RLG00000025417

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015987
Physical Location & Seq
Forward (+)
45662738 .. 45664639
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025417

Sequence Viewer

Length: 915 bp
ATGGAACGTTTATCAATGTGCGGTGGAACATCAATGTGCGGTAGTGTTGTTCCATTTCGAAAAGCCGTTAAAACCGTTAACCACCGCCACAACTTCAACTTCACGGTGAAGAATAGCCGCACCGGAGAGGATGCTCCCCTCTCCAGTTCTTCCTCTGCTCACTCTATTCTTGGCGTCCACCCAACTTGCTCGGCCGCCGAGCTCAAAGCCGCTTTCCGAGCCAAAGTGAAGCAGTTTCATCCTGATGTTAACAGGAATGCAAAAGGTTCTGATGTCATGATCCGCCGTGTCATTCAGGCCTATGAGATGCTATCCAATTTCAGCCGATCGGAGATCATCGAAGGGGAATGTTTAGATCCTTTTGATAATCCAGAATGTGAAGCGTTTGATGTTTTTGTTAATGAGGCTGTTTGTGCTGGAAAAGGTTGTCCATACTCATGTGTACAAAGAGCTCCTTATGCCTTCACTTATGCTTCAACCGGGACTGCAAGAGTGACTTCTCAAGGACATGGAGAAGATTACCAAGTGCAGCTTGCAGTTGGTCAGTGCCCAAGAAGTTGCATTCATTATGTTACACCTTCTCAGAGGATTGTTTTGGAGGAGCTTCTTGACAGCATCTTGAGCAAACCTTATGATAGTTCAGCCGAGGCAGATCTGCTATACTCTCTTATAGTTAAAGCCAGGTTTGAGAACAATCGATATCAAAAGCCAAAGAAGCAACCCAAAGCTTCAACACAACATGATCTAATCTGTCATGAAGTTTCAGATGGTGAATCTGAATATGGCTCTGCTTTGTCAGCATTTCATACAAATGAAATGTACCAGCATTTCATCGATCCAAAACCTGGTGTGACATACAATCTTTATACTCTAATATCAAGAGGATTCATGAGATCAGATGGAATAGATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Fer4_15

Protein Analysis

305

Amino Acids

33.72

Weight (kDa)

