MD12G1219200.v1.1

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0015987
Physical Location & Seq
Forward (+)
29651825 .. 29653660
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1219200.v1.1.491

Sequence Viewer

Length: 738 bp
ATGGAAGGTTTATCAGTGTGCGGTTGGAAGATACCGCCGGTTCTACCATTTCAAAAAGCCGTTAAAACTCGTAACCGCCAGAAATTCACAGTGAAGAACTGCAGAGAGGATGCTCCTCCTCTCTCCGCCACTTCCACCGCTTGCACTATCCTCGGTGTCCAGCCTTCCTGCTCCGCCGCCGAGCTCAAAGCCGCCTTCCGCGCCAAAGTGAAGCAGTTTCATCCAGATGTAAATAGGGACGGGAAAGATGCTGATATGATGATTCGCCGTGTAATTCAGGCCTATGAGATGTTATCGAGTTACAGCCGATCGGAGATAATCGAAAGGGAATGTGTAGATCCCTTTGATAATCCAGAATGTGAAGCGTTTGATGTTTTTGTTAACGAGGTTCTTTGTGTGGGAAAAGGTTGTCCATATTCTTGTGTACAAAGAGCCCCTCATGCCTTCACTTATGCTGCAACTGGGACTGCAAGAGCTACATCTCATGGATTTGGGGATGATTACCAAGTTCAGCTTGCAGTTGGTCAGTGCCCGAGAAGTTGCATTCATTATGTTACTCCATCACAGAGAATTATTTTGGAGGAGTTACTTGACAGTATCATCAACACACCGTATGATAGTTCGCCAGAGGCAGATTTGCTCTACTCGCTTACAGTCAAAGCCATGTTTGAGAACAACCGGTATCAGAAACCGAAGAAGCAGCCAAAAGCTTCGACACAGCATGTTGATTGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Fer4_15

Protein Analysis

246

Amino Acids

27.44

Weight (kDa)

7.49

Isoelectric Point (pI)

