Rorug04G0181000

Belongs to the TCTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011211
Physical Location & Seq
Forward (+)
31691553 .. 31692307
755 bp
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UTR
Exon/CDS
Intron
Rorug04G0181000.1

Sequence Viewer

Length: 471 bp
ATGAATCTGAGTTCACCTCTGTCATCCCACCAGCTAGGCTGTTCAAGGCCTTTGTCCTTGACGCCGATAACCTCATCCCCAAGATTGCTCCCCAAGCAGTTAAGAGTGCCGAGATTCTTGAAGGTGATGGAGGAGTTGGCACCATCAAGAAGATCAACCTTGGTGAAGGAAGTGAATACGTACAGCTATGTGAAGCATCAAATTGACGGAATTGACAAAGACAACTTTGTCTACAAATACAGCATGATTGAGGGAGACGCTATATCTGACAAAATCGAGAAGATCTCCTATGAGACTAAGTTGGTAGCATCTTCCGATGGAGGCTCCGTCATCAAGAGCACCAGTAACTACCACACAAAGGGTGACGTGGAGATCAAGGAAGAGCATGTCAAGGCTGGAAAAGAAAGAGCCGCTGGTCTATTCAAGATCATCGAGAGCCACCTTCTAGCCAACCCTGAGGCCTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCTP

Protein Analysis

156

Amino Acids

17.41

Weight (kDa)