6.59

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 54 - 107 1.6e-11 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015987)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05345
fragaria_vesca FvH4_7g03590 FvH4_7g03590
malus_domestica MD12G1219200.v1.1
prunus_persica Prupe.6G325800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454761
rosa_laevigata RLG00000025417
rosa_multiflora Rmu_sc0001792.1_g000019
rosa_roxburghii Rroxscaffold_6G00424770
rosa_rugosa Rorug03G0002300
rosa_samantha Rh3AG062300 Rh3BG064200 Rh3CG063100 Rh3DG063900
rosa_wichuraiana Rw3G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 845
AciI CCGC 7 cut(s) 21, 39, 85, 118, 195, 210, 283
AclI AACGTT 1 cut(s) 7
AclWI GGATC 3 cut(s) 274, 350, 830
AcoI YGGCCR 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 2 cut(s) 444, 821
AfiI CCNNNNNNNGG 1 cut(s) 845
AgsI TTSAA 3 cut(s) 97, 477, 732
AjnI CCWGG 2 cut(s) 680, 844
AluBI AGCT 5 cut(s) 202, 452, 532, 604, 728
AluI AGCT 5 cut(s) 202, 452, 532, 604, 728
Alw21I GWGCWC 2 cut(s) 204, 454
AlwI GGATC 3 cut(s) 274, 350, 830
AoxI GGCC 2 cut(s) 192, 297
ApeKI GCWGC 1 cut(s) 529
AsuC2I CCSGG 1 cut(s) 481
AsuHPI GGTGA 2 cut(s) 118, 782
AsuII TTCGAA 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 551
BanII GRGCYC 2 cut(s) 204, 454
Bbv12I GWGCWC 2 cut(s) 204, 454
BbvI GCAGC 1 cut(s) 541
BccI CCATC 2 cut(s) 761, 893
BceAI ACGGC 2 cut(s) 50, 270
BciT130I CCWGG 2 cut(s) 682, 846
BcnI CCSGG 1 cut(s) 481
BfaI CTAG 1 cut(s) 913
BglII AGATCT 1 cut(s) 652
BisI GCNGC 4 cut(s) 118, 195, 210, 530
BlsI GCNGC 4 cut(s) 119, 196, 211, 531
Bme1390I CCNGG 3 cut(s) 481, 682, 846
BmrFI CCNGG 3 cut(s) 481, 682, 846
BmsI GCATC 3 cut(s) 121, 297, 624
BpmI CTGGAG 1 cut(s) 127
Bpu14I TTCGAA 1 cut(s) 58
BpuEI CTTGAG 2 cut(s) 486, 640
BpuMI CCSGG 1 cut(s) 481
Bsa29I ATCGAT 2 cut(s) 697, 834
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 645
BsaWI WCCGGW 1 cut(s) 122
Bsc4I CCNNNNNNNGG 1 cut(s) 845
Bse1I ACTGG 1 cut(s) 144
BseBI CCWGG 2 cut(s) 682, 846
BseCI ATCGAT 2 cut(s) 697, 834
BseDI CCNNGG 1 cut(s) 645
BseGI GGATG 2 cut(s) 136, 238
BseLI CCNNNNNNNGG 1 cut(s) 845
BseMII CTCAG 1 cut(s) 596
BseNI ACTGG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 614
BseSI GKGCMC 1 cut(s) 551
BseX3I CGGCCG 1 cut(s) 192
BseXI GCAGC 1 cut(s) 541
BsgI GTGCAG 1 cut(s) 548
Bsh1285I CGRYCG 2 cut(s) 195, 329
BshFI GGCC 2 cut(s) 194, 299
BshVI ATCGAT 2 cut(s) 697, 834
BsiEI CGRYCG 2 cut(s) 195, 329
BsiHKAI GWGCWC 2 cut(s) 204, 454
BsiSI CCGG 2 cut(s) 123, 480
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 1 cut(s) 845
BsmFI GGGAC 1 cut(s) 496
BsmI GAATGC 2 cut(s) 262, 561
BsnI GGCC 2 cut(s) 194, 299
Bsp119I TTCGAA 1 cut(s) 58
Bsp1286I GDGCHC 3 cut(s) 204, 454, 551
Bsp1407I TGTACA 1 cut(s) 442
Bsp143I GATC 8 cut(s) 279, 326, 333, 355, 652, 742, 835, 893
BspACI CCGC 7 cut(s) 21, 39, 85, 118, 195, 210, 283
BspANI GGCC 2 cut(s) 194, 299
BspCNI CTCAG 1 cut(s) 595
BspDI ATCGAT 2 cut(s) 697, 834
BspHI TCATGA 3 cut(s) 276, 754, 888
BspPI GGATC 3 cut(s) 274, 350, 830