50.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 50 - 102 2.3e-11 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015987)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05345
fragaria_vesca FvH4_7g03590 FvH4_7g03590
malus_domestica MD12G1219200.v1.1
prunus_persica Prupe.6G325800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454761
rosa_laevigata RLG00000025417
rosa_multiflora Rmu_sc0001792.1_g000019
rosa_roxburghii Rroxscaffold_6G00424770
rosa_rugosa Rorug03G0002300
rosa_samantha Rh3AG062300 Rh3BG064200 Rh3CG063100 Rh3DG063900
rosa_wichuraiana Rw3G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 201
AciI CCGC 9 cut(s) 21, 35, 76, 126, 138, 174, 177, 192, 199
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 1 cut(s) 426
AgeI ACCGGT 1 cut(s) 678
AgsI TTSAA 1 cut(s) 53
AluBI AGCT 4 cut(s) 184, 476, 514, 710
AluI AGCT 4 cut(s) 184, 476, 514, 710
Alw21I GWGCWC 1 cut(s) 186
AlwI GGATC 1 cut(s) 332
Ama87I CYCGRG 1 cut(s) 532
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 2 cut(s) 455, 700
ApoI RAATTY 1 cut(s) 83
AsiGI ACCGGT 1 cut(s) 678
AspLEI GCGC 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 532
BaeGI GKGCMC 1 cut(s) 533
BanII GRGCYC 2 cut(s) 186, 436
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 442, 712
BccI CCATC 1 cut(s) 568
BceAI ACGGC 2 cut(s) 44, 252
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BfmI CTRYAG 1 cut(s) 100
BisI GCNGC 4 cut(s) 177, 192, 456, 701
BlsI GCNGC 4 cut(s) 178, 193, 457, 702
BmeT110I CYCGRG 1 cut(s) 532
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 2 cut(s) 100, 238
BmuI ACTGGG 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 678
Bse118I RCCGGY 2 cut(s) 37, 678
Bse1I ACTGG 1 cut(s) 466
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 3 cut(s) 115, 220, 502
BseNI ACTGG 1 cut(s) 466
BseRI GAGGAG 3 cut(s) 105, 108, 596
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 2 cut(s) 442, 712
Bsh1236I CGCG 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 311
BshFI GGCC 1 cut(s) 281
BshTI ACCGGT 1 cut(s) 678
BsiEI CGRYCG 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 532
BsiSI CCGG 2 cut(s) 38, 679
BslFI GGGAC 2 cut(s) 251, 478
BsmFI GGGAC 2 cut(s) 251, 478
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 532
Bsp1286I GDGCHC 3 cut(s) 186, 436, 533
Bsp1407I TGTACA 1 cut(s) 424
Bsp143I GATC 2 cut(s) 308, 337
BspACI CCGC 9 cut(s) 21, 35, 76, 126, 138, 174, 177, 192, 199
BspANI GGCC 1 cut(s) 281
BspFNI CGCG 1 cut(s) 201
BspMAI CTGCAG 1 cut(s) 104
BspPI GGATC 1 cut(s) 332
BsrFI RCCGGY 2 cut(s) 37, 678
BsrGI TGTACA 1 cut(s) 424
BsrI ACTGG 1 cut(s) 466
BssAI RCCGGY 2 cut(s) 37, 678
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 2 cut(s) 308, 337
Bst4CI ACNGT 4 cut(s) 91, 596, 612, 655
BstAUI TGTACA 1 cut(s) 424
BstC8I GCNNGC 2 cut(s) 142, 516
BstF5I GGATG 3 cut(s) 115, 220, 502
BstFNI CGCG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 2 cut(s) 311, 340
BstMBI GATC 2 cut(s) 308, 337
BstMCI CGRYCG 1 cut(s) 311
BstMWI GCNNNNNNNGC 3 cut(s) 200, 440, 646
BstNSI RCATGY 1 cut(s) 725
BstSFI CTRYAG 1 cut(s) 100
BstSLI GKGCMC 1 cut(s) 533
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 442, 712
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 3 cut(s) 115, 220, 502
BtsIMutI CAGTG 3 cut(s) 21, 96, 533
Cac8I GCNNGC 2 cut(s) 142, 516
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 2 cut(s) 37, 678
Csp6I GTAC 1 cut(s) 425
CspAI ACCGGT 1 cut(s) 678
CviAII CATG 4 cut(s) 440, 485, 664, 722
