188I TCNGA 2 cut(s) 166, 280
Hpy188III TCNNGA 2 cut(s) 248, 303
Hpy8I GTNNAC 2 cut(s) 46, 270
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 5 cut(s) 6, 155, 225, 232, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 277
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 2 cut(s) 175, 208
KspAI GTTAAC 1 cut(s) 46
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 5 cut(s) 96, 103, 123, 150, 176
Lsp1109I GCAGC 2 cut(s) 18, 237
LweI GCATC 1 cut(s) 266
MaeII ACGT 1 cut(s) 266
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 1 cut(s) 59
MnlI CCTC 6 cut(s) 88, 95, 116, 130, 193, 274
MseI TTAA 2 cut(s) 36, 45
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 157
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 1 cut(s) 174
NlaIII CATG 2 cut(s) 175, 208
NspV TTCGAA 1 cut(s) 25
PceI AGGCCT 1 cut(s) 194
PctI GAATGC 1 cut(s) 157
PkrI GCNGC 2 cut(s) 8, 227
Ppu21I YACGTR 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 2 cut(s) 36, 45
SatI GCNGC 2 cut(s) 7, 226
Sau3AI GATC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 247
SetI ASST 5 cut(s) 163, 230, 269, 275, 301
SfaNI GCATC 1 cut(s) 266
SfuI TTCGAA 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
SnaBI TACGTA 1 cut(s) 267
Sse9I AATT 1 cut(s) 59
SseBI AGGCCT 1 cut(s) 194
SsiI CCGC 3 cut(s) 71, 123, 178
StuI AGGCCT 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 25
TasI AATT 1 cut(s) 59
Tru1I TTAA 2 cut(s) 36, 45
Tru9I TTAA 2 cut(s) 36, 45
TscAI CASTG 2 cut(s) 16, 247
TseI GCWGC 2 cut(s) 6, 225
TspRI CASTG 2 cut(s) 16, 247
XapI RAATTY 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.