Rh3CG063100

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0015987
Physical Location & Seq
Reverse (-)
4301841 .. 4303923
2083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG063100.1

Sequence Viewer

Length: 738 bp
ATGGAACGTTTATCAATGTGCGGTAGTGTTGTTCCATTTCGAAAAGCCGTTAAAACAGTTAACCACCGCCACAACTTCAACTTCACGGTGAAGAATAGCCGCACCGGAGAGGACGCTCCCCTCTCCGGTTCTTCCTCCGCTTACTCTATTCTTGGCGTCCACCCAACTTGCTCGGCCGCCGAGCTCAAAGCCGCTTTCCGAGCCAAAGTGAAGCAGTTTCATCCTGATGTTAATAGGAATGCAAAAGGTTCTGATACCATGATCCGCCGTGTCATTCAGGCCTATGAGATGCTATCCAATTGCAGCCGATCGGAGATCATCGAAGGGGAATGTTTAGATCCTTTTGATAATCCAGAATGTGAAGCGTTTGATGTTTTTGTTAATGAGGCTCTTTGTGCTGGAAAAGGTTGTCCATACTCATGTGTACAAAGAGCTCCTCATGCCTTCACTTATGCTTCAACCGGGACTGCAAGAGCGACTTCTCAAGGACATGGAGAAGATTACCAAGTGCAGCTTGCAGTTGGTCAGTGCCCAAGAAGTTGCATTCATTATGTTACACCTTCTCAGAGGATTGTTTTGGAGGAGCTTCTTGACAGCATCTTGAACAAACCTTATGATAGTTCAGCCGAGGCAGATCTGCTTTACTCTCTTATAGTTAAAGCCAGCTTTGAGAACAATCGATATCAAAAGCCAAAGAAGCAACCCAAAGCTTCAACACAACATGTAGATTGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Fer4_15

Protein Analysis

245

Amino Acids

27.19

Weight (kDa)