8.89

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 62 - 151 1.1e-11 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05540 AT3G16640
fragaria_vesca FvH4_4g18300
malus_domestica MD13G1167500.v1.1 MD13G1167600.v1.1
prunus_persica Prupe.1G134900_v2.0.a1 Prupe.1G134900_v2.0.a1
pyrus_communis pycom13g14320
rosa_chinensis RchiOBHm_Chr4g0422701
rosa_laevigata RLG00000007606
rosa_multiflora Rmu_sc0000830.1_g000051
rosa_roxburghii Rroxscaffold_5G00364620
rosa_rugosa Rorug04G0181000
rosa_samantha Rh4AG240900 Rh4BG244100 Rh4CG254900 Rh4DG239200 Rh5CG492100
rosa_wichuraiana Rw4G020790 Rw4G020800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 139
AccI GTMKAC 1 cut(s) 231
AciI CCGC 1 cut(s) 411
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 358
AgsI TTSAA 3 cut(s) 45, 121, 424
AjiI CACGTC 1 cut(s) 367
AluBI AGCT 2 cut(s) 34, 186
AluI AGCT 2 cut(s) 34, 186
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 2 cut(s) 249, 287
AoxI GGCC 2 cut(s) 47, 459
AsuHPI GGTGA 4 cut(s) 6, 136, 175, 374
AxyI CCTNAGG 1 cut(s) 456
BanI GGYRCC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 341
BccI CCATC 3 cut(s) 121, 151, 311
BcoDI GTCTC 2 cut(s) 249, 287
BfaI CTAG 2 cut(s) 35, 446
BglII AGATCT 1 cut(s) 282
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
BmgBI CACGTC 1 cut(s) 367
BmiI GGNNCC 2 cut(s) 141, 325
BmsI GCATC 2 cut(s) 205, 317
BplI GAGNNNNNCTC 3 cut(s) 33, 269, 301
BsaAI YACGTR 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse1I ACTGG 1 cut(s) 342
Bse21I CCTNAGG 1 cut(s) 456
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 2 cut(s) 23, 74
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 146
BshFI GGCC 2 cut(s) 49, 461
BshNI GGYRCC 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 358
BsmAI GTCTC 2 cut(s) 249, 287
BsmBI CGTCTC 1 cut(s) 249
BsnI GGCC 2 cut(s) 49, 461
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 4 cut(s) 152, 282, 372, 426
BspACI CCGC 1 cut(s) 411
BspANI GGCC 2 cut(s) 49, 461
BspCNI CTCAG 1 cut(s) 448
BspLI GGNNCC 2 cut(s) 141, 325
BspQI GCTCTTC 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 139
BsrI ACTGG 1 cut(s) 342
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 4 cut(s) 152, 282, 372, 426
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 159
Bst6I CTCTTC 1 cut(s) 375
BstACI GRCGYC 1 cut(s) 62
BstBAI YACGTR 1 cut(s) 180
BstDEI CTNAG 3 cut(s) 8, 297, 456
BstF5I GGATG 2 cut(s) 23, 74
BstKTI GATC 4 cut(s) 155, 285, 375, 429
BstMAI GTCTC 2 cut(s) 249, 287
BstMBI GATC 4 cut(s) 152, 282, 372, 426
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNSI RCATGY 1 cut(s) 389
BstSNI TACGTA 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
Bsu36I CCTNAGG 1 cut(s) 456
BsuRI GGCC 2 cut(s) 49, 461
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 23, 74
CseI GACGC 2 cut(s) 70, 266
Csp6I GTAC 1 cut(s) 181
CviAII CATG 2 cut(s) 244, 386
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 3 cut(s) 8, 297, 456
DpnI GATC 4 cut(s) 154, 284, 374, 428
DpnII GATC 4 cut(s) 152, 282, 372, 426
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco105I TACGTA 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 159
Eco147I AGGCCT 2 cut(s) 49, 461
Eco81I CCTNAGG 1 cut(s) 456
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 249
FaeI CATG 2 cut(s) 247, 389
FaiI YATR 5 cut(s) 189, 245, 263, 291, 387
FatI CATG 2 cut(s) 243, 385
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 2 cut(s) 10, 61
Fsp4HI GCNGC 1 cut(s) 411
FspBI CTAG 2 cut(s) 35, 446
GluI GCNGC 1 cut(s) 411
HaeIII GGCC 2 cut(s) 49, 461
HgaI GACGC 2 cut(s) 70, 266
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 2 cut(s) 247, 389
HinfI GANTC 2 cut(s) 4, 114
HphI GGTGA 4 cut(s) 6, 136, 175, 374
Hpy166II GTNNAC 2 cut(s) 14, 232
Hpy188I TCNGA 3 cut(s) 9, 268, 316
Hpy188III TCNNGA 6 cut(s) 118, 147, 277, 334, 424, 433
Hpy8I GTNNAC 2 cut(s) 14, 232
HpyAV CCTTC 3 cut(s) 115, 160, 452
HpyCH4IV ACGT 2 cut(s) 179, 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 3 cut(s) 8, 297, 456
HpySE526I ACGT 2 cut(s) 179, 366
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 2 cut(s) 247, 389
Kzo9I GATC 4 cut(s) 152, 282, 372, 426
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 2 cut(s) 93, 329
LpnPI CCDG 4 cut(s) 44, 355, 381, 399
LweI GCATC 2 cut(s) 205, 317
MaeI CTAG 2 cut(s) 35, 446
MaeII ACGT 2 cut(s) 179, 366
MaeIII GTNAC 2 cut(s) 344, 362
MalI GATC 4 cut(s) 154, 284, 374, 428
MboI GATC 4 cut(s) 152, 282, 372, 426
MboII GAAGA 4 cut(s) 162, 292, 303, 392
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 341
MluCI AATT 2 cut(s) 201, 210
MnlI CCTC 6 cut(s) 27, 82, 124, 244, 314, 451
MseI TTAA 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 413
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 4 cut(s) 152, 282, 372, 426
NlaIII CATG 2 cut(s) 247, 389
NlaIV GGNNCC 2 cut(s) 141, 325
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 362
NspI RCATGY 1 cut(s) 389
PceI AGGCCT 2 cut(s) 49, 461
PciSI GCTCTTC 1 cut(s) 375
PfeI GAWTC 2 cut(s) 4, 114
PkrI GCNGC 1 cut(s) 412
Ppu21I YACGTR 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 141, 325
PsuI RGATCY 1 cut(s) 282
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 4 cut(s) 152, 282, 372, 426
SduI GDGCHC 1 cut(s) 341
SetI ASST 9 cut(s) 19, 36, 74, 126, 161, 182, 188, 369, 444
SfaNI GCATC 2 cut(s) 205, 317
SnaBI TACGTA 1 cut(s) 180
Sse9I AATT 2 cut(s) 201, 210
SseBI AGGCCT 2 cut(s) 49, 461
SsiI CCGC 1 cut(s) 411
SspMI CTAG 2 cut(s) 35, 446
StuI AGGCCT 2 cut(s) 49, 461
StyI CCWWGG 1 cut(s) 159
TaiI ACGT 2 cut(s) 182, 369
TaqI TCGA 2 cut(s) 276, 432
TasI AATT 2 cut(s) 201, 210
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 2 cut(s) 4, 114
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TseFI GTSAC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 222, 316
XceI RCATGY 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 2 cut(s) 35, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.