BspT104I TTCGAA 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 442
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 645
BssMI GATC 8 cut(s) 279, 326, 333, 355, 652, 742, 835, 893
BssNI GRCGYC 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 682, 846
Bst4CI ACNGT 2 cut(s) 76, 106
BstACI GRCGYC 1 cut(s) 174
BstAUI TGTACA 1 cut(s) 442
BstBI TTCGAA 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 1 cut(s) 582
BstF5I GGATG 2 cut(s) 136, 238
BstKTI GATC 8 cut(s) 282, 329, 336, 358, 655, 745, 838, 896
BstMBI GATC 8 cut(s) 279, 326, 333, 355, 652, 742, 835, 893
BstMCI CGRYCG 2 cut(s) 195, 329
BstMWI GCNNNNNNNGC 6 cut(s) 218, 413, 458, 621, 715, 797
BstNI CCWGG 2 cut(s) 682, 846
BstSCI CCNGG 3 cut(s) 479, 680, 844
BstSLI GKGCMC 1 cut(s) 551
BstV1I GCAGC 1 cut(s) 541
BstX2I RGATCY 2 cut(s) 355, 652
BstYI RGATCY 2 cut(s) 355, 652
BstZI CGGCCG 1 cut(s) 192
Bsu15I ATCGAT 2 cut(s) 697, 834
BsuRI GGCC 2 cut(s) 194, 299
BsuTUI ATCGAT 2 cut(s) 697, 834
BtsCI GGATG 2 cut(s) 136, 238
BtsIMutI CAGTG 1 cut(s) 551
Cac8I GCNNGC 1 cut(s) 534
CciI TCATGA 3 cut(s) 276, 754, 888
ClaI ATCGAT 2 cut(s) 697, 834
CseI GACGC 1 cut(s) 163
CsiI ACCWGGT 1 cut(s) 844
Csp6I GTAC 2 cut(s) 443, 820
CspCI CAANNNNNGTGG 2 cut(s) 167, 202
CviAII CATG 6 cut(s) 277, 438, 509, 740, 755, 889
CviQI GTAC 2 cut(s) 443, 820
DdeI CTNAG 1 cut(s) 582
DpnI GATC 8 cut(s) 281, 328, 335, 357, 654, 744, 837, 895
DpnII GATC 8 cut(s) 279, 326, 333, 355, 652, 742, 835, 893
EaeI YGGCCR 1 cut(s) 192
EagI CGGCCG 1 cut(s) 192
EciI GGCGGA 1 cut(s) 272
Ecl136II GAGCTC 2 cut(s) 202, 452
EclXI CGGCCG 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 299
Eco24I GRGCYC 2 cut(s) 204, 454
Eco32I GATATC 1 cut(s) 701
Eco52I CGGCCG 1 cut(s) 192
Eco53kI GAGCTC 2 cut(s) 202, 452
EcoICRI GAGCTC 2 cut(s) 202, 452
EcoRII CCWGG 2 cut(s) 680, 844
EcoRV GATATC 1 cut(s) 701
EcoT38I GRGCYC 2 cut(s) 204, 454
FaeI CATG 6 cut(s) 280, 441, 512, 743, 758, 892
FalI AAGNNNNNCTT 6 cut(s) 439, 471, 481, 513, 516, 548
FaqI GGGAC 1 cut(s) 496
FatI CATG 6 cut(s) 276, 437, 508, 739, 754, 888
Fnu4HI GCNGC 4 cut(s) 118, 195, 210, 530
FokI GGATG 2 cut(s) 143, 225
FriOI GRGCYC 2 cut(s) 204, 454
Fsp4HI GCNGC 4 cut(s) 118, 195, 210, 530
FspBI CTAG 1 cut(s) 913
GluI GCNGC 4 cut(s) 118, 195, 210, 530
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 2 cut(s) 194, 299
HapII CCGG 2 cut(s) 123, 480
HgaI GACGC 1 cut(s) 163
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 6 cut(s) 280, 441, 512, 743, 758, 892
HincII GTYRAC 2 cut(s) 79, 250
HindII GTYRAC 2 cut(s) 79, 250
HindIII AAGCTT 1 cut(s) 726
HinfI GANTC 2 cut(s) 773, 885
HpaI GTTAAC 2 cut(s) 79, 250
HpaII CCGG 2 cut(s) 123, 480
HphI GGTGA 2 cut(s) 118, 782
Hpy166II GTNNAC 4 cut(s) 79, 178, 250, 443
Hpy188I TCNGA 7 cut(s) 218, 271, 331, 585, 766, 778, 898
Hpy188III TCNNGA 8 cut(s) 242, 277, 371, 608, 619, 755, 879, 889
Hpy8I GTNNAC 4 cut(s) 79, 178, 250, 443
HpyAV CCTTC 3 cut(s) 335, 472, 588
HpyCH4III ACNGT 2 cut(s) 76, 106
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 5 cut(s) 260, 488, 529, 536, 561
HpyF10VI GCNNNNNNNGC 6 cut(s) 218, 413, 458, 621, 715, 797
HpyF3I CTNAG 1 cut(s) 582
HpySE526I ACGT 1 cut(s) 7
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 6 cut(s) 280, 441, 512, 743, 758, 892
KspAI GTTAAC 2 cut(s) 79, 250
Kzo9I GATC 8 cut(s) 279, 326, 333, 355, 652, 742, 835, 893
LmnI GCTCC 3 cut(s) 139, 457, 601
Lsp1109I GCAGC 1 cut(s) 541
LweI GCATC 3 cut(s) 121, 297, 624
MabI ACCWGGT 1 cut(s) 844
MaeI CTAG 1 cut(s) 913
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 3 cut(s) 493, 571, 850
MalI GATC 8 cut(s) 281, 328, 335, 357, 654, 744, 837, 895
MboI GATC 8 cut(s) 279, 326, 333, 355, 652, 742, 835, 893
MboII GAAGA 3 cut(s) 121, 141, 527
MflI RGATCY 2 cut(s) 355, 652
MhlI GDGCHC 3 cut(s) 204, 454, 551
MluCI AATT 1 cut(s) 316
MnlI CCTC 8 cut(s) 121, 149, 163, 397, 579, 592, 640, 875
MseI TTAA 5 cut(s) 69, 78, 249, 399, 675
MslI CAYNNNNRTG 4 cut(s) 34, 243, 436, 810
MspI CCGG 2 cut(s) 123, 480
MspR9I CCNGG 3 cut(s) 481, 682, 846
Mva1269I GAATGC 2 cut(s) 262, 561
MvaI CCWGG 2 cut(s) 682, 846
MwoI GCNNNNNNNGC 6 cut(s) 218, 413, 458, 621, 715, 797
NciI CCSGG 1 cut(s) 481
NdeII GATC 8 cut(s) 279, 326, 333, 355, 652, 742, 835, 893
NlaIII CATG 6 cut(s) 280, 441, 512, 743, 758, 892
NmeAIII GCCGAG 3 cut(s) 170, 223, 670
NmuCI GTSAC 2 cut(s) 493, 850
NspV TTCGAA 1 cut(s) 58
PagI TCATGA 3 cut(s) 276, 754, 888
PceI AGGCCT 1 cut(s) 299
PctI GAATGC 2 cut(s) 262, 561
PfeI GAWTC 2 cut(s) 773, 885
PflMI CCANNNNNTGG 1 cut(s) 845
PkrI GCNGC 4 cut(s) 119, 196, 211, 531
Ple19I CGATCG 1 cut(s) 329
Psp124BI GAGCTC 2 cut(s) 204, 454
Psp1406I AACGTT 1 cut(s) 7
Psp6I CCWGG 2 cut(s) 680, 844
PspGI CCWGG 2 cut(s) 680, 844
PsuI RGATCY 2 cut(s) 355, 652
PvuI CGATCG 1 cut(s) 329
RsaI GTAC 2 cut(s) 444, 821
RsaNI GTAC 2 cut(s) 443, 820
RseI CAYNNNNRTG 4 cut(s) 34, 243, 436, 810
SacI GAGCTC 2 cut(s) 204, 454
SaqAI TTAA 5 cut(s) 69, 78, 249, 399, 675
SatI GCNGC 4 cut(s) 118, 195, 210, 530
Sau3AI GATC 8 cut(s) 279, 326, 333, 355, 652, 742, 835, 893
ScrFI CCNGG 3 cut(s) 481, 682, 846
SduI GDGCHC 3 cut(s) 204, 454, 551
SexAI ACCWGGT 1 cut(s) 844
SfaNI GCATC 3 cut(s) 121, 297, 624
SfuI TTCGAA 1 cut(s) 58
SmiMI CAYNNNNRTG 4 cut(s) 34, 243, 436, 810
SmlI CTYRAG 2 cut(s) 501, 619
SmoI CTYRAG 2 cut(s) 501, 619
Sse9I AATT 1 cut(s) 316
SseBI AGGCCT 1 cut(s) 299
SsiI CCGC 7 cut(s) 21, 39, 85, 118, 195, 210, 283
SspMI CTAG 1 cut(s) 913
SstI GAGCTC 2 cut(s) 204, 454
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 3 cut(s) 479, 680, 844
TaaI ACNGT 2 cut(s) 76, 106
TaiI ACGT 1 cut(s) 10
TaqI TCGA 4 cut(s) 58, 339, 697, 834
TasI AATT 1 cut(s) 316
TatI WGTACW 1 cut(s) 442
TauI GCSGC 3 cut(s) 120, 197, 212
TfiI GAWTC 2 cut(s) 773, 885
Tru1I TTAA 5 cut(s) 69, 78, 249, 399, 675
Tru9I TTAA 5 cut(s) 69, 78, 249, 399, 675
TscAI CASTG 1 cut(s) 551
TseFI GTSAC 2 cut(s) 493, 850
TseI GCWGC 1 cut(s) 529
Tsp45I GTSAC 2 cut(s) 493, 850
TspDTI ATGAA 7 cut(s) 227, 554, 771, 794, 820, 828, 877
TspRI CASTG 1 cut(s) 551
Van91I CCANNNNNTGG 1 cut(s) 845
XspI CTAG 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.