8.01

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 47 - 102 3.5e-13 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015987)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05345
fragaria_vesca FvH4_7g03590 FvH4_7g03590
malus_domestica MD12G1219200.v1.1
prunus_persica Prupe.6G325800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454761
rosa_laevigata RLG00000025417
rosa_multiflora Rmu_sc0001792.1_g000019
rosa_roxburghii Rroxscaffold_6G00424770
rosa_rugosa Rorug03G0002300
rosa_samantha Rh3AG062300 Rh3BG064200 Rh3CG063100 Rh3DG063900
rosa_wichuraiana Rw3G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 21, 67, 100, 138, 177, 192, 265
AclI AACGTT 1 cut(s) 7
AclWI GGATC 2 cut(s) 256, 332
AcoI YGGCCR 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 4 cut(s) 79, 459, 604, 714
AluBI AGCT 6 cut(s) 184, 434, 514, 586, 666, 710
AluI AGCT 6 cut(s) 184, 434, 514, 586, 666, 710
Alw21I GWGCWC 2 cut(s) 186, 436
AlwI GGATC 2 cut(s) 256, 332
AoxI GGCC 2 cut(s) 174, 279
ApeKI GCWGC 2 cut(s) 303, 511
AsuC2I CCSGG 1 cut(s) 463
AsuHPI GGTGA 1 cut(s) 100
AsuII TTCGAA 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 533
BanII GRGCYC 2 cut(s) 186, 436
Bbv12I GWGCWC 2 cut(s) 186, 436
BbvI GCAGC 2 cut(s) 315, 523
BceAI ACGGC 2 cut(s) 32, 252
BcnI CCSGG 1 cut(s) 463
BglII AGATCT 1 cut(s) 634
BisI GCNGC 5 cut(s) 100, 177, 192, 304, 512
BlsI GCNGC 5 cut(s) 101, 178, 193, 305, 513
Bme1390I CCNGG 1 cut(s) 463
BmrFI CCNGG 1 cut(s) 463
BmsI GCATC 2 cut(s) 279, 606
Bpu14I TTCGAA 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 468
BpuMI CCSGG 1 cut(s) 463
Bsa29I ATCGAT 1 cut(s) 679
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 627
BsaWI WCCGGW 2 cut(s) 104, 125
Bsc4I CCNNNNNNNGG 1 cut(s) 125
BseCI ATCGAT 1 cut(s) 679
BseDI CCNNGG 1 cut(s) 627
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 578
BseRI GAGGAG 2 cut(s) 426, 596
BseSI GKGCMC 1 cut(s) 533
BseX3I CGGCCG 1 cut(s) 174
BseXI GCAGC 2 cut(s) 315, 523
BsgI GTGCAG 1 cut(s) 530
Bsh1285I CGRYCG 2 cut(s) 177, 311
BshFI GGCC 2 cut(s) 176, 281
BshVI ATCGAT 1 cut(s) 679
BsiEI CGRYCG 2 cut(s) 177, 311
BsiHKAI GWGCWC 2 cut(s) 186, 436
BsiSI CCGG 3 cut(s) 105, 126, 462
BslFI GGGAC 1 cut(s) 478
BslI CCNNNNNNNGG 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 478
BsmI GAATGC 2 cut(s) 244, 543
BsnI GGCC 2 cut(s) 176, 281
Bsp119I TTCGAA 1 cut(s) 40
Bsp1286I GDGCHC 3 cut(s) 186, 436, 533
Bsp1407I TGTACA 1 cut(s) 424
Bsp143I GATC 5 cut(s) 261, 308, 315, 337, 634
BspACI CCGC 7 cut(s) 21, 67, 100, 138, 177, 192, 265
BspANI GGCC 2 cut(s) 176, 281
BspCNI CTCAG 1 cut(s) 577
BspDI ATCGAT 1 cut(s) 679
BspPI GGATC 2 cut(s) 256, 332
BspT104I TTCGAA 1 cut(s) 40
BsrGI TGTACA 1 cut(s) 424
BssECI CCNNGG 1 cut(s) 627
BssMI GATC 5 cut(s) 261, 308, 315, 337, 634
BssNI GRCGYC 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 58, 88
BstACI GRCGYC 1 cut(s) 156
BstAUI TGTACA 1 cut(s) 424
BstBI TTCGAA 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 516, 664
BstDEI CTNAG 1 cut(s) 564
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 5 cut(s) 264, 311, 318, 340, 637
BstMBI GATC 5 cut(s) 261, 308, 315, 337, 634
BstMCI CGRYCG 2 cut(s) 177, 311
BstMWI GCNNNNNNNGC 4 cut(s) 200, 395, 440, 697
BstNSI RCATGY 1 cut(s) 725
BstSCI CCNGG 1 cut(s) 461
BstSLI GKGCMC 1 cut(s) 533
BstV1I GCAGC 2 cut(s) 315, 523
BstX2I RGATCY 2 cut(s) 337, 634
BstYI RGATCY 2 cut(s) 337, 634
BstZI CGGCCG 1 cut(s) 174
Bsu15I ATCGAT 1 cut(s) 679
BsuRI GGCC 2 cut(s) 176, 281
BsuTUI ATCGAT 1 cut(s) 679
BtsCI GGATG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 533
Cac8I GCNNGC 2 cut(s) 516, 664
ClaI ATCGAT 1 cut(s) 679
CseI GACGC 2 cut(s) 122, 145
Csp6I GTAC 1 cut(s) 425
CspCI CAANNNNNGTGG 2 cut(s) 149, 184
CviAII CATG 5 cut(s) 259, 420, 440, 491, 722
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 1 cut(s) 564
DpnI GATC 5 cut(s) 263, 310, 317, 339, 636
DpnII GATC 5 cut(s) 261, 308, 315, 337, 634
EaeI YGGCCR 1 cut(s) 174