CviQI GTAC 1 cut(s) 425
DpnI GATC 2 cut(s) 310, 339
DpnII GATC 2 cut(s) 308, 337
EciI GGCGGA 2 cut(s) 115, 163
Ecl136II GAGCTC 1 cut(s) 184
Eco147I AGGCCT 1 cut(s) 281
Eco24I GRGCYC 2 cut(s) 186, 436
Eco53kI GAGCTC 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 532
EcoICRI GAGCTC 1 cut(s) 184
EcoT38I GRGCYC 2 cut(s) 186, 436
FaeI CATG 4 cut(s) 443, 488, 667, 725
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FaqI GGGAC 2 cut(s) 251, 478
FatI CATG 4 cut(s) 439, 484, 663, 721
Fnu4HI GCNGC 4 cut(s) 177, 192, 456, 701
FokI GGATG 3 cut(s) 122, 207, 509
FriOI GRGCYC 2 cut(s) 186, 436
Fsp4HI GCNGC 4 cut(s) 177, 192, 456, 701
GlaI GCGC 1 cut(s) 202
GluI GCNGC 4 cut(s) 177, 192, 456, 701
HaeIII GGCC 1 cut(s) 281
HapII CCGG 2 cut(s) 38, 679
HhaI GCGC 1 cut(s) 203
Hin1II CATG 4 cut(s) 443, 488, 667, 725
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 708
HinfI GANTC 1 cut(s) 262
HpaI GTTAAC 1 cut(s) 382
HpaII CCGG 2 cut(s) 38, 679
Hpy166II GTNNAC 2 cut(s) 382, 425
Hpy188I TCNGA 2 cut(s) 313, 687
Hpy188III TCNNGA 2 cut(s) 224, 353
Hpy8I GTNNAC 2 cut(s) 382, 425
HpyAV CCTTC 3 cut(s) 174, 205, 454
HpyCH4III ACNGT 4 cut(s) 91, 596, 612, 655
HpyCH4V TGCA 6 cut(s) 102, 144, 458, 470, 518, 543
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 440, 646
Hsp92II CATG 4 cut(s) 443, 488, 667, 725
HspAI GCGC 1 cut(s) 201
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 2 cut(s) 308, 337
LmnI GCTCC 2 cut(s) 118, 176
Lsp1109I GCAGC 2 cut(s) 442, 712
LweI GCATC 2 cut(s) 100, 238
MaeIII GTNAC 4 cut(s) 71, 299, 553, 585
MalI GATC 2 cut(s) 310, 339
MboI GATC 2 cut(s) 308, 337
MboII GAAGA 3 cut(s) 40, 106, 706
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 3 cut(s) 186, 436, 533
MluCI AATT 3 cut(s) 83, 273, 570
MmeI TCCRAC 1 cut(s) 5
MnlI CCTC 8 cut(s) 100, 126, 129, 161, 379, 447, 574, 622
MseI TTAA 2 cut(s) 63, 381
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 2 cut(s) 38, 679
Mva1269I GAATGC 1 cut(s) 543
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 3 cut(s) 200, 440, 646
NdeII GATC 2 cut(s) 308, 337
NlaIII CATG 4 cut(s) 443, 488, 667, 725
NmeAIII GCCGAG 1 cut(s) 205
NspI RCATGY 1 cut(s) 725
PceI AGGCCT 1 cut(s) 281
PctI GAATGC 1 cut(s) 543
PfeI GAWTC 1 cut(s) 262
PinAI ACCGGT 1 cut(s) 678
PkrI GCNGC 4 cut(s) 178, 193, 457, 702
Ple19I CGATCG 1 cut(s) 311
Psp124BI GAGCTC 1 cut(s) 186
PstI CTGCAG 1 cut(s) 104
PsuI RGATCY 1 cut(s) 337
PvuI CGATCG 1 cut(s) 311
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
RseI CAYNNNNRTG 1 cut(s) 225
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 63, 381
SatI GCNGC 4 cut(s) 177, 192, 456, 701
Sau3AI GATC 2 cut(s) 308, 337
SduI GDGCHC 3 cut(s) 186, 436, 533
SetI ASST 7 cut(s) 10, 186, 390, 409, 478, 516, 712
SfaNI GCATC 2 cut(s) 100, 238
SfcI CTRYAG 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 3 cut(s) 83, 273, 570
SseBI AGGCCT 1 cut(s) 281
SsiI CCGC 9 cut(s) 21, 35, 76, 126, 138, 174, 177, 192, 199
SstI GAGCTC 1 cut(s) 186
StuI AGGCCT 1 cut(s) 281
TaaI ACNGT 4 cut(s) 91, 596, 612, 655
TaqI TCGA 3 cut(s) 296, 321, 713
TasI AATT 3 cut(s) 83, 273, 570
TatI WGTACW 1 cut(s) 424
TauI GCSGC 2 cut(s) 179, 194
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 2 cut(s) 63, 381
Tru9I TTAA 2 cut(s) 63, 381
TscAI CASTG 3 cut(s) 21, 96, 533
TseI GCWGC 2 cut(s) 455, 700
TspDTI ATGAA 2 cut(s) 209, 536
TspRI CASTG 3 cut(s) 21, 96, 533
XapI RAATTY 1 cut(s) 83
XceI RCATGY 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.