AT3G05540

Translationally-controlled tumor protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011211
Physical Location & Seq
Reverse (-)
1606487 .. 1608030
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05540.1

Sequence Viewer

Length: 507 bp
ATGTTGGTCTACCAGGATATTCTTACAGGCGATGAGCTTCTCTCTGATTCCTTTCCTTACAAGGAAATCGAGAATGGCATGTTATGGGAAGTTGAAGGAAAGTGGGTTGTGAAAGGAGCTATGGATTTTGACATAGGTGCGAATCCGGGTGAGGAAGGGGGTGAAGACGAAGGAGTCGATGATCAAGCTGTGAAGGTTGTCGATATCATCGATACGTTTAGGCTTCAGGAGCAACCATCGTTTGACAAGAAACAATTTGTGATGTTTATGAAAAGATACATCAAGCAACTAAGCCCTAAGTTGGACTCAGAAAACCAAGAGCTGTTCAAGAAACACATTGAGAGTGCCACCAAATTCTTGATGTCAAAGCTCAAAGACTTCCAATTCTTCGTGGGAGAGAGCATGGAAGGAGAAGAAGGGAGCTTAGTGTTTGCTTACTACAGAGAAGGAGCCACTGATCCTACTTTTCTCTACTTGGCCTACGGCTTGAAAGAGATCAAGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0032502 GO:0042127 GO:0050789 GO:0050794 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCTP

Protein Analysis

168

Amino Acids

19.32

Weight (kDa)

4.48

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCTP PF00838 1 - 164 2.5e-55 Translationally controlled tumour protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05540 AT3G16640
fragaria_vesca FvH4_4g18300
malus_domestica MD13G1167500.v1.1 MD13G1167600.v1.1
prunus_persica Prupe.1G134900_v2.0.a1 Prupe.1G134900_v2.0.a1
pyrus_communis pycom13g14320
rosa_chinensis RchiOBHm_Chr4g0422701
rosa_laevigata RLG00000007606
rosa_multiflora Rmu_sc0000830.1_g000051
rosa_roxburghii Rroxscaffold_5G00364620
rosa_rugosa Rorug04G0181000
rosa_samantha Rh4AG240900 Rh4BG244100 Rh4CG254900 Rh4DG239200 Rh5CG492100
rosa_wichuraiana Rw4G020790 Rw4G020800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
AccI GTMKAC 1 cut(s) 9
AclWI GGATC 1 cut(s) 452
AcsI RAATTY 1 cut(s) 353
AcuI CTGAAG 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 3 cut(s) 95, 328, 490
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 6 cut(s) 37, 119, 188, 322, 370, 423
AluI AGCT 6 cut(s) 37, 119, 188, 322, 370, 423
AlwI GGATC 1 cut(s) 452
AoxI GGCC 1 cut(s) 477
ApoI RAATTY 1 cut(s) 353
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 161, 173
BbsI GAAGAC 1 cut(s) 171
BccI CCATC 1 cut(s) 244
BceAI ACGGC 1 cut(s) 499
BciT130I CCWGG 1 cut(s) 14
BclI TGATCA 1 cut(s) 181
BcnI CCSGG 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 439
Bme1390I CCNGG 2 cut(s) 14, 147
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 2 cut(s) 14, 147
BpiI GAAGAC 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpuMI CCSGG 1 cut(s) 147
Bsa29I ATCGAT 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 14
BseCI ATCGAT 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 321
BshFI GGCC 1 cut(s) 479
BshVI ATCGAT 1 cut(s) 210
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 301
BsnI GGCC 1 cut(s) 479
Bsp143I GATC 3 cut(s) 181, 457, 495
BspANI GGCC 1 cut(s) 479
BspCNI CTCAG 1 cut(s) 320
BspDI ATCGAT 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 451
BspPI GGATC 1 cut(s) 452
BssMI GATC 3 cut(s) 181, 457, 495
Bst2UI CCWGG 1 cut(s) 14
BstDEI CTNAG 4 cut(s) 290, 297, 307, 424
BstKTI GATC 3 cut(s) 184, 460, 498
BstMBI GATC 3 cut(s) 181, 457, 495
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 12, 145
BstSFI CTRYAG 1 cut(s) 439
BstV2I GAAGAC 1 cut(s) 171
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 1 cut(s) 479
BsuTUI ATCGAT 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 453
ClaI ATCGAT 1 cut(s) 210
CviAII CATG 2 cut(s) 79, 403
DdeI CTNAG 4 cut(s) 290, 297, 307, 424
DpnI GATC 3 cut(s) 183, 459, 497
DpnII GATC 3 cut(s) 181, 457, 495
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
Eco32I GATATC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 12
EcoRV GATATC 1 cut(s) 205
FaeI CATG 2 cut(s) 82, 406
FaiI YATR 6 cut(s) 80, 85, 122, 134, 269, 404
FatI CATG 2 cut(s) 78, 402
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 479
HapII CCGG 1 cut(s) 146
Hin1II CATG 2 cut(s) 82, 406
HinfI GANTC 4 cut(s) 47, 142, 174, 305
HpaII CCGG 1 cut(s) 146
HphI GGTGA 2 cut(s) 161, 173
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 46, 310
Hpy188III TCNNGA 4 cut(s) 70, 227, 328, 358
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 7 cut(s) 89, 149, 164, 187, 401, 410, 440
HpyCH4IV ACGT 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 4 cut(s) 290, 297, 307, 424
HpySE526I ACGT 1 cut(s) 215
Hsp92II CATG 2 cut(s) 82, 406
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 3 cut(s) 181, 457, 495
LmnI GCTCC 4 cut(s) 116, 229, 420, 449
LpnPI CCDG 4 cut(s) 12, 26, 159, 212
MaeII ACGT 1 cut(s) 215
MalI GATC 3 cut(s) 183, 459, 497
MboI GATC 3 cut(s) 181, 457, 495
MboII GAAGA 3 cut(s) 176, 379, 425
MluCI AATT 3 cut(s) 254, 353, 383
MlyI GAGTC 2 cut(s) 183, 299
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 1 cut(s) 145
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 2 cut(s) 14, 147
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 229
NciI CCSGG 1 cut(s) 147
NdeII GATC 3 cut(s) 181, 457, 495
NlaIII CATG 2 cut(s) 82, 406
NlaIV GGNNCC 1 cut(s) 451
NspI RCATGY 1 cut(s) 82
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 207
PfeI GAWTC 2 cut(s) 47, 142
PleI GAGTC 2 cut(s) 182, 299
PpsI GAGTC 2 cut(s) 182, 299
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 451
Sau3AI GATC 3 cut(s) 181, 457, 495
SchI GAGTC 2 cut(s) 183, 299
ScrFI CCNGG 2 cut(s) 14, 147
SetI ASST 9 cut(s) 39, 121, 139, 190, 198, 218, 324, 372, 425
SfcI CTRYAG 1 cut(s) 439
Sse9I AATT 3 cut(s) 254, 353, 383
StyD4I CCNGG 2 cut(s) 12, 145
TaiI ACGT 1 cut(s) 218
TaqI TCGA 4 cut(s) 69, 177, 201, 210
TasI AATT 3 cut(s) 254, 353, 383
TfiI GAWTC 2 cut(s) 47, 142
TscAI CASTG 1 cut(s) 460
TspDTI ATGAA 1 cut(s) 284
TspRI CASTG 1 cut(s) 460
XapI RAATTY 1 cut(s) 353
XceI RCATGY 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.