EagI CGGCCG 1 cut(s) 174
EciI GGCGGA 1 cut(s) 254
Ecl136II GAGCTC 2 cut(s) 184, 434
EclXI CGGCCG 1 cut(s) 174
Eco147I AGGCCT 1 cut(s) 281
Eco24I GRGCYC 2 cut(s) 186, 436
Eco32I GATATC 1 cut(s) 683
Eco52I CGGCCG 1 cut(s) 174
Eco53kI GAGCTC 2 cut(s) 184, 434
EcoICRI GAGCTC 2 cut(s) 184, 434
EcoRV GATATC 1 cut(s) 683
EcoT38I GRGCYC 2 cut(s) 186, 436
FaeI CATG 5 cut(s) 262, 423, 443, 494, 725
FalI AAGNNNNNCTT 4 cut(s) 463, 495, 498, 530
FaqI GGGAC 1 cut(s) 478
FatI CATG 5 cut(s) 258, 419, 439, 490, 721
Fnu4HI GCNGC 5 cut(s) 100, 177, 192, 304, 512
FokI GGATG 1 cut(s) 207
FriOI GRGCYC 2 cut(s) 186, 436
Fsp4HI GCNGC 5 cut(s) 100, 177, 192, 304, 512
GluI GCNGC 5 cut(s) 100, 177, 192, 304, 512
HaeIII GGCC 2 cut(s) 176, 281
HapII CCGG 3 cut(s) 105, 126, 462
HgaI GACGC 2 cut(s) 122, 145
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 5 cut(s) 262, 423, 443, 494, 725
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 708
HpaI GTTAAC 1 cut(s) 61
HpaII CCGG 3 cut(s) 105, 126, 462
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 3 cut(s) 61, 160, 425
Hpy188I TCNGA 4 cut(s) 200, 253, 313, 567
Hpy188III TCNNGA 4 cut(s) 224, 353, 590, 601
Hpy8I GTNNAC 3 cut(s) 61, 160, 425
HpyAV CCTTC 3 cut(s) 317, 454, 570
HpyCH4III ACNGT 2 cut(s) 58, 88
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 6 cut(s) 242, 303, 470, 511, 518, 543
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 395, 440, 697
HpyF3I CTNAG 1 cut(s) 564
HpySE526I ACGT 1 cut(s) 7
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 5 cut(s) 262, 423, 443, 494, 725
KspAI GTTAAC 1 cut(s) 61
Kzo9I GATC 5 cut(s) 261, 308, 315, 337, 634
LmnI GCTCC 3 cut(s) 121, 439, 583
LpnPI CCDG 8 cut(s) 118, 139, 237, 263, 366, 384, 475, 676
Lsp1109I GCAGC 2 cut(s) 315, 523
LweI GCATC 2 cut(s) 279, 606
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 1 cut(s) 553
MalI GATC 5 cut(s) 263, 310, 317, 339, 636
MboI GATC 5 cut(s) 261, 308, 315, 337, 634
MboII GAAGA 3 cut(s) 103, 123, 509
MfeI CAATTG 1 cut(s) 298
MflI RGATCY 2 cut(s) 337, 634
MhlI GDGCHC 3 cut(s) 186, 436, 533
MluCI AATT 1 cut(s) 298
MnlI CCTC 8 cut(s) 103, 131, 145, 379, 447, 561, 574, 622
MseI TTAA 5 cut(s) 51, 60, 231, 381, 657
MslI CAYNNNNRTG 2 cut(s) 225, 418
MspI CCGG 3 cut(s) 105, 126, 462
MspR9I CCNGG 1 cut(s) 463
MunI CAATTG 1 cut(s) 298
Mva1269I GAATGC 2 cut(s) 244, 543
MwoI GCNNNNNNNGC 4 cut(s) 200, 395, 440, 697
NciI CCSGG 1 cut(s) 463
NdeII GATC 5 cut(s) 261, 308, 315, 337, 634
NlaIII CATG 5 cut(s) 262, 423, 443, 494, 725
NmeAIII GCCGAG 3 cut(s) 152, 205, 652
NspI RCATGY 1 cut(s) 725
NspV TTCGAA 1 cut(s) 40
PceI AGGCCT 1 cut(s) 281
PciI ACATGT 1 cut(s) 721
PctI GAATGC 2 cut(s) 244, 543
PkrI GCNGC 5 cut(s) 101, 178, 193, 305, 513
Ple19I CGATCG 1 cut(s) 311
PscI ACATGT 1 cut(s) 721
Psp124BI GAGCTC 2 cut(s) 186, 436
Psp1406I AACGTT 1 cut(s) 7
PsuI RGATCY 2 cut(s) 337, 634
PvuI CGATCG 1 cut(s) 311
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
RseI CAYNNNNRTG 2 cut(s) 225, 418
SacI GAGCTC 2 cut(s) 186, 436
SaqAI TTAA 5 cut(s) 51, 60, 231, 381, 657
SatI GCNGC 5 cut(s) 100, 177, 192, 304, 512
Sau3AI GATC 5 cut(s) 261, 308, 315, 337, 634
ScrFI CCNGG 1 cut(s) 463
SduI GDGCHC 3 cut(s) 186, 436, 533
SfaNI GCATC 2 cut(s) 279, 606
SfuI TTCGAA 1 cut(s) 40
SmiMI CAYNNNNRTG 2 cut(s) 225, 418
SmlI CTYRAG 1 cut(s) 483
SmoI CTYRAG 1 cut(s) 483
Sse9I AATT 1 cut(s) 298
SseBI AGGCCT 1 cut(s) 281
SsiI CCGC 7 cut(s) 21, 67, 100, 138, 177, 192, 265
SstI GAGCTC 2 cut(s) 186, 436
StuI AGGCCT 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 461
TaaI ACNGT 2 cut(s) 58, 88
TaiI ACGT 1 cut(s) 10
TaqI TCGA 3 cut(s) 40, 321, 679
TasI AATT 1 cut(s) 298
TatI WGTACW 1 cut(s) 424
TauI GCSGC 3 cut(s) 102, 179, 194
Tru1I TTAA 5 cut(s) 51, 60, 231, 381, 657
Tru9I TTAA 5 cut(s) 51, 60, 231, 381, 657
TscAI CASTG 1 cut(s) 533
TseI GCWGC 2 cut(s) 303, 511
TspDTI ATGAA 2 cut(s) 209, 536
TspRI CASTG 1 cut(s) 533
XceI RCATGY